Reposted by Enrico Sandro ColizziSara Mitri @saramitri.bsky.social · 22/09/2026Check out @sulheim.bsky.social's paper! The latest from our lab showing that some species do actually coexist robustly, no matter what or how much you feed them, whether the environment around them is constant, and whether or not they depend on each other metabolically for amino acids and vitamins. 14414
Reposted by Enrico Sandro ColizziKelley Gallagher @kelleygallagher.bsky.social · 07/08/2026Excited to share our lab's first paper on the evolution of a c-di-GMP-controlled sigma factor: journals.asm.org/doi/10.1128/...journals.asm.orgRegulatory divergence and functional diversification of a c-di-GMP-controlled sigma factor in Actinomycetota | mSystemsMounting global responses to dynamic environmental conditions is a crucial function that bacterial cells must perform. Global regulatory networks are most often studied in individual species, however,... 22510
Reposted by Enrico Sandro ColizziPaul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 22/09/2026This is very cool @kelleygallagher.bsky.social et al Regulatory divergence and functional diversification of a c-di-GMP-controlled sigma factor in Actinomycetota doi.org/10.1128/msys...doi.orgRegulatory divergence and functional diversification of a c-di-GMP-controlled sigma factor in Actinomycetota | mSystemsMounting global responses to dynamic environmental conditions is a crucial function that bacterial cells must perform. Global regulatory networks are most often studied in individual species, however,... 0105
Reposted by Enrico Sandro ColizziAlvaro Sanchez @asanchezlab.bsky.social · 21/08/2026New preprint from the lab: The Latent Simplicity of Microbial Ecological Interactions www.biorxiv.org/content/10.6... We're excited about this one. We find that high-order microbial interactions often obey simple linear laws making microbial communities far more predictable than one might expect 36932
Reposted by Enrico Sandro ColizziChristian Kost @kostchristian.bsky.social · 24/08/2026Very happy that our paper Obligate cross-feeding of metabolites is common in soil microbial communities just came out in Nature Microbiology. See here 👇 Paywalled version: www.nature.com/articles/s41... Free read-only version: rdcu.be/fBHAbnature.comObligate cross-feeding of metabolites is common in soil microbial communities - Nature MicrobiologyCultivation-dependent techniques, computational analyses and genome-scale metabolic models show widespread amino acid auxotrophies, suggesting that soil microorganisms exist within integrated ecologic... 814256
Reposted by Enrico Sandro ColizziAlvaro Sanchez @asanchezlab.bsky.social · 21/08/2026New preprint from the lab: The Latent Simplicity of Microbial Ecological Interactions www.biorxiv.org/content/10.6... We're excited about this one. We find that high-order microbial interactions often obey simple linear laws making microbial communities far more predictable than one might expect 4277
Reposted by Enrico Sandro ColizziChristian Kost @kostchristian.bsky.social · 08/07/2026Happy to announce that a new opinion paper of our group just came out: A conceptual framework to dissect emergent functions in microbial communities with @swagatika.bsky.social @sharvari27.bsky.social @anjanaprasad.bsky.social @palshubharthi.bsky.social www.sciencedirect.com/science/arti...sciencedirect.comA conceptual framework to dissect emergent functions in microbial communitiesMicrobial communities play vital roles in diverse ecosystems and are key drivers of numerous industrial or health-related applications. In many cases,… 34818
Reposted by Enrico Sandro ColizziCameron Thrash @jcamthrash.bsky.social · 29/06/2026Cyanobacterial flocculation as a defence against bacterial predation academic.oup.com/ismej/advanc... #jcampubsacademic.oup.comCyanobacterial flocculation as a defence against bacterial predationAbstract. Many cyanobacteria are capable of flocculation: the formation of floating linked assemblages of many thousands of cells. Flocculation is a highly 0176
Reposted by Enrico Sandro Colizzi🍁 Alex Smith 🍁 @alexsmithants.bsky.social · 07/07/2026🧪 Physiology is a hidden dimension of diversity in the radiation of woodland salamanders | PNAS www.pnas.org/doi/10.1073/...pnas.orgPhysiology is a hidden dimension of diversity in the radiation of woodland salamanders | PNASMorphological evolution can be explosive, producing visually spectacular adaptive radiations like Caribbean anoles, Malagasy vangas, and African Ri... 04720
Reposted by Enrico Sandro ColizziPawel Burkhardt @pawelburkhardt.bsky.social · 16/06/2026How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202... 411958
Reposted by Enrico Sandro ColizziLeah McPhillips @leahmcphillips.bsky.social · 09/06/2026Excited to share this is now published in @narjournal.bsky.social 🎉 see the preprint thread below for a summary of our findings on plasmids with multiple partition systems using the Streptomyces plasmid SCP1 as a model! academic.oup.com/nar/article/...academic.oup.comStable inheritance of the Streptomyces linear plasmid SCP1 by dual ParABS partition systemsAbstract. Low-copy-number plasmids often rely on dedicated maintenance mechanisms, such as partitioning systems, to ensure stable inheritance across genera 0116
Reposted by Enrico Sandro ColizziTung Le @tunglejic.bsky.social · 08/06/2026now published!!! @johninnescentre.bsky.social @leahmcphillips.bsky.social academic.oup.com/nar/article/...academic.oup.comStable inheritance of the Streptomyces linear plasmid SCP1 by dual ParABS partition systemsAbstract. Low-copy-number plasmids often rely on dedicated maintenance mechanisms, such as partitioning systems, to ensure stable inheritance across genera 22213
Reposted by Enrico Sandro ColizziJeroen Meijer @jeroenmeijer.bsky.social · 01/06/2026Thrilled that our paper "Eco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communities" is out! 🎉🦠🧬 www.science.org/doi/10.1126/... w/ @paulbrainey.bsky.social, Petros Skiadas, Paulien Hogeweg, @bedutilh.bsky.socialscience.orgEco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communitiesA single bacteriophage can dominate microbial communities yet only evolves when migration changes its ecological context. 24419
Reposted by Enrico Sandro ColizziSarah Robinson @robinsonsci.bsky.social · 28/05/2026www.cam.ac.uk/jobs/researc...cam.ac.ukResearch Assistant - Robinson GroupApplications are invited for a Research Assistant position in the group of Dr Sarah Robinson at the Sainsbury Laboratory Cambridge University. The successful applicant will be part of a group that inv... 01612
Reposted by Enrico Sandro ColizziDrew Bridges @bridgesbio.bsky.social · 29/04/2026New preprint: "A branching cell-fate decision in biofilm dispersal enables long-term surface persistence." When V. cholerae biofilms disperse, it isn’t a uniform exit, rather, an opportunity to bet-hedge. A subpopulation of cells stay behind, primed for biofilm regrowth. doi.org/10.64898/202... 11710
Reposted by Enrico Sandro ColizziPaula García-Galindo @ggalindopaula.bsky.social · 22/04/2026Phenotypic cliffs paper is out! We observe in RNA that phenotypic sites which typically keep the phenotype unchanged through mutation (robust), are also the ones which lead to the most change when they do. royalsocietypublishing.org/rsif/article...royalsocietypublishing.orgPhenotypic cliffs in the RNA genotype–phenotype mapAbstract. Point mutations of a genotype can leave the phenotype unchanged, or change it, in some cases radically. The extent of this phenotypic change can 073
Reposted by Enrico Sandro ColizziTheory of Living Matter Group @tlmcambridge.bsky.social · 14/04/2026New lineup of exciting speakers for the Easter term. Sign up to our mailing list for updated zoom links 📝📩 056
Reposted by Enrico Sandro ColizziSam von der Dunk @derdunk.bsky.social · 09/04/2026Very excited with the online publication of our modeling work on the evolution of sexual reproduction during obligate endosymbiosis: doi.org/10.1098/rstb.... The first publication of Alkmini Zania 🎉; together with Paulien Hogeweg.doi.org 12111
Reposted by Enrico Sandro ColizziChristian Kost @kostchristian.bsky.social · 14/04/2026@shrylishreekar.bsky.social and me wrote a commentary on Chunhui Hao's and @stuwest.bsky.social et al.'s recent paper "Cooperation and the evolution of bacterial niche breadth" in PNAS. Please find our commentary here: www.pnas.org/doi/10.1073/... 2319
Reposted by Enrico Sandro Colizzilaurenmlui.bsky.social @laurenmlui.bsky.social · 08/04/2026With a 135 complete, circular Pelagibacter genomes, we have answered some of the most outstanding questions about what is often considered the most abundant organism on the planet, with roughly 10 million times more individuals in the ocean than stars in the universe. Check out our preprint. 3105
Reposted by Enrico Sandro ColizziVaughn Cooper @vscooper.micropopbio.org · 30/03/2026Now out in AEM @asm.org! 🎉🧪 *High school student-isolated mutants 👉🏻 novel genetic causes of biofilm-associated adaptations *We learn how diversity arises quickly and is maintained *EvolvingSTEM enables scalable research in classrooms & promotes scientific literacy journals.asm.org/eprint/FBU9M...journals.asm.orgGenetic diversification of Pseudomonas fluorescens maintained by multi-niche selection within biofilms | Applied and Environmental MicrobiologyBacterial biofilms dominate microbial life; however, their evolutionary genetics remain incompletely understood. Extensive replication of biofilm selection experiments by secondary school students can... 48346
Reposted by Enrico Sandro ColizziÁkos T Kovács @evolvedbiofilm.bsky.social · 29/03/2026On the architecture and evolution of prokaryotic multicellularity Preprint from @escolizzi.bsky.social www.authorea.com/doi/full/10....authorea.comOn the architecture and evolution of prokaryotic multicellularityAbstractProkaryotes form multicellular structures under both natural and experimental conditions, based on developmental programs that sometimes echo those known from eukaryotes. Recent research has i... 1186
Reposted by Enrico Sandro ColizziSPP2389 - Emergent Functions of Bacterial Multicellularity @spp2389.bsky.social · 26/03/2026What started out as a student project has grown over the last 2 years into a full-fledged review! So many thanks to @escolizzi.bsky.social for leading this multicellular effort and sharing your evolutionary wisdom with us 🫶🏻🦠 083
Enrico Sandro Colizzi @escolizzi.bsky.social · 26/03/2026How common is multicellularity in bacteria? And archaea? And how does it evolve? We wrote a short review "On the architecture and evolution of prokaryotic multicellularity". Preprint link: bit.ly/4ta06Gq Sharing and comments are much appreciated. 1/4 413351
Reposted by Enrico Sandro ColizziMegan Bergkessel @slowgoing.bsky.social · 24/03/2026Now out in its final form, our investigation of how Pseudomonas aeruginosa manages resources to permit ongoing adaptations to environment during starvation: journals.asm.org/doi/10.1128/... Congrats to first author @findunmun1.bsky.social, and co-authors Claudia Hemsley and Elize Ambulte.journals.asm.orgPseudomonas aeruginosa dynamically prioritizes motility and resource recycling during prolonged starvation | mSystemsMolecular microbiology has traditionally focused on exponential growth in model organisms as the preferred context in which to study bacterial physiology, especially the regulation of new protein synt... 12710
Reposted by Enrico Sandro ColizziÁkos T Kovács @evolvedbiofilm.bsky.social · 16/03/2026Do you know a paper describing evolution of (enhanced) biofilm formation upon phage exposure? Thus not an experiment where biofilm is used for EE, but EE of a bacterial population leading to protection against phage via biofilm matrix/aggregation/etc Asking for a friend's teaching lecture 6145
Reposted by Enrico Sandro ColizziBram van Dijk 🏳️🌈 @bramvandijk.bsky.social · 23/03/2026Phd Position alert 🚨 Join our project ASTRAfun (Adaptation and Starship Traffic in Root-Associated fungi), in which we will use computational models to unveil the hidden dynamics of fungal evolution. It’s not going to be just regular fun. It’s going to ASTRAfun. 🤓 www.uu.nl/en/organisat...uu.nlPhD Position in Computational Modelling of Fungal EvolutionHow do giant mobile elements called ‘Starships’ reshape fungal plant pathogens? Help us computationally model their spread and impact in nature and agriculture! 12527
Enrico Sandro Colizzi @escolizzi.bsky.social · 10/03/2026Curious about the origin of development during the transition to multicellularity? A very belated preprint alert: bit.ly/4rr2mHU Reproduction emerges from ecological interactions at the onset of multicellularity. A short 🧵 with lots of videos... 310235
Reposted by Enrico Sandro ColizziBram van Dijk 🏳️🌈 @bramvandijk.bsky.social · 25/02/2026In case you missed it: our review titled "Spatial structure: shaping the ecology and evolution of microbial communities" is out! 🚨 Let me hit you with some highlights on why spatial structure matters. (and why you should care!) Sharing is appreciated 🙏 🧵👇 doi.org/10.1093/fems... 314788
Reposted by Enrico Sandro ColizziMarcel Bäcker @marcelbaecker.bsky.social · 12/02/2026Most microbes don't live in shaking flasks; spatial structure shapes how microbes interact and evolve at every scale, as we discuss in our recent review @jeroenmeijer.bsky.social @simonvanvliet.bsky.social @bedutilh.bsky.social @bramvandijk.bsky.social and others academic.oup.com/femsre/artic... 🧵👇academic.oup.comSpatial structure: shaping the ecology and evolution of microbial communitiesSpatial structure naturally emerges in microbial communities, shaping growth, interactions, and evolution, and revealing how microscale processes scale up 25029
Reposted by Enrico Sandro ColizziPhil Holliger @philholliger.bsky.social · 13/02/2026Have a look at the Insight on Research story on our Science paper www.science.org/doi/10.1126/... on the @mrclmb.bsky.social website: mrclmb.ac.uk/news-events/... including a great little animation from LMB VisLab.mrclmb.ac.ukBridging the gap from chemistry to life: discovery of a tiny RNA that can copy itself | MRC Laboratory of Molecular BiologyLed by Edoardo Gianni, Philipp Holliger’s group in the LMB’s PNAC Division have identified a small self-replicating catalytic RNA (ribozyme), providing new ... 0156
Reposted by Enrico Sandro ColizziPhil Holliger @philholliger.bsky.social · 13/02/2026Great summaries of our paper www.science.org/doi/10.1126/... in Science: www.science.org/doi/epdf/10.... and New Scientist: www.newscientist.com/article/2515... and in the Science museum blog: blog.sciencemuseum.org.uk/in-the-begin...science.orgA small polymerase ribozyme that can synthesize itself and its complementary strandThe emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ... 093
Reposted by Enrico Sandro ColizziPhil Holliger @philholliger.bsky.social · 13/02/2026New paper from my group in @science.org : "A small polymerase ribozyme that can synthesise itself and its complementary strand" www.science.org/doi/10.1126/... Outstanding work by @edogia.bsky.social 115339
Reposted by Enrico Sandro ColizziMRC Laboratory of Molecular Biology @mrclmb.ac.uk · 13/02/2026How did life arise from simple chemical building blocks? New #LMBResearch led by @edogia.bsky.social in @philholliger.bsky.social group has identified a small self-replicating ribozyme that could be the answer. Read more: mrclmb.ac.uk/news-events/... 05331
Reposted by Enrico Sandro ColizziEdoardo Gianni @edogia.bsky.social · 13/02/2026How could a simple self-replicating system emerge at the origins of life? RNA polymerase ribozymes can replicate RNA, but existing ones are so large that their self-replication seems impossible. Could they be smaller? Excited to share our latest work in @science.org on a new small polymerase. 1/nscience.orgA small polymerase ribozyme that can synthesize itself and its complementary strandThe emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ... 10509215
Reposted by Enrico Sandro ColizziSimon van Vliet @simonvanvliet.bsky.social · 11/02/2026Wrapping up a productive week: very glad to have contributed to this review on how spatial structure shapes microbial ecology and evolution, led by @marcelbaecker.bsky.social, @bedutilh.bsky.social, @bramvandijk.bsky.social and many others. doi.org/10.1093/fems...doi.orgSpatial structure: shaping the ecology and evolution of microbial communitiesSpatial structure naturally emerges in microbial communities, shaping growth, interactions, and evolution, and revealing how microscale processes scale up 33815
Reposted by Enrico Sandro ColizziMeike Wortel @meikewortel.bsky.social · 09/01/2026New year, new conferences! Consider submitting to the symposium on Fitness landscapes and Genotype-phenotype maps, linking computational and experimental approaches (organising with @n-martin.bsky.social; @dbajic.bsky.social invited spreaker) at SMBE (28/6-2/7)! Abstract deadline February 3rd! 096
Reposted by Enrico Sandro ColizziChristian Kost @kostchristian.bsky.social · 07/01/2026Very cool paper by Jyotsna Kalathera et al. from @iamsamayp.bsky.social 's-lab on Bottleneck size drives the evolution of cooperative traits in an aggregative multicellular myxobacterium just out @plosbiology.org Congratulations to all coauthors. journals.plos.org/plosbiology/...journals.plos.orgBottleneck size drives the evolution of cooperative traits in an aggregative multicellular myxobacteriumPopulation bottlenecks shape the evolution of cooperative traits in Myxococcus xanthus through life cycle trade-offs. This study shows that stringent bottlenecks favor growth and sporulation, while re... 1169
Reposted by Enrico Sandro ColizziSainsbury Laboratory Cambridge University (SLCU) @slcuplants.bsky.social · 11/12/2025🌱 2x David Sainsbury Career Development Fellowships at @slcuplants.bsky.social Unique opportunity for early-career researchers to launch their own independent research programme in quantitative plant development, with generous support & world-class facilities. www.cam.ac.uk/jobs/david-s... 03941
Reposted by Enrico Sandro ColizziMarjon de Vos @lizscurious.bsky.social · 05/12/2025New preprint: www.biorxiv.org/content/10.6...biorxiv.orgPyocyanin produced by Pseudomonas aeruginosa Creates Legacy Effects That Boost Antibiotic Resistance Evolution in EnterococciPolymicrobial infections are small communities of multiple interacting bacterial species. Interactions among constituent species may modify the growth of community members in the presence of antibioti... 1178
Reposted by Enrico Sandro ColizziWill Ratcliff @wcratcliff.bsky.social · 09/12/20251/28 New preprint up, which I think is the best theoretical idea I've ever had. We asked a simple question: what are the costs of investment into non-reproductive somatic cells? Turns out these costs decrease with the *logarithm* of organism size! www.biorxiv.org/content/10.6...biorxiv.orgThe fitness costs of reproductive specialization scale inversely with organismal sizeThe evolution of reproductive specialization represents a fundamental innovation in multicellular life, yet the conditions favoring its evolution remain poorly understood. Here, we develop a populatio... 615467
Reposted by Enrico Sandro ColizziÁkos T Kovács @evolvedbiofilm.bsky.social · 06/12/2025Extensive horizontal transfer of transposable elements shapes fungal mobilomes @currentbiology.bsky.social by @jromeijn.bsky.social et al from @mfseidl.bsky.social www.cell.com/current-biol...cell.comExtensive horizontal transfer of transposable elements shapes fungal mobilomesRomeijn et al. reveal that horizontal transposon transfer is widespread in fungi, contributing up to 70% of transposon content in some taxa. The authors uncover thousands of events across diverse line... 06831
Reposted by Enrico Sandro ColizziPaolo Crosetto @paolocrosetto.bsky.social · 30/11/2025Since AI slop is again all over Scientific Reports, a thread on the economics of grey-zone publishing. Why does slop keep getting published? What does it mean for science? How can we stop this? Background readings: Understand the strain: tinyurl.com/2b6wxx5r Stop the drain: tinyurl.com/3jfscscy 411172
Reposted by Enrico Sandro ColizziRonja Hulst @ronbaas.bsky.social · 01/12/2025Excited to share our new review: The evolutionary role of mutational robustness: theoretical insights, in Trends in Genetics! Our review distils the main theoretical insights into when robustness evolves and how it shapes evolvability. www.sciencedirect.com/science/arti...sciencedirect.comThe evolutionary role of mutational robustness: theoretical insightsMutational robustness, the ensemble of mechanisms that allow organisms to maintain a stable phenotype despite genetic mutations, affects adaptive evol… 1216
Reposted by Enrico Sandro ColizziScott Coyle @cellraiser.bsky.social · 18/11/2025Cellular structure self-organizes through an interplay between internal mechanisms and external cues. The single-celled suctorian P. collini builds a trap structure to capture large prey using microtubule feeding tentacles, creating feedback between cell morphology and prey availability. 210225
Reposted by Enrico Sandro ColizziJoshua Hamm @joshnhamm.bsky.social · 18/11/2025Ever since publishing our observations of the predatory behaviour of Ca. Nha. antarcticus people have asked me why it would want to kill its host. My perspective discussing the ecological factors that I believe led to this behaviour is out now in mSystems: doi.org/10.1128/msystems.01475-25doi.orgNutrient availability affects optimal growth strategy in predatory DPANN | mSystemsThe bacterial and archaeal domains each possess a major clade that appears to be predominantly host-associated (1–3). These two lineages, Patescibacteriota and DPANN archaea (named for the Diapherotri... 1157
Reposted by Enrico Sandro ColizziWill Ratcliff @wcratcliff.bsky.social · 13/11/2025Let me use this as an opportunity to talk about Jordi et al's very cool paper, now out in PNAS 🧪: pmc.ncbi.nlm.nih.gov/articles/PMC... You can read our news and views here: www.pnas.org/doi/10.1073/...pmc.ncbi.nlm.nih.gov 14025
Reposted by Enrico Sandro ColizziEric Pollitt @stapheric.bsky.social · 30/10/2025Mycobacterium smegmatis Expands Across Surfaces by Hydraulic Sliding - Environmental Microbiology Reports enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... - Our new paper is out!enviromicro-journals.onlinelibrary.wiley.com 195