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Enrico Sandro Colizzi

@escolizzi.bsky.social
1.4K followers 836 following 42 posts

Tenured scientist @INRIA, Lyon. Studying how microbes evolve new stuff with computer simulations.

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Reposted by Enrico Sandro Colizzi
Sara Mitri @saramitri.bsky.social · 22/09/2026
Check out @sulheim.bsky.social's paper! The latest from our lab showing that some species do actually coexist robustly, no matter what or how much you feed them, whether the environment around them is constant, and whether or not they depend on each other metabolically for amino acids and vitamins.
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Kelley Gallagher @kelleygallagher.bsky.social · 07/08/2026
Excited to share our lab's first paper on the evolution of a c-di-GMP-controlled sigma factor: journals.asm.org/doi/10.1128/...
journals.asm.org
Regulatory divergence and functional diversification of a c-di-GMP-controlled sigma factor in Actinomycetota | mSystems
Mounting global responses to dynamic environmental conditions is a crucial function that bacterial cells must perform. Global regulatory networks are most often studied in individual species, however,...
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Reposted by Enrico Sandro Colizzi
Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 22/09/2026
This is very cool @kelleygallagher.bsky.social et al Regulatory divergence and functional diversification of a c-di-GMP-controlled sigma factor in Actinomycetota doi.org/10.1128/msys...
doi.org
Regulatory divergence and functional diversification of a c-di-GMP-controlled sigma factor in Actinomycetota | mSystems
Mounting global responses to dynamic environmental conditions is a crucial function that bacterial cells must perform. Global regulatory networks are most often studied in individual species, however,...
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Reposted by Enrico Sandro Colizzi
Alvaro Sanchez @asanchezlab.bsky.social · 21/08/2026
New preprint from the lab: The Latent Simplicity of Microbial Ecological Interactions www.biorxiv.org/content/10.6... We're excited about this one. We find that high-order microbial interactions often obey simple linear laws making microbial communities far more predictable than one might expect
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Christian Kost @kostchristian.bsky.social · 24/08/2026
Very happy that our paper Obligate cross-feeding of metabolites is common in soil microbial communities just came out in Nature Microbiology. See here 👇 Paywalled version: www.nature.com/articles/s41... Free read-only version: rdcu.be/fBHAb
nature.com
Obligate cross-feeding of metabolites is common in soil microbial communities - Nature Microbiology
Cultivation-dependent techniques, computational analyses and genome-scale metabolic models show widespread amino acid auxotrophies, suggesting that soil microorganisms exist within integrated ecologic...
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Reposted by Enrico Sandro Colizzi
Alvaro Sanchez @asanchezlab.bsky.social · 21/08/2026
New preprint from the lab: The Latent Simplicity of Microbial Ecological Interactions www.biorxiv.org/content/10.6... We're excited about this one. We find that high-order microbial interactions often obey simple linear laws making microbial communities far more predictable than one might expect
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Christian Kost @kostchristian.bsky.social · 08/07/2026
Happy to announce that a new opinion paper of our group just came out: A conceptual framework to dissect emergent functions in microbial communities with @swagatika.bsky.social @sharvari27.bsky.social @anjanaprasad.bsky.social @palshubharthi.bsky.social www.sciencedirect.com/science/arti...
sciencedirect.com
A conceptual framework to dissect emergent functions in microbial communities
Microbial communities play vital roles in diverse ecosystems and are key drivers of numerous industrial or health-related applications. In many cases,…
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Reposted by Enrico Sandro Colizzi
Cameron Thrash @jcamthrash.bsky.social · 29/06/2026
Cyanobacterial flocculation as a defence against bacterial predation academic.oup.com/ismej/advanc... #jcampubs
academic.oup.com
Cyanobacterial flocculation as a defence against bacterial predation
Abstract. Many cyanobacteria are capable of flocculation: the formation of floating linked assemblages of many thousands of cells. Flocculation is a highly
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🍁 Alex Smith 🍁 @alexsmithants.bsky.social · 07/07/2026
🧪 Physiology is a hidden dimension of diversity in the radiation of woodland salamanders | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Physiology is a hidden dimension of diversity in the radiation of woodland salamanders | PNAS
Morphological evolution can be explosive, producing visually spectacular adaptive radiations like Caribbean anoles, Malagasy vangas, and African Ri...
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Reposted by Enrico Sandro Colizzi
Pawel Burkhardt @pawelburkhardt.bsky.social · 16/06/2026
How ancient are the building blocks of animal sensory systems? Key components of animal sensory systems evolved before animals. We find that choanoflagellates possess diverse & spatially segregated TRP channels, pointing to ancient origins of sensory specialization. doi.org/10.64898/202...
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Leah McPhillips @leahmcphillips.bsky.social · 09/06/2026
Excited to share this is now published in @narjournal.bsky.social 🎉 see the preprint thread below for a summary of our findings on plasmids with multiple partition systems using the Streptomyces plasmid SCP1 as a model! academic.oup.com/nar/article/...
academic.oup.com
Stable inheritance of the Streptomyces linear plasmid SCP1 by dual ParABS partition systems
Abstract. Low-copy-number plasmids often rely on dedicated maintenance mechanisms, such as partitioning systems, to ensure stable inheritance across genera
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Tung Le @tunglejic.bsky.social · 08/06/2026
now published!!! @johninnescentre.bsky.social @leahmcphillips.bsky.social academic.oup.com/nar/article/...
academic.oup.com
Stable inheritance of the Streptomyces linear plasmid SCP1 by dual ParABS partition systems
Abstract. Low-copy-number plasmids often rely on dedicated maintenance mechanisms, such as partitioning systems, to ensure stable inheritance across genera
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Jeroen Meijer @jeroenmeijer.bsky.social · 01/06/2026
Thrilled that our paper "Eco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communities" is out! 🎉🦠🧬 www.science.org/doi/10.1126/... w/ @paulbrainey.bsky.social, Petros Skiadas, Paulien Hogeweg, @bedutilh.bsky.social
science.org
Eco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communities
A single bacteriophage can dominate microbial communities yet only evolves when migration changes its ecological context.
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Sarah Robinson @robinsonsci.bsky.social · 28/05/2026
www.cam.ac.uk/jobs/researc...
cam.ac.uk
Research Assistant - Robinson Group
Applications are invited for a Research Assistant position in the group of Dr Sarah Robinson at the Sainsbury Laboratory Cambridge University. The successful applicant will be part of a group that inv...
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Reposted by Enrico Sandro Colizzi
Drew Bridges @bridgesbio.bsky.social · 29/04/2026
New preprint: "A branching cell-fate decision in biofilm dispersal enables long-term surface persistence." When V. cholerae biofilms disperse, it isn’t a uniform exit, rather, an opportunity to bet-hedge. A subpopulation of cells stay behind, primed for biofilm regrowth. doi.org/10.64898/202...
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Paula García-Galindo @ggalindopaula.bsky.social · 22/04/2026
Phenotypic cliffs paper is out! We observe in RNA that phenotypic sites which typically keep the phenotype unchanged through mutation (robust), are also the ones which lead to the most change when they do. royalsocietypublishing.org/rsif/article...
royalsocietypublishing.org
Phenotypic cliffs in the RNA genotype–phenotype map
Abstract. Point mutations of a genotype can leave the phenotype unchanged, or change it, in some cases radically. The extent of this phenotypic change can
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Reposted by Enrico Sandro Colizzi
Theory of Living Matter Group @tlmcambridge.bsky.social · 14/04/2026
New lineup of exciting speakers for the Easter term. Sign up to our mailing list for updated zoom links 📝📩
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Sam von der Dunk @derdunk.bsky.social · 09/04/2026
Very excited with the online publication of our modeling work on the evolution of sexual reproduction during obligate endosymbiosis: doi.org/10.1098/rstb.... The first publication of Alkmini Zania 🎉; together with Paulien Hogeweg.
doi.org
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Christian Kost @kostchristian.bsky.social · 14/04/2026
@shrylishreekar.bsky.social and me wrote a commentary on Chunhui Hao's and @stuwest.bsky.social et al.'s recent paper "Cooperation and the evolution of bacterial niche breadth" in PNAS. Please find our commentary here: www.pnas.org/doi/10.1073/...
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Reposted by Enrico Sandro Colizzi
laurenmlui.bsky.social @laurenmlui.bsky.social · 08/04/2026
With a 135 complete, circular Pelagibacter genomes, we have answered some of the most outstanding questions about what is often considered the most abundant organism on the planet, with roughly 10 million times more individuals in the ocean than stars in the universe. Check out our preprint.
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Vaughn Cooper @vscooper.micropopbio.org · 30/03/2026
Now out in AEM @asm.org! 🎉🧪 *High school student-isolated mutants 👉🏻 novel genetic causes of biofilm-associated adaptations *We learn how diversity arises quickly and is maintained *EvolvingSTEM enables scalable research in classrooms & promotes scientific literacy journals.asm.org/eprint/FBU9M...
journals.asm.org
Genetic diversification of Pseudomonas fluorescens maintained by multi-niche selection within biofilms | Applied and Environmental Microbiology
Bacterial biofilms dominate microbial life; however, their evolutionary genetics remain incompletely understood. Extensive replication of biofilm selection experiments by secondary school students can...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 29/03/2026
On the architecture and evolution of prokaryotic multicellularity Preprint from @escolizzi.bsky.social www.authorea.com/doi/full/10....
authorea.com
On the architecture and evolution of prokaryotic multicellularity
AbstractProkaryotes form multicellular structures under both natural and experimental conditions, based on developmental programs that sometimes echo those known from eukaryotes. Recent research has i...
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Reposted by Enrico Sandro Colizzi
SPP2389 - Emergent Functions of Bacterial Multicellularity @spp2389.bsky.social · 26/03/2026
What started out as a student project has grown over the last 2 years into a full-fledged review! So many thanks to @escolizzi.bsky.social for leading this multicellular effort and sharing your evolutionary wisdom with us 🫶🏻🦠
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Enrico Sandro Colizzi @escolizzi.bsky.social · 26/03/2026
How common is multicellularity in bacteria? And archaea? And how does it evolve? We wrote a short review "On the architecture and evolution of prokaryotic multicellularity". Preprint link: bit.ly/4ta06Gq Sharing and comments are much appreciated. 1/4
An overview of bacterial multicellular formations: biofilms, filaments, free-floating aggregates, motile collectives and fruiting bodies. For each form, we mention an analogous eukaryotic multicellular form (respectively animal epitelia, filaments in fungi, Volvox, Dictyostelium/social animals, Dictyostelium and other slime moulds)
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Megan Bergkessel @slowgoing.bsky.social · 24/03/2026
Now out in its final form, our investigation of how Pseudomonas aeruginosa manages resources to permit ongoing adaptations to environment during starvation: journals.asm.org/doi/10.1128/... Congrats to first author @findunmun1.bsky.social, and co-authors Claudia Hemsley and Elize Ambulte.
journals.asm.org
Pseudomonas aeruginosa dynamically prioritizes motility and resource recycling during prolonged starvation | mSystems
Molecular microbiology has traditionally focused on exponential growth in model organisms as the preferred context in which to study bacterial physiology, especially the regulation of new protein synt...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 16/03/2026
Do you know a paper describing evolution of (enhanced) biofilm formation upon phage exposure? Thus not an experiment where biofilm is used for EE, but EE of a bacterial population leading to protection against phage via biofilm matrix/aggregation/etc Asking for a friend's teaching lecture
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Bram van Dijk 🏳️‍🌈 @bramvandijk.bsky.social · 23/03/2026
Phd Position alert 🚨 Join our project ASTRAfun (Adaptation and Starship Traffic in Root-Associated fungi), in which we will use computational models to unveil the hidden dynamics of fungal evolution. It’s not going to be just regular fun. It’s going to ASTRAfun. 🤓 www.uu.nl/en/organisat...
uu.nl
PhD Position in Computational Modelling of Fungal Evolution
How do giant mobile elements called ‘Starships’ reshape fungal plant pathogens? Help us computationally model their spread and impact in nature and agriculture!
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Enrico Sandro Colizzi @escolizzi.bsky.social · 10/03/2026
Curious about the origin of development during the transition to multicellularity? A very belated preprint alert: bit.ly/4rr2mHU Reproduction emerges from ecological interactions at the onset of multicellularity. A short 🧵 with lots of videos...
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Bram van Dijk 🏳️‍🌈 @bramvandijk.bsky.social · 25/02/2026
In case you missed it: our review titled "Spatial structure: shaping the ecology and evolution of microbial communities" is out! 🚨 Let me hit you with some highlights on why spatial structure matters. (and why you should care!) Sharing is appreciated 🙏 🧵👇 doi.org/10.1093/fems...
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Marcel Bäcker @marcelbaecker.bsky.social · 12/02/2026
Most microbes don't live in shaking flasks; spatial structure shapes how microbes interact and evolve at every scale, as we discuss in our recent review @jeroenmeijer.bsky.social @simonvanvliet.bsky.social @bedutilh.bsky.social @bramvandijk.bsky.social and others academic.oup.com/femsre/artic... 🧵👇
academic.oup.com
Spatial structure: shaping the ecology and evolution of microbial communities
Spatial structure naturally emerges in microbial communities, shaping growth, interactions, and evolution, and revealing how microscale processes scale up
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Phil Holliger @philholliger.bsky.social · 13/02/2026
Have a look at the Insight on Research story on our Science paper www.science.org/doi/10.1126/... on the @mrclmb.bsky.social website: mrclmb.ac.uk/news-events/... including a great little animation from LMB VisLab.
mrclmb.ac.uk
Bridging the gap from chemistry to life: discovery of a tiny RNA that can copy itself | MRC Laboratory of Molecular Biology
Led by Edoardo Gianni, Philipp Holliger’s group in the LMB’s PNAC Division have identified a small self-replicating catalytic RNA (ribozyme), providing new ...
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Phil Holliger @philholliger.bsky.social · 13/02/2026
Great summaries of our paper www.science.org/doi/10.1126/... in Science: www.science.org/doi/epdf/10.... and New Scientist: www.newscientist.com/article/2515... and in the Science museum blog: blog.sciencemuseum.org.uk/in-the-begin...
science.org
A small polymerase ribozyme that can synthesize itself and its complementary strand
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...
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Phil Holliger @philholliger.bsky.social · 13/02/2026
New paper from my group in @science.org : "A small polymerase ribozyme that can synthesise itself and its complementary strand" www.science.org/doi/10.1126/... Outstanding work by @edogia.bsky.social
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MRC Laboratory of Molecular Biology @mrclmb.ac.uk · 13/02/2026
How did life arise from simple chemical building blocks? New #LMBResearch led by @edogia.bsky.social in @philholliger.bsky.social group has identified a small self-replicating ribozyme that could be the answer. Read more: mrclmb.ac.uk/news-events/...
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Edoardo Gianni @edogia.bsky.social · 13/02/2026
How could a simple self-replicating system emerge at the origins of life? RNA polymerase ribozymes can replicate RNA, but existing ones are so large that their self-replication seems impossible. Could they be smaller? Excited to share our latest work in @science.org on a new small polymerase. 1/n
science.org
A small polymerase ribozyme that can synthesize itself and its complementary strand
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...
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Simon van Vliet @simonvanvliet.bsky.social · 11/02/2026
Wrapping up a productive week: very glad to have contributed to this review on how spatial structure shapes microbial ecology and evolution, led by @marcelbaecker.bsky.social, @bedutilh.bsky.social, @bramvandijk.bsky.social and many others. doi.org/10.1093/fems...
doi.org
Spatial structure: shaping the ecology and evolution of microbial communities
Spatial structure naturally emerges in microbial communities, shaping growth, interactions, and evolution, and revealing how microscale processes scale up
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Meike Wortel @meikewortel.bsky.social · 09/01/2026
New year, new conferences! Consider submitting to the symposium on Fitness landscapes and Genotype-phenotype maps, linking computational and experimental approaches (organising with @n-martin.bsky.social; @dbajic.bsky.social invited spreaker) at SMBE (28/6-2/7)! Abstract deadline February 3rd!
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Christian Kost @kostchristian.bsky.social · 07/01/2026
Very cool paper by Jyotsna Kalathera et al. from @iamsamayp.bsky.social 's-lab on Bottleneck size drives the evolution of cooperative traits in an aggregative multicellular myxobacterium just out @plosbiology.org Congratulations to all coauthors. journals.plos.org/plosbiology/...
journals.plos.org
Bottleneck size drives the evolution of cooperative traits in an aggregative multicellular myxobacterium
Population bottlenecks shape the evolution of cooperative traits in Myxococcus xanthus through life cycle trade-offs. This study shows that stringent bottlenecks favor growth and sporulation, while re...
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Sainsbury Laboratory Cambridge University (SLCU) @slcuplants.bsky.social · 11/12/2025
🌱 2x David Sainsbury Career Development Fellowships at @slcuplants.bsky.social Unique opportunity for early-career researchers to launch their own independent research programme in quantitative plant development, with generous support & world-class facilities. www.cam.ac.uk/jobs/david-s...
Interior of Sainsbury Laboratory building showing experimental laboratories on left with floor-to-ceiling glass facing into the main central avenue with people walking on stairs and sitting at study boxes. Lots of natural light and views to the Cambrdge University Botanic Garden. Overlay text "Join SLCU" and logos and closing date of 15 January 2026.
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Marjon de Vos @lizscurious.bsky.social · 05/12/2025
New preprint: www.biorxiv.org/content/10.6...
biorxiv.org
Pyocyanin produced by Pseudomonas aeruginosa Creates Legacy Effects That Boost Antibiotic Resistance Evolution in Enterococci
Polymicrobial infections are small communities of multiple interacting bacterial species. Interactions among constituent species may modify the growth of community members in the presence of antibioti...
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Will Ratcliff @wcratcliff.bsky.social · 09/12/2025
1/28 New preprint up, which I think is the best theoretical idea I've ever had. We asked a simple question: what are the costs of investment into non-reproductive somatic cells? Turns out these costs decrease with the *logarithm* of organism size! www.biorxiv.org/content/10.6...
biorxiv.org
The fitness costs of reproductive specialization scale inversely with organismal size
The evolution of reproductive specialization represents a fundamental innovation in multicellular life, yet the conditions favoring its evolution remain poorly understood. Here, we develop a populatio...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 06/12/2025
Extensive horizontal transfer of transposable elements shapes fungal mobilomes @currentbiology.bsky.social by @jromeijn.bsky.social et al from @mfseidl.bsky.social www.cell.com/current-biol...
cell.com
Extensive horizontal transfer of transposable elements shapes fungal mobilomes
Romeijn et al. reveal that horizontal transposon transfer is widespread in fungi, contributing up to 70% of transposon content in some taxa. The authors uncover thousands of events across diverse line...
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Paolo Crosetto @paolocrosetto.bsky.social · 30/11/2025
Since AI slop is again all over Scientific Reports, a thread on the economics of grey-zone publishing. Why does slop keep getting published? What does it mean for science? How can we stop this? Background readings: Understand the strain: tinyurl.com/2b6wxx5r Stop the drain: tinyurl.com/3jfscscy
An obviously AI-generated figure with AI slop and fake text all over it, recently published in Scientific Reports.
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Ronja Hulst @ronbaas.bsky.social · 01/12/2025
Excited to share our new review: The evolutionary role of mutational robustness: theoretical insights, in Trends in Genetics! Our review distils the main theoretical insights into when robustness evolves and how it shapes evolvability. www.sciencedirect.com/science/arti...
sciencedirect.com
The evolutionary role of mutational robustness: theoretical insights
Mutational robustness, the ensemble of mechanisms that allow organisms to maintain a stable phenotype despite genetic mutations, affects adaptive evol…
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Scott Coyle @cellraiser.bsky.social · 18/11/2025
Cellular structure self-organizes through an interplay between internal mechanisms and external cues. The single-celled suctorian P. collini builds a trap structure to capture large prey using microtubule feeding tentacles, creating feedback between cell morphology and prey availability.
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Joshua Hamm @joshnhamm.bsky.social · 18/11/2025
Ever since publishing our observations of the predatory behaviour of Ca. Nha. antarcticus people have asked me why it would want to kill its host. My perspective discussing the ecological factors that I believe led to this behaviour is out now in mSystems: doi.org/10.1128/msystems.01475-25
doi.org
Nutrient availability affects optimal growth strategy in predatory DPANN | mSystems
The bacterial and archaeal domains each possess a major clade that appears to be predominantly host-associated (1–3). These two lineages, Patescibacteriota and DPANN archaea (named for the Diapherotri...
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Will Ratcliff @wcratcliff.bsky.social · 13/11/2025
Let me use this as an opportunity to talk about Jordi et al's very cool paper, now out in PNAS 🧪: pmc.ncbi.nlm.nih.gov/articles/PMC... You can read our news and views here: www.pnas.org/doi/10.1073/...
pmc.ncbi.nlm.nih.gov
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Eric Pollitt @stapheric.bsky.social · 30/10/2025
Mycobacterium smegmatis Expands Across Surfaces by Hydraulic Sliding - Environmental Microbiology Reports enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... - Our new paper is out!
enviromicro-journals.onlinelibrary.wiley.com
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