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Hunter Hill

@hunterhill.bsky.social
569 followers 606 following 82 posts

Postdoc in the Cooper lab, MT PhD in Drosophila genetics, currently interested in genome interactions and mechanisms of mitotic failure. Drosophila, heterochromatin, Wolbachia, endosymbiosis, embryogenesis, chromosomes, Mitosis, Meiosis, histones

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Reposted by Hunter Hill
Tom Sasani @tomsasani.bsky.social · 02/09/2026
How long does DNA damage last? @aaronquinlan.bsky.social and I found evidence that lesions are transmitted from parent (P0) to offspring (F1) in C. elegans. If they segregate unrepaired for multiple cell divisions, lesions generate multi-allelism in the F1 germline. www.biorxiv.org/content/10.6...
biorxiv.org
Inherited DNA damage generates multi-allelic mutations in C. elegans
Exogenous and endogenous mutagens generate a wide variety of DNA lesions, including bulky adducts, chemical modifications, and single- or double-stranded breaks. A phenomenon called “lesion segregation,” in which lesions evade repair and persist for multiple cell divisions, has recently been documented in tumors and healthy somatic tissues from mice and humans, respectively. Persistent lesions can generate multi-allelic variants (MAVs) by serving as templates for multiple rounds of error-prone replication. By reanalyzing data from a large C. elegans mutagenesis experiment, we observed robust evidence for MAVs at a small fraction (∼0.2%) of mutated sites in the offspring of strains treated with alkylating agents. Because these sequencing data were derived from the progeny of a single F1 animal — itself the offspring of a mutagenized P0 — all mutations should be biallelic. The presence of multi-allelic variation implies that some DNA lesions are transmitted to the F1 zygote, evade repair, and are repeatedly bypassed by error-prone polymerases during embryogenesis. We suspect that many more lesions are inherited than is suggested by MAV prevalence, and that a large fraction of biallelic mutations are also caused by inherited lesions. Our results demonstrate that DNA lesions serve as durable, transgenerational templates for mutagenesis in C. elegans . We speculate that lesion segregation in the early embryo may be a source of mosaicism and genetic diversity in humans, as well. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, https://ror.org/01cwqze88, R01HG012252
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Genetics Society of America @genetics-gsa.bsky.social · 01/09/2026
🪰 A new study in #GENETICS demonstrates how the Stellate meiotic drive system in #Drosophila is active in contemporary populations, revealing its evolutionary significance. 🔗 buff.ly/UqEQJrQ
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Cedric Feschotte @cedricfeschotte.bsky.social · 22/07/2026
Super proud and excited about this work, led masterfully by Peiwei Chen! A fun and fruitful collaboration with department colleagues Andy Clark & Alexei Aravin. After 30 yrs of studying transposons, this is one of the very first times I see them jump in real time in their natural host! Hurrah! 🥳
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SeYeon Chung @seyeonchung.bsky.social · 28/06/2026
So grateful for the new Kathy Matthews Endowment for the Bloomington Drosophila Stock Center. A wonderful tribute by Kathy's husband, Lawrence Washington, that will help preserve Kathy's legacy and support the fly community for years to come. biology.indiana.edu/news-events/...
biology.indiana.edu
Major gift to establish endowment for IU Drosophila Stock Center
IU Biology news: The IU Stock Center maintains thousands of documented, living genetic strains of Drosophila melanogaster, a small fruit fly that has served as one of science’s most powerful tools for...
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Hunter Hill @hunterhill.bsky.social · 18/06/2026
Excited to share this preprint!! with @brandonscooper.bsky.social and Bill Sullivan We tested whether endosymbiotic Wolbachia can alter host gene expression through chromatin modifications that persist from spermatogenesis to adulthood.
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The University of Utah @utah.edu · 21/05/2026
The @hypothesisfund.bsky.social has awarded a prestigious seed grant to @uofubiology.bsky.social professor Talia Karasov, who researches the microbial weapons bacteria inflict on each other in an evolutionary arms race that might hold the keys to addressing the threat of antibiotic resistance.
attheu.utah.edu
U biologist wins seed grant to deepen research into tailocins, the weapons microbes use on each other - @theU
Hypothesis Fund supports early-stage innovative research that aims to improve the health of people and the planet.
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Jeremy Berg @jeremymberg.bsky.social · 13/05/2026
My quote of the day The more that you read, the more things you will know. The more that you learn, the more places you'll go. Dr. Seuss
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Michael Borg @borglab.bsky.social · 02/04/2026
Our work on chromatin evolution in brown algae is now published in @natecoevo.nature.com! We show that developmentally complex brown algae evolved without epigenetic silencing pathways long thought universal, underscoring why non-model lineages are important to study. www.nature.com/articles/s41...
Undaria pinnatifida gametophyte
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Greg Copenhaver @copenhaverlab.bsky.social · 06/03/2026
Our (@jeffsekelsky.bsky.social, Corbin Jones & me) #Meiosis, Recombination & Evolution of Sex class @uncchapelhill.bsky.social geeked out about #BChromosomes w/ Patrick Ferree from @scrippscollege.bsky.social about his @plosbiology.org paper on female meiotic drag in Nasonia: doi.org/10.1371/jour...
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Prasad Jallepalli, MD, PhD @prasad.bsky.social · 25/02/2026
“These days, if you’re not a mad scientist, you’re not paying attention.” @standupforscience.bsky.social
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Raquel A Oliveira @raoliveira.bsky.social · 17/02/2026
🧵 Thread: What happens when transcription isn’t properly shut off during mitosis? Our new preprint explores just that 👇 www.biorxiv.org/content/10.6...
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Laura Helmuth @laurahelmuth.bsky.social · 05/02/2026
If you're afraid to ask someone for a recommendation, please don't be. It's part of the job of being a mentor, editor, teacher, advisor, former boss, etc. to write recommendations or politely decline. (I wish I could go back in time and tell my former self this.)
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Rav @rvbdrm.com · 09/01/2026
BIG FIGHT AT POLAND’S WROCLAW ZOO!!!
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Joe Hanly @hanliconius.bsky.social · 04/12/2025
Excellent title - and I'm a sucker for mapping any de novo mutations in insect pigment and pattern mutants. In this case, the culprit seems to be an ncRNA!?!? resjournals.onlinelibrary.wiley.com/doi/full/10....
resjournals.onlinelibrary.wiley.com
Eye can see clearly now: Identifying the locus associated with a white‐eye mutation in honey bees (Apis mellifera)
We performed a community science investigation with the beekeepers nationwide to find phenotypic mutants. Alongside a beekeeper in Kentucky, we performed a GWAS to identify a region associated with ...
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Matthew Hahn @3rdreviewer.bsky.social · 03/12/2025
New paper on minimal NNs for phylogenetic inference, with former grad student, Ben Rosenzweig: arxiv.org/abs/2512.02223
arxiv.org
On the Approximation of Phylogenetic Distance Functions by Artificial Neural Networks
Inferring the phylogenetic relationships among a sample of organisms is a fundamental problem in modern biology. While distance-based hierarchical clustering algorithms achieved early success on this ...
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Mia Levine @levine-lab.bsky.social · 28/11/2025
How to keep in step when your (protein) partner speeds up… Here we investigated the adaptive remodeling of a protein-protein interaction surface essential for telomere protection. Congrats to whole team! www.science.org/doi/10.1126/...
science.org
Rapid compensatory evolution within a multiprotein complex preserves telomere integrity
Intragenomic conflict with selfish genetic elements spurs adaptive changes in subunits of essential multiprotein complexes. Whether and how these adaptive changes disrupt interactions within such comp...
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Mark Peifer (He, him) @peiferlabunc.bsky.social · 21/11/2025
OMG--read this thread. Remarkable clever use of a trick to visualize plasmid competition that reveals key insights into evolution!!!! 🧪
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The Interactive Fly @interactivefly.bsky.social · 26/08/2025
Crain, A. T., Nevil, M., Leatham-Jensen, M. P., ..., B., Matera, A. G., McKay, D. J., Duronio, R. J. (2024). Redesigning the Drosophila histone gene cluster: an improved genetic platform for spatiotemporal manipulation of histone function. Genetics, 228(1) academic.oup.com/genetics/art...
academic.oup.com
Redesigning the Drosophila histone gene cluster: an improved genetic platform for spatiotemporal manipulation of histone function
Abstract. Mutating replication-dependent (RD) histone genes is an important tool for understanding chromatin-based epigenetic regulation. Deploying this to
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Nick Desnoyer @nickdesnoyer.bsky.social · 11/08/2025
Introducing the 1,000 Flower Collection 🧬🌹 I’m creating 1,000 genetically designed flowers each crafted with new colors, patterns, and shapes. Here’s how I’m making it happen… and how you can join me on this journey 🧵(1/7)
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Nick Desnoyer @nickdesnoyer.bsky.social · 11/08/2025
To promote the collection, I’ve launched a designer clothing line where synthetic biology meets aesthetics. I will give out 100 free limited edition shirts to the first who retweet and order with their handle in the name! Available here → nickdesnoyer.com 🧵(6/7)
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Max Kozlov @maxkozlov.bsky.social · 15/07/2025
NEW: In an unprecedented move, the NIH will soon disinvite dozens of scientists about to take positions on advisory councils that make final decisions on grant funding. NIH staff were told to select others aligned with the Trump administration and told to expect placements by political appointees.
nature.com
Exclusive: NIH to dismiss dozens of grant reviewers to align with Trump priorities
The move would undo years of work, leaving advisory councils understaffed, and without the full expertise needed for reviews.
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Alexandria Ocasio-Cortez @aoc.bsky.social · 03/07/2025
I don’t think anyone is prepared for what they just did w/ ICE. This is not a simple budget increase. It is an explosion - making ICE bigger than the FBI, US Bureau of Prisons, DEA,& others combined. It is setting up to make what’s happening now look like child’s play. And people are disappearing.
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Lucas Waltzer @lucaswaltzer.bsky.social · 03/06/2025
#drosophila @flybase.bsky.social request emergency funding: "As it stands, by the end of July, 2025, there will be no future updates to FlyBase, and in the worst case scenario access to the website will also be lost" => please donate! www.philanthropy.cam.ac.uk/give-to-camb...
philanthropy.cam.ac.uk
Drosophila Genetic Database
The Drosophila Genetic Database, FlyBase, is on the brink of collapse due to the sudden termination of the FlyBase NIH grant, which includes salaries for 5 literature curators based at the University ...
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eric lai @lucksmith.bsky.social · 29/05/2025
i encourage all to comment on the federal move to switch scientific staff to political appointees. this would be yet another disaster to the scientific process, unbiased pursuit of knowledge and medicine. deadline june 7. www.federalregister.gov/documents/20... www.regulations.gov/commenton/OP...
regulations.gov
Regulations.gov
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Anthony Michael Kreis @anthonymkreis.bsky.social · 29/05/2025
Treating a new Covid strain like a crime and not a public health issue is deranged.
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Colette Delawalla, PhD @cdelawalla.bsky.social · 25/05/2025
Do not give them an INCH! It's not: Well, maybe there are some areas where DEI has become too much a focus. It's: FREE COUNTRIES DON'T SEND OUT BANNED WORDS LISTS TO THEIR SCIENTISTS It's not: Well, science isn't perfect... It's: FREE COUNTRIES DO NOT HAVE SCIENCE COMMISSARS
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EpiCypher @epicypher.bsky.social · 21/05/2025
🧬NEW review article from Henikoff and Ahmad about emerging epigenomic mapping technologies to study chromatin regulation. Very comprehensive - great for beginners and experts alike! www.sciencedirect.com/science/arti...
Summary of emerging technologies to study chromatin-protein interactions on native chromatin / in vivo.
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Mike Feigin 🥯 @mikefeigin.bsky.social · 13/05/2025
For all the scientists who voted for Trump (and I know many of you), I hope the war on DEI was worth it.
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Angie Rasmussen @angierasmussen.bsky.social · 02/05/2025
If you're wondering why there's been so much insistence lately that COVID-19 was a lab leak, here's why: it is going to be an example for why all biomedical research & public health work should be defunded. No evidence supports a lab leak, but it's used to justify cutting NIH's budget by 40%.
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Cedric Feschotte @cedricfeschotte.bsky.social · 30/04/2025
💥🥳 At long last, our latest paper is out! Gag proteins of endogenous retroviruses are required for zebrafish development www.pnas.org/doi/10.1073/... Led heroically by Sylvia Chang & @jonowells.bsky.social A study which has changed the way I think of #transposons! No less! 🧵 1/n
pnas.org
Gag proteins encoded by endogenous retroviruses are required for zebrafish development | PNAS
Transposable elements (TEs) make up the bulk of eukaryotic genomes and examples abound of TE-derived sequences repurposed for organismal function. ...
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Josh Marshall @joshtpm.bsky.social · 07/04/2025
You may be fearing your 401k is no longer enough for you to retire. But with all the cuts to NIH and Medicare you also won't live as long. So the policies are integrated.
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Tristan Snell @tristansnell.bsky.social · 23/03/2025
If only America would protect school children the way it protects Teslas.
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Mekhail Lab at U. Toronto 🍁🇨🇦 @karimmekhail.bsky.social · 18/03/2025
🚀 New Paper Alert! Our latest @natrevmcb.bsky.social explores how nuclear and genome organization drive DNA double-strand break repair! 🧬 📖 Free access: rdcu.be/edViW Please 🔄 ❤️
rdcu.be
Nuclear and genome dynamics underlying DNA double-strand break repair
Nature Reviews Molecular Cell Biology - Changes in nuclear and genome organization promote the repair of DNA double-strand breaks and genome stability. Processes that are involved include the...
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Paul Noth @paulnoth.bsky.social · 12/03/2025
Mine in today’s @newyorker.com
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Hunter Hill @hunterhill.bsky.social · 09/03/2025
Proud to be a part of this community! We had a great turnout for #Standupforscience at UMontana. www.youtube.com/watch?v=e0s3...
youtube.com
Protestors rally for science at University of Montana campus
YouTube video by NBC Montana
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Carolyn Ibberson @cbibberson.bsky.social · 08/03/2025
So much this.
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Hunter Hill @hunterhill.bsky.social · 28/02/2025
Local coverage on budget cuts, thanks @nbcnews.com nbcmontana.com/news/local/u...
nbcmontana.com
University of Montana researchers warn of ripple effects from funding cuts
Lab leaders, scientists and professors with the University of Montana released a letter Thursday on the potential impact cutting funds from the government will
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Michelle Francl @michellefrancl.bsky.social · 09/02/2025
This is utterly terrifying. The lack of critical thinking is stunning. nbcmontana.com/newsletter-d...
nbcmontana.com
Proposed bill would ban administration of mRNA vaccines in Montana
Legislators heard a bill on Friday that would make Montana the first state to ban the use of mRNA vaccines.
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Hunter Hill @hunterhill.bsky.social · 07/02/2025
#FluorescenceFriday #Drosophila chromosomes!
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HunterLab.bsky.social @hunterlab.bsky.social · 31/01/2025
Sadly, our colleague and friend Scott Hawley passed away this morning. He was an irreplaceable presence and force for good in the meiosis an Drosophila communities and will be sorely missed.
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Vaughn Cooper @vscooper.micropopbio.org · 29/01/2025
To all constituents, journalists, and representatives interested in today’s hearings for RFK Jr, please read, consider, and ask the following questions of him. On behalf of the Coalition for the Life Sciences cc: @needhibhalla.bsky.social www.coalitionforlifesciences.org
We write to you on behalf of the scientific community to raise serious concerns about Robert F.
Kennedy, Jr., nominee for the Secretary of Health and Human Services. We represent the Coalition for Life
Sciences, an alliance of scientists and scientific organizations focused since 1990 on (1) promoting policies and
practices that foster innovative, impactful research and training in the life sciences, and (2) ensuring that public
policy is informed by sound scientific evidence.
The leader of the Department of Health and Human Services needs to make evidence-based decisions
supported by validated scientific data. Adherence to such data-driven policymaking has made America the gold
standard for biomedical discovery and public health policy.
Mr. Kennedy has repeatedly demonstrated that he does not use scientific evidence in developing his
positions and, in fact, often denies substantial bodies of scientific research to sow doubt over health interventions
long established to be safe and effective. Some of these positions have already cost lives by influencing individual
behavior. Providing him with a platform to embed them in US policy would have sweeping consequences, putting
potentially millions of American lives at risk. The United States is the global leader in biomedical research, which has improved health on many fronts and
generated a biotechnology industry that contributes nearly $100 billion each year1 to our economic and national security.
One of the great successes of biomedical research is management of infectious diseases. In the 20th century, widespread
vaccination removed infectious disease from the leading cause of death in the United States for nearly all age groups. This
safe prevention strategy has saved millions of lives and trillion of dollars in the U.S. economy. Changing vaccine policy or
even voicing counter-factual statements about vaccine safety will lower vaccination rates and lead to the widespread
reemergence of deadly diseases like measles, typhoid, and tuberculosis and hasten the next global pandemic.
We recommend you ask the following questions at Mr. Kennedy’s confirmation hearing.
1. 2. 3. 4. 5. The Finance Committee’s responsibilities include oversight of Medicare.
• Do you support flu vaccination for older adults?
o Estimates of economic costs are >$85 billion each year, of which two-thirds are attributable to
adults over 65 and ~90% of annual deaths from influenza are in people older than 65.
2
• Do you support RSV vaccination for older adults?
o A recent study found that prior to availability of the RSV vaccine, there were 4 million RSV cases
in adults over 60 years of age and an economic burden of $6.6 billion each year.3
o Can you provide rough comparisons of RSV vs. influenza virus in terms of symptomatic disease,
hospitalizations, and deaths among adults over 65?
If the emerging avian influenza virus mutates to become transmissible between people, it is likely to hit
seniors the hardest. What will you do as HHS Secretary to prepare for such a threat?
• Will you support the development of a vaccine?
• Will you promote the use of effective public health interventions?

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6. • lHow will you, as HHS Secretary, monitor infectious disease trends across our borders in the absence of
WHO data and information?
You have been quoted as saying that the NIH should stop research on infectious diseases for 8 years7 to focus on
chronic, non-communicable diseases.
• What are the potential costs to stopping research into infectious pathogens when they continue to evolve, when
so many health costs are due to infections, when new causes of infectious disease are appearing and expanding
their scope?
• Without research, how will you defend Americans from the increasing threat from the novel avian influenza
virus? What are the potential costs if that virus mutates to become transmissible between people?
• Can you provide a summary of NIH’s investment in infectious disease research versus chronic disease
(cardiovascular, metabolic, neuropsychiatric and other disorders)?
7. You are widely identified with promoting the debunked claim that vaccines cause autism.
• What would it take to convince you of the published conclusions of 5 randomized controlled trials, 1 controlled
clinical trial, 27 cohort studies, 17 case-control studies, 5 time-series trials, 1 case cross-over trial, 2 ecological
studies, and 6 self-controlled case series studies involving 14.7 million –children –– all8 of which have
demonstrated that there is no link between vaccines and autism?
• What are the likely consequences and costs of reducing the number of people who receive the following
vaccines: (MMR for measles, mumps, and rubella; polio; human papilloma virus; hepatitis B virus; etc.)
• Many have noted that your efforts to reduce the deployment of measles vaccine in Samoa 6 years ago led to
over 80 childhood deaths from measles. How did that experience affect your views on vaccination?
• You have been critical of the vaccine approval process. Who should be in charge of the design of clinical trialsfor vaccines during your tenure at DHHS? Who should judge whether they can be used?
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Harmit Singh Malik @harmitmalik.bsky.social · 28/01/2025
If you have been affected by the fires in LA, or are concerned about your ability to keep precious Drosophila strains going during the latest funding crisis, we will host your strains as a backup. Please email me. Please amplify. If you are also able to host fly strains, add your name as well.
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Dave Levitan @davelevitan.bsky.social · 28/01/2025
Per an NIH source: “Discussions with colleagues have suggested that if the universities all come together and raise hell about the delays to funding caused by not holding meetings, that might move the needle. From every state. There are well-funded universities in red states that will be impacted.”
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Mekka Okereke @mekka.mekka-tech.com · 23/01/2025
"our commitment to an enterprise rooted in respect and inclusion is appropriate and necessary." "creativity and innovation in the merchandise and services that we offer," - Costco Board. 98% of Costco shareholders agreed with the board.👍🏿 Segregationists denied.
axios.com
Costco shareholders vote against anti-DEI proposal
More than 98% of Costco shareholders voted down an anti-DEI proposal Thursday at the company's annual shareholders meeting.
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Hunter Hill @hunterhill.bsky.social · 21/01/2025
I am excited to share the first paper from my postdoc in the Cooper lab. Hopefully, this is useful for anyone working on PEV image quantification in Drosophila. Please reach out if you have any questions or comments, and stay tuned for more updates! academic.oup.com/biomethods/a...
academic.oup.com
Quantification of variegated Drosophila ommatidia with high-resolution image analysis and machine learning
Abstract. A longstanding challenge in biology is accurately analyzing images acquired using microscopy. Recently, machine learning (ML) approaches have fac
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Rog lab at the University of Utah @theroglab.bsky.social · 15/01/2025
New preprint from the lab! We defined the kinetics of strand invasion during meiosis in C. elegans. Great work from Antonia, Henry and Divya. www.biorxiv.org/content/10.1...
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Brandon S. Cooper @brandonscooper.bsky.social · 08/12/2024
We are hiring an Assistant Professor of Microbiology, Immunology & Infectious Disease (broadly defined) at the University of Montana. Great colleagues in a great place. I’m happy to answer any questions. Please apply! apply.interfolio.com/159494
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 09/12/2024
Continuing to go through my trove of cool videos... here is a classic from my work with Philipp Keller's team at @hhmijanelia.bsky.social A developing fly embryo imaged with a SiMView #lightsheet microscope augmented with our Autopilot self-alignment system. www.nature.com/articles/nbt... 🧪🔬🪰💻
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Miriam Posner @miriamposner.com · 06/12/2024
Maybe one of the reasons there are so many unhinged academics is that in order to keep your job, you’re constantly required to tout yourself as a Scholar of World-Historical Significance, even as your office’s ceiling tiles slowly dislodge themselves to fall on your head.
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Oded Rechavi @odedrechavi.bsky.social · 05/12/2024
Scared to share this after 10 freaking years of waiting, but here we go: We found that temperature *perception* can change the biology of the next generations, even when “it’s just in the parents' head”. Read how C. elegans neurons control epigenetic inheritance! www.biorxiv.org/content/10.1...
biorxiv.org
Perception of Temperature Even in the Absence of Actual Change is Sufficient to Drive Transgenerational Epigenetic Inheritance
Can processes occurring in one individuals nervous system influence the physiology of the descendants? Here we explored the provocative hypothesis that parents sensation or perception of environmental...
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