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Hongkai Ji

@jihk.bsky.social
40 followers 26 following 4 posts

Professor @jhubiostat.bsky.social, data scientist

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Hongkai Ji @jihk.bsky.social · 19/12/2025
Glad to share our benchmark study in Genome Biology on highly variable gene (HVG) selection methods for single-cell RNA-seq. We show that a hybrid strategy performs best, now implemented in the mixhvg R package. rdcu.be/eUfjt
rdcu.be
A systematic evaluation of highly variable gene selection methods for single-cell RNA-sequencing
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Reposted by Hongkai Ji
ACIR @acir-org.bsky.social · 20/02/2025
Zeng et al. developed a mutation-associated neoantigen (MANA) score, based on the expression of ENTPD1, CXCL13, and IL7R, that can identify neoantigen- and tumor-associated antigen-specific TILs across cancers. bit.ly/4hIhgFB   @jhubiostat.bsky.social  @jihk.bsky.social
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Hongkai Ji @jihk.bsky.social · 31/01/2025
Exciting collaboration with the Jackson, Pardoll, Yegnasubramanian, and Bettegowda Labs - now published in Science! Grateful for the contributions of our current and past group members: Runzhe Li, Zhicheng Ji, Wenpin Hou, and Wentao Zhan. #TeamScience
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Hongkai Ji @jihk.bsky.social · 23/01/2025
Thrilled to introduce FUNCODE, a new ENCODE4 resource quantifying cross-species conservation of DNA elements' dynamic activities - going beyond sequence conservation - using ENCODE data. Check out the preprint: www.biorxiv.org/content/10.1....
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