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Kai Tong

@kaitong25.bsky.social
118 followers 57 following 2 posts

Postdoc in Ahmad (Mo) Khalil's lab at Harvard University. Synthetic multicellularity | Understanding and engineering multicellularity via synthetic biology and experimental evolution.

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Reposted by Kai Tong
Will Shaw @willshaw.bsky.social · 11/06/2026
New preprint out 🌱 We present a new T-DNA vector system for Arabidopsis that supports clean, genomically mapped, single-copy T-DNA insertion with predictable cell-type/conditional gene expression. @mokhalil.bsky.social + Gehring labs biorxiv.org/content/10.6... 🧵1/16
biorxiv.org
Rational design of T-DNA vectors enables predictable, single-copy integration in Arabidopsis thaliana
Agrobacterium-mediated transformation is the dominant method for plant transgenesis, yet it frequently produces multi-copy, structurally complex T-DNA insertions associated with transgene silencing, u...
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Mo Khalil @mokhalil.bsky.social · 03/06/2026
🚨 An exciting frontier is bringing synthetic biology to MULTIcellular systems. To effectively engineer them, we need design principles. What are the benefits of group formation? What are the costs? See our new preprint led by @heidiklumpe.bsky.social to learn more!👇 www.biorxiv.org/content/10.6...
biorxiv.org
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Gautam Dey @gautamdey.bsky.social · 18/05/2026
Multinucleate cells challenge deeply-held assumptions about complexity, ecological success and evolution. Postdoc extraordinaire and gifted writer @mrosjac.bsky.social tackles this subject with aplomb - tell us what you think! www.sciencedirect.com/science/arti... @currentbiology.bsky.social
sciencedirect.com
Multinucleation as a recurring evolutionary strategy for scaling and plasticity
Multinucleate cells — single cells containing multiple nuclei in a shared cytoplasm — are found across the eukaryotic tree of life. Having evolved ind…
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Enrico Sandro Colizzi @escolizzi.bsky.social · 26/03/2026
How common is multicellularity in bacteria? And archaea? And how does it evolve? We wrote a short review "On the architecture and evolution of prokaryotic multicellularity". Preprint link: bit.ly/4ta06Gq Sharing and comments are much appreciated. 1/4
An overview of bacterial multicellular formations: biofilms, filaments, free-floating aggregates, motile collectives and fruiting bodies. For each form, we mention an analogous eukaryotic multicellular form (respectively animal epitelia, filaments in fungi, Volvox, Dictyostelium/social animals, Dictyostelium and other slime moulds)
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Thibaut Brunet @thibautbrunet.bsky.social · 28/02/2026
Final version @nature.com of our paper describing unconventional multicellular development in a choanoflagellate inhabiting an extreme environment. A ton of new data since the first @biorxivpreprint.bsky.social preprint (which we've kept updating). A brief 🧵 (carried over from the old place)
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Will Ratcliff @wcratcliff.bsky.social · 20/01/2026
Nature highlighted @kaitong25.bsky.social's 'Behind the Paper' blog post in their end of year round up: communities.springernature.com/posts/top-po... The funny thing is, they told us "Posts over 1,000 words have reduced engagement- yours is over 3,000 words, please reduce length". We kept it long.
communities.springernature.com
Top Posts from the Research Communities in 2025: A Year in Review
We’ve brought together a shortlist of some of the most viewed blog posts in 2025, highlighting contributions from diverse research areas. What was your favourite post of 2025? Share your thoughts in t...
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 15/01/2026
📱Is the origin of animals comparable to the origin of the smartphones? Yes! See our new review in @embojournal.org where we show how important it was the new "Operating System" (animalOS)for animals to evolve! with @ricardsole.bsky.social, Nick and Elena @ibe-barcelona.bsky.social @csic.es @prbb.org
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Will Ratcliff @wcratcliff.bsky.social · 09/12/2025
1/28 New preprint up, which I think is the best theoretical idea I've ever had. We asked a simple question: what are the costs of investment into non-reproductive somatic cells? Turns out these costs decrease with the *logarithm* of organism size! www.biorxiv.org/content/10.6...
biorxiv.org
The fitness costs of reproductive specialization scale inversely with organismal size
The evolution of reproductive specialization represents a fundamental innovation in multicellular life, yet the conditions favoring its evolution remain poorly understood. Here, we develop a populatio...
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Nick Desnoyer @nickdesnoyer.bsky.social · 17/11/2025
"Technology always becomes obsolete, but a good aesthetic is, by definition, timeless" -Sheehan Quirke Preview of my flower design toolkit and its visual language.
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 31/10/2025
🚨Our collaboration with @centriolelab.bsky.social & @gautamdey.bsky.social is out today in @cp-cell.bsky.social We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny. #ProtistsOnSky #SciComm #SciSky www.cell.com/cell/fulltex...
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Tom Ellis @proftomellis.bsky.social · 23/10/2025
A new review paper from our lab courtesy of @jazzsynbio.bsky.social is published in Trends in Biotechnology In this review, we look at the many opportunities for synthetic biology to be used in the research and applications of Holobionts.
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Arnau Sebé-Pedrós @arnausebe.bsky.social · 24/09/2025
Happy to share the Biodiversity Cell Atlas white paper, out today in @nature.com. We look at the possibilities, challenges, and potential impacts of molecularly mapping cells across the tree of life. www.nature.com/articles/s41...
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Nature @nature.com · 27/08/2025
For some three billion years, unicellular organisms ruled Earth. Then, around one billion years ago, a new chapter of life began go.nature.com/3JyRV4S
go.nature.com
How did life get multicellular? Five simple organisms could have the answer
Single-celled species that often stick together in colonies have researchers rethinking the origin of animals.
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Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 25/08/2025
Adaptive radiation during long-term experimental evolution of the multicellular bacterium #Streptomyces www.biorxiv.org/content/10.1...
biorxiv.org
Adaptive radiation during long-term experimental evolution of the multicellular bacterium, Streptomyces
The rapid diversification of a single lineage into novel ecological niches underpins evolution of biodiversity, with adaptive radiations being important drivers of ecological diversity across the tree...
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Richard Lenski @relenski.bsky.social · 12/08/2025
Excited to share new #program, STEPS, which can simulate #dynamics of the E. coli Long-Term Evolution Experiment (#LTEE) or other microbes in serial transfer regime. telliamedrevisited.wordpress.com/2025/08/12/s... STEPS developed by @devinmlake.bsky.social, Zachary Matson, Minako Izutsu, and me.
telliamedrevisited.wordpress.com
STEPS To It
Announcing a new program, called STEPS, to simulate the dynamics of evolving microbial populations.
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Nick Desnoyer @nickdesnoyer.bsky.social · 11/08/2025
Introducing the 1,000 Flower Collection 🧬🌹 I’m creating 1,000 genetically designed flowers each crafted with new colors, patterns, and shapes. Here’s how I’m making it happen… and how you can join me on this journey 🧵(1/7)
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Tom Ellis @proftomellis.bsky.social · 11/07/2025
Online now @ Cell is the yeast multicellular engineering paper from Fankang Meng - the fruits of his productive PhD in our group. He developed modular synthetic biology tools to bring multicellular behaviours to yeast - specific adhesion, juxtacrine signalling and more. www.cell.com/cell/fulltex...
cell.com
Engineering yeast multicellular behaviors via synthetic adhesion and contact signaling
By designing synthetic toolkits for contact-based signaling (MARS) and cell-cell adhesion (SATURN), we program yeast to form multicellular structures and perform complex tasks, like building logic cir...
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Will Ratcliff @wcratcliff.bsky.social · 24/06/2025
1/27 We have a new paper out! Turns out that snowflake yeast have been hiding a secret from us - they've evolved a (very!) crude circulatory system. Not with blood vessels or a heart, but through spontaneous fluid flows powered by their metabolism. 🧪🔬 www.science.org/doi/full/10....
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Iana V. Kim @ianakim.bsky.social · 07/05/2025
I’m very excited to share our work on the early evolution of animal regulatory genome architecture - the main project of my postdoc, carried out across two wonderful and inspirational labs of @arnausebe.bsky.social and @mamartirenom.bsky.social. www.nature.com/articles/s41...
nature.com
Chromatin loops are an ancestral hallmark of the animal regulatory genome - Nature
The physical organization of the genome in non-bilaterian animals and their closest unicellular relatives is characterized; comparative analysis shows chromatin looping is a conserved feature of ...
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Thibaut Brunet @thibautbrunet.bsky.social · 05/05/2025
Fun Q&A with Curr Bio in which I discuss mammoths, Don Quijote, and why you should not fall in love with a hypothesis authors.elsevier.com/a/1l2MF3QW8S...
authors.elsevier.com
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Will Ratcliff @wcratcliff.bsky.social · 18/04/2025
Sign ups for the fall Barcelona multicellularity meeting are now up- come join us! meetings.embo.org/event/25-mul...
meetings.embo.org
Evolution and origins of multicellularity across the tree of life
The study of the origins and evolution of multicellularity in different lineages has recently captured the attention of many research groups and is fueling the generation of numerous innovative resea…
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Josh Bongard @doctorjosh.bsky.social · 15/04/2025
We published a new xenobot-related paper today: journals.plos.org/ploscompbiol... In a nutshell: building xenobots from frog "explants" is good because explants, apparently, come with adaptive potential "built in". This paper took 6 years and 10 co-authors (see post #2) to reach the light.
journals.plos.org
Revealing non-trivial information structures in aneural biological tissues via functional connectivity
Author summary A central challenge in understanding several diverse processes in biology, including morphogenesis, wound healing, and development, is learning from empirical data how information is in...
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Itai Yanai @itaiyanai.bsky.social · 07/04/2025
Contrary to popular belief, what is important in science is as much its spirit as its product: it is as much the openmindedness, the primacy of criticism, the submission to the unforeseen, however upsetting, as the result, however new that may be. – Francois Jacob www.nature.com/articles/s41...
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Thibaut Brunet @thibautbrunet.bsky.social · 03/04/2025
Striking new study from @archaeon-alex.bsky.social's lab just out in @science.org on multicellular development induced by compression in Archaea: www.science.org/doi/10.1126/...
science.org
Tissue-like multicellular development triggered by mechanical compression in archaea
The advent of clonal multicellularity is a critical evolutionary milestone, seen often in eukaryotes, rarely in bacteria, and only once in archaea. We show that uniaxial compression induces clonal mul...
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Dinah Davison @dinahdavison.bsky.social · 21/03/2025
My new paper examining how plasticity may have shaped the evolution of cellular differentiation is out! We propose that the plastic development of somatic-like cells may have been an intermediate step in the evolution of soma in the volvocine algae. #evosky #mevosky doi.org/10.1098/rspb...
doi.org
Plasticity and the evolution of group-level regulation of cellular differentiation in the volvocine algae | Proceedings of the Royal Society B: Biological Sciences
During the evolution of multicellularity, the unit of selection transitions from single cells to integrated multicellular cell groups, necessitating the evolution of group-level traits such as somatic...
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Will Ratcliff @wcratcliff.bsky.social · 05/03/2025
This "behind the paper" is a pretty fun read. Kai includes discord chats and other pieces of day to day science that do a great job of showing how the paper came together.
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Will Ratcliff @wcratcliff.bsky.social · 05/03/2025
1/46 Hey folks, we have a new paper out on the MuLTEE. Strap in and I’ll tell you the story of how this “little paper on polyploidy” turned into the most data rich paper our lab has produced, largely thanks to the leadership and work ethic of @kaitong25.bsky.social. www.nature.com/articles/s41...
nature.com
Genome duplication in a long-term multicellularity evolution experiment - Nature
In the Multicellularity Long Term Evolution Experiment, diploid yeast evolve to be tetraploid under selection for larger multicellular size, revealing how whole-genome duplication can arise due to its...
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