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Amy Goldberg

@amygoldberg.bsky.social
2K followers 761 following 44 posts

associate professor UCLA. population and evolutionary genetics. www.goldberglab.org

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Reposted by Amy Goldberg
Moi Expósito-Alonso (MOILAB) @mexpositoalonso.bsky.social · 21/09/2026
Fantastic Asst Professor positions open across multiple UC Berkeley departments @ucberkeleyofficial.bsky.social Plant/Algae/Microb aprecruit.berkeley.edu/JPF05522 Plant/Env aprecruit.berkeley.edu/JPF05382 Gen/Dev/Evo aprecruit.berkeley.edu/JPF05481 Eco aprecruit.berkeley.edu/JPF05489
aprecruit.berkeley.edu
Assistant Professor – Plant or Macroalgae-Associated Microbial Communities and Interactions - Plant and Microbial Biology
University of California, Berkeley is hiring. Apply now!
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Reposted by Amy Goldberg
Dmitri Petrov @petrovadmitri.bsky.social · 17/09/2026
We are searching for an Assistant Professor in Evolutionary Biology! Looking for colleagues asking fundamental questions relating to evolutionary processes and drivers of evolutionary patterns. If you think it is you, please do apply! And please repost. facultypositions.stanford.edu/jobs/assista...
facultypositions.stanford.edu
Assistant Professor in Evolutionary Biology - Stanford University, California, United States
The Department of Biology at Stanford University seeks applicants for a tenure-track Assistant Professor in Evolutionary Biology. A successful candidate will conduct research that asks fundamental que...
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Reposted by Amy Goldberg
UC Berkeley MCB @berkeleymcb.bsky.social · 14/08/2026
MCB is hiring Assistant Professors across 3 divisions!: 🧪BBS: aprecruit.berkeley.edu/JPF05483 🧬GGED: aprecruit.berkeley.edu/JPF05481 🦠IMM: aprecruit.berkeley.edu/JPF05486 🗓️ Application Deadline: October 19, 2026 🔗 Click the links or scan the QR codes to learn more and apply
MCB is hiring 3 Assistant Professor positions across 3 divisions: 

Biochemistry, Biophysics and Structural Biology (BBS); Genetics, Genomics, Evolution, and Development (GGED); and Immunology and Molecular Medicine (IMM)

BBS application link: https://aprecruit.berkeley.edu/JPF05483

GGED application link: https://aprecruit.berkeley.edu/JPF05481

IMM application link: https://aprecruit.berkeley.edu/JPF05486
Assistant Professor of Immunology and Molecular Medicine (IMM). IMM application link: https://aprecruit.berkeley.edu/JPF05486Assistant Professor of Biochemistry, Biophysics and Structural Biology (BBS). BBS application link: https://aprecruit.berkeley.edu/JPF05483Assistant Professor of Genetics, Genomics, Evolution, and Development (GGED). GGED application link: https://aprecruit.berkeley.edu/JPF05481
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Reposted by Amy Goldberg
Peter Laurin @peterlaurin.bsky.social · 30/06/2026
Super excited to share new work with my advisor @nanditagarud.bsky.social! We re-examine the rapidity of adaptation in the human gut microbiome and begin to characterize the adaptive architecture of selective sweeps spreading across human guts. www.biorxiv.org/content/10... 1/n:
biorxiv.org
Complex adaptive architectures constrain the pace of adaptations sweeping across human gut microbiomes
Recent work has shown that commensal gut bacteria can evolve rapidly within hosts on short timescales of days to months, fueled by the enormous mutational input generated daily in the microbiome. Yet ...
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Reposted by Amy Goldberg
Jonathan Pritchard @jkpritch.bsky.social · 13/12/2025
Our latest preprint revisits the classic model of mutation-selection balance. Do human recessive genes fit Haldane's 100-year old model? This work is by the wonderful @jonj-udd.bsky.social, and co-mentored by @jeffspence.github.io www.biorxiv.org/content/10.6...
biorxiv.org
Allele Frequencies at Recessive Disease Genes are Mainly Determined by Pleiotropic Effects in Heterozygotes
The classic theory of mutation-selection balance predicts the equilibrium frequency of genetic variation under negative selection. The model predicts a simple relationship between the total frequency ...
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Reposted by Amy Goldberg
Gideon Bradburd @gbradburd.bsky.social · 29/05/2026
postdoc alert 🚨! NIH-funded postdoc in my lab to work on Ancestral Recombination Graphs in space. Please spread the word widely in your networks, and please reach out if you're interested! (2-3yr position, start date flexible, pay/benefits good!). details here: careers.umich.edu/job_detail/2...
genescape.org
recruitment
Multiple positions available: ​ Postdoc PhD students
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Reposted by Amy Goldberg
Laurie Belcher @lauriebelch.bsky.social · 26/05/2026
We’re hiring for OrthoFinder! Great role for someone who enjoys scientific software development: Python, data analysis, workflows, Git, scalability, and making tools nicer to use. Comparative genomics or open-source bioinformatics experience would be a lovely bonus. my.corehr.com/pls/uoxrecru...
my.corehr.com
Job Details
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Reposted by Amy Goldberg
Tauras Vilgalys @taurvil.bsky.social · 13/05/2026
My lab is looking for a lab manager/technician! The successful candidate will help us study host-pathogen evolution using functional genomics and ex vivo infection experiments. Please share broadly and send candidates my way! www.ugajobsearch.com/postings/478... #hiring #genomics #biology
ugajobsearch.com
Laboratory Manager
This position will serve as a lab manager position in the Evolutionary Immunogenomics Lab (PI: Dr. Tauras Vilgalys) in the Department of Genetics. This is a heavily collaborative research environment ...
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Reposted by Amy Goldberg
Joanna Masel @joannamasel.bsky.social · 04/12/2025
Sequence alignments are notoriously prone to error. Our latest preprint offers a new tool for filtering errors out, assesses it and other filtering tools, and recommends new best practice. www.biorxiv.org/content/10.6... @phylowheeler.bsky.social 1/10
biorxiv.org
Improved gene tree inference from removing alignment errors both from focal genes and when training substitution models
Multiple Sequence Alignment (MSA) is a key step in phylogenetic analysis, and is prone to error. Unfortunately, algorithms that remove likely alignment errors from MSAs sometimes also remove informati...
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Chris Kyriazis @ckyriazis.bsky.social · 01/04/2026
New preprint! We sequenced 175 'Alalā (Hawaiian crow) genomes to understand why >50% of eggs fail to hatch in a species recovered from just 9 individuals. What we found was a both exciting and surprising. www.biorxiv.org/content/10.6...
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Reposted by Amy Goldberg
Jeff Spence @jeffspence.github.io · 31/03/2026
We are destroying species' habitats, leading to a mass extinction event. This habitat destruction also reduces the genetic diversity _within_ species. Our latest work develops quantitative models to predict how much genetic diversity has been and _will be_ lost. 🧬🧪🧵 www.pnas.org/doi/10.1073/...
pnas.org
Large future genetic diversity losses are predicted from conservation indicators even with habitat protection | PNAS
Genetic diversity within species underpins evolutionary adaptation and has recently been included as a target for protection in the United Nations’...
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Reposted by Amy Goldberg
David Lowry @davidlowry.bsky.social · 12/03/2026
Big congrats to former Lowry Lab postdoc Daniel Anstett, who's paper: "Rapid evolution predicts demographic recovery after extreme drought" is out in Science today. www.science.org/doi/10.1126/...
science.org
Rapid evolution predicts demographic recovery after extreme drought
Populations that are declining as a result of climate change may need to evolve to persist. Although evolutionary rescue has been demonstrated in theory and in the laboratory, its relevance to natural...
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Reposted by Amy Goldberg
Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 12/03/2026
Cool paper, turning evolutionary theory on its head - gene conversion overcomes the cost of asexual reproduction… Gene conversion empowers natural selection in a clonal fish species www.nature.com/articles/s41...
nature.com
Gene conversion empowers natural selection in a clonal fish species - Nature
Analysis of the asexually reproducing Amazon molly Poecilia formosa and its sexually reproducing progenitors Poecilia mexicana and Poecilia latipinna reveals that it maintains a divergent mutational l...
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Amy Goldberg @amygoldberg.bsky.social · 05/03/2026
The Goldberg lab at UCLA is hiring one or more postdocs. Flexible start date. We develop methods to study population genetics of humans, our primate relatives, and our pathogens. www.goldberglab.org/join
goldberglab.org
Amy Goldberg, PhD - Join
The Goldberg lab is moving to UCLA summer 2025, and recruiting postdocs and graduate students. We are a computational lab with occasional wet lab or field collaborators. We will be located in the Depa...
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Reposted by Amy Goldberg
Aida Andres @aidaandres.bsky.social · 02/03/2026
Job alert: open position for a Professor or Associate Professor of Computational Genomics in Health and Disease at University College London. Based in the Department of Genetics, Evolution and Environment of UCL, and UGI, and funded by the UCL Health Strategy. www.ucl.ac.uk/work-at-ucl/... 🧪
ucl.ac.uk
UCL – University College London
UCL is consistently ranked as one of the top ten universities in the world (QS World University Rankings 2010-2022) and is No.2 in the UK for research power (Research Excellence Framework 2021).
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Reposted by Amy Goldberg
Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 09/02/2026
Fun news! @gcbias.bsky.social and I are teaching a 2-week online population genetics workshop this summer to raise money for the Center for Population Biology at UC Davis. We're trying to gauge interest -- please fill this out if you might be interested! And please share broadly!
docs.google.com
Davis Summer Population Genomics Program
Want to learn population genetics? Please fill out this form to indicate your potential interest in a 2-week intensive online summer population genetics course taught by Jeffrey Ross-Ibarra and Graham...
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Reposted by Amy Goldberg
Laurits Skov @lauritsskov.bsky.social · 04/02/2026
Yes there should be (towards bottom of page) :) smbe2026.org/registration/
smbe2026.org
Registration - SMBE 2026 - Copenhagen Denmark
SMBE 2026 Registration Days Hours Minutes Seconds Registration is open REGISTRATION for onsite or Virtual attendance SMBE Membership – If you are an active member of the SMBE society you can  register...
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Amy Goldberg @amygoldberg.bsky.social · 03/02/2026
anyone know if there is childcare at @official-smbe.bsky.social 2026 this year? #SMBE2026
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Reposted by Amy Goldberg
Paleogenomics - María Ávila Arcos @paleogenomics.bsky.social · 31/01/2026
We sequenced #ancientRNA from an 18th-Century human lung and recovered a rhinovirus genome. Take a look at our preprint. Feedback welcome.
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Reposted by Amy Goldberg
Society for Molecular Biology and Evolution @official-smbe.bsky.social · 20/01/2026
❗Just two weeks to go! Please remember to submit your abstract and award application for SMBE 2026 in Copenhagen by February 3. 📨 Abstract submission & Award applications smbe2026.org/abstracts 📋 Programme details smbe2026.org/programme #SMBE2026
Remember to submit your abstract and your award application for SMBE 2026 in Copenhagen by February 3.
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Reposted by Amy Goldberg
Peter Sudmant @psudmant.bsky.social · 14/01/2026
Registration deadline is fast approaching for the "Host adaptations to viral infections” Meeting May 10th-13th, 2026, at the CNRS Station Biologique de Roscoff, Brittany, France! JOIN US and the many amazing speakers! JOIN US! sites.google.com/berkeley.edu...
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Reposted by Amy Goldberg
Joshua G. Schraiber @jgschraiber.bsky.social · 15/01/2026
If you want to distract yourself while the world falls apart, this is a really cool paper from Amy that simultaneously solves many puzzling observations about malaria parasite genetics by positing the importance of multiple merges
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Amy Goldberg @amygoldberg.bsky.social · 14/01/2026
New preprint! and my first single-author paper, so bear with me. www.biorxiv.org/content/10.6... Malaria population genetic studies have found some puzzling patterns: Ne estimates spanning orders of magnitude, genome-wide negative Tajima's D, and over a quarter of genes with πN/πS >1 1/n
biorxiv.org
Rare variation in malaria parasites biases population-genetic inference
Understanding how pathogens evolve is fundamental to disease control and is a basic question in evolutionary biology, yet pathogens with complex life cycles violate assumptions of classic evolutionary...
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Reposted by Amy Goldberg
Carl Zimmer @carlzimmer.com · 05/01/2026
Here's my latest contribution to the @nytimes "Lost Science" series. Brenna Henn's sweeping study of African genetics has been frozen. Gift link: nyti.ms/3Ypmm1A
Portrait of Brenna Henn next to an open freezer of samples.
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Amy Goldberg @amygoldberg.bsky.social · 01/12/2025
PEQG or ProbGen 2026?
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Reposted by Amy Goldberg
Maitreya Dunham @maitreya.bsky.social · 24/11/2025
Open faculty position (Assistant or Associate) in UW Medical Genetics. As you might expect, faculty often end up also interacting with Genome Sciences, so we're hoping for some great prospects! Note the clinical requirements for the position. apply.interfolio.com/176466
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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Reposted by Amy Goldberg
Pontus Skoglund @pontus-skoglund.bsky.social · 19/11/2025
The 2026 EMBL symposium 'Reconstructing the human past using ancient and modern genomics' is live with a fantastic invited speaker lineup! Abstract deadline 9 June. If work is ongoing, plan for Heidelberg in September😉. Organised by Maanasa Raghavan, @matejahajdi.bsky.social, Choongwon Jeong & me.
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Aylwyn Scally @aylwyn-scally.bsky.social · 11/11/2025
Come and join us here in Cambridge! Applications open for a new faculty position, for a researcher in computational and/or theoretical biology, based jointly in Genetics and Mathematics. Happy to answer questions about research, teaching and working here. www.cam.ac.uk/jobs/faculty...
cam.ac.uk
Faculty Position in Computational Biology
Applications are invited for an Assistant/ Associate Professorship in Computational Biology to commence on 1 April 2026 or shortly thereafter. This is a joint post between the Department of Applied
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Reposted by Amy Goldberg
Molly Przeworski @mollyprz.bsky.social · 11/11/2025
An empirical approach to evaluating the prevalence of long-lived balancing selection in humans--and important limitations. Work by @hannahmm.bsky.social
hannahmm.bsky.social
Hannah Munby (@hannahmm.bsky.social)
PhD candidate @ Biological Sciences, Columbia
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Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 31/10/2025
Incredible paper - Genomic architecture of eggmimicry and its consequencesfor speciation in parasitic cuckoos www.science.org/doi/epdf/10.... and a great commentary here www.science.org/doi/epdf/10.... @btobirds.bsky.social
science.org
Genomic architecture of egg mimicry and its consequences for speciation in parasitic cuckoos
Host-parasite arms races facilitate rapid evolution and can fuel speciation. Cuculus cuckoos are deceptive egg mimics that exhibit a broad diversity of counterfeit egg phenotypes, representing host-ad...
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Reposted by Amy Goldberg
Yuki Haba @yukihaba.bsky.social · 25/10/2025
How does life evolve to adapt to modern cities? Out now in Science, my PhD work with @lindymcbr.bsky.social uncovers the ancient origin of the “London Underground mosquito” – one of the most iconic examples of urban adaptation. 🧵(1/n) @science.org www.science.org/doi/10.1126/science.ady4515
science.org
Ancient origin of an urban underground mosquito
Understanding how life is adapting to urban environments represents an important challenge in evolutionary biology. In this work, we investigate a widely cited example of urban adaptation, Culex pipie...
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April Wei @aprilwei.bsky.social · 08/10/2025
Excited to preprint our latest work (w/ Drew DeHaas, Zhibai Jia, Leo Speidel) on using ARGs for demographic inference. w/ applications using data from 1000 Genomes Project. www.biorxiv.org/content/10.1...
biorxiv.org
Inference of complex demographic history using composite likelihood based on whole-genome genealogies
Accurate parametric inference on complex demographic models is a continuing challenge in population genetics. Ancestral recombination graphs (ARGs) provide richer information than simple population ge...
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Reposted by Amy Goldberg
Society for Molecular Biology and Evolution @official-smbe.bsky.social · 01/10/2025
🔁 Please share - we remind the SMBE community that the Call for Symposia for SMBE2026 in Copenhagen is open. We invite you to submit a symposium proposal to help shape the scientific content of our annual meeting. 🗓️ Deadline: October 15th More information: smbe2026.org/symposia #SMBE2026
SMBE2026 | Final call for symposia
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Christina Warinner @christinawarinner.bsky.social · 15/09/2025
We're organizing a new CARTA symposium this November 7 on "Ancient DNA: New Revelations"! We have an amazing lineup of speakers who will showcase the biggest discoveries in ancient DNA over the past 5 years - and offer a sneak peek of what's next. Mark your calendars and don't miss it!
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 11/08/2025
SLiM 5: Eco-evolutionary simulations across multiple chromosomes and full genomes www.biorxiv.org/content/10.1101/202…
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Torsten Günther @trstngnthr.bsky.social · 04/08/2025
Results of our (extremely long-term) side project with @amygoldberg.bsky.social and @jgschraiber.bsky.social out now in G3: doi.org/10.1093/g3jo... We benchmarked methods for estimating ancestry proportions under mapping bias and present an adjusted GenotypeLikelihood to mitigate its impact (1/2)
doi.org
Estimating allele frequencies, ancestry proportions and genotype likelihoods in the presence of mapping bias
Abstract. Population genomic analyses rely on an accurate and unbiased characterization of the genetic composition of the studied population. For short-rea
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Amy Goldberg @amygoldberg.bsky.social · 03/08/2025
My first conference ever was at IPAM as an undergrad, bringing me into scientific research. When I branched out into new topics, my first conference as new faculty was also at IPAM. My R35 was suspended. A lot of personal feelings, but more I worry for the future of the country.
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Amy Goldberg @amygoldberg.bsky.social · 01/07/2025
Excited to have you on board!
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 28/06/2025
On the use of generative models for evolutionary inference of malaria vectors from genomic data www.biorxiv.org/content/10.1101/202…
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CompEvo & HumanG Labs @compevohumang.bsky.social · 27/06/2025
🧬In Neolithic Çatalhöyük, family was built on social relations rather than blood ties. Genetic analysis shows that over time, co-residents were no longer genetic relatives. Female subadults were buried with 5x more grave goods. 🔍A surprising story of Neolithic social life.
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Dan Schrider @samurscicop.bsky.social · 05/06/2025
The preliminary program of ProbGen 2026, which will be held at UC Berkeley, is now up: probgen2026.github.io Sharing on behalf of Rasmus Nielsen who is not on this site. For more see his thread on that other site: x.com/ras_nielsen/...
probgen2026.github.io
Home - ProbGen 2026
Your Site Description
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John Novembre @jnovembre.bsky.social · 05/06/2025
Excited for our publication on how the geographic scale of a sample affects the discovery of rare, deleterious variants to be out this week. With a mix of theory, simulation, and data analysis, we show when samples are narrow vs broad, the number of variants discovered and their frequencies change
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Laurits Skov @lauritsskov.bsky.social · 05/05/2025
We ( @zeniabaek.bsky.social @moicoll.bsky.social and @asgerhobolth.bsky.social ) present a new cool way to visualize the optimal trade off for hmm decoding called Artemis plots! arxiv.org/pdf/2504.15156 www.biorxiv.org/content/10.1...
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Marta Mirazon Lahr @martamlahr.bsky.social · 29/04/2025
@amygoldberg.bsky.social exploring arcgaeological & genetic estimates of population size / growth during the Holocene in the context of the #Neolithic demografic transition. #HumanEvo25
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Gen Wojcik @genandgenes.bsky.social · 24/04/2025
I wrote about how we must stand and fight against the threat of eugenics. Fueled by white nationalism and scientific racism, these beliefs are factually wrong and ethically abhorrent. This fight includes supporting efforts to diversify our workforce & science. To stop now would be a deep betrayal.
nature.com
Eugenics is on the rise again: human geneticists must take a stand
Scientists must push back against the threat of rising white nationalism and the dangerous and pseudoscientific ideas of eugenics.
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Aida Andres @aidaandres.bsky.social · 21/03/2025
Interested in a starting PI position at University College London to work on Genetics, Evolution or the Environment? My department has opened the call for expressions of interest for sponsorship of independent fellowship applications. www.ucl.ac.uk/work-at-ucl/...
ucl.ac.uk
UCL – University College London
UCL is consistently ranked as one of the top ten universities in the world (QS World University Rankings 2010-2022) and is No.2 in the UK for research power (Research Excellence Framework 2021).
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Kirk Lohmueller @klohmueller.bsky.social · 13/03/2025
Come join us at UCLA!
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Amy Goldberg @amygoldberg.bsky.social · 13/03/2025
Last call—hiring for my lab moving to UCLA!
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Nagehan Ramazanoglu Bahadir @nagehanr.bsky.social · 19/02/2025
Abstract submissions are still open by 4 March for our #HumanEvolution conference! Don’t miss the chance to join our amazing speakers! @sarahpederzani.bsky.social @paleogenomics.bsky.social @amygoldberg.bsky.social @jjrowan.bsky.social @martamlahr.bsky.social @evanirvingpease.bsky.social
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