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Haley Randolph

@herandolph.bsky.social
328 followers 410 following 13 posts

Helen Hay Whitney postdoctoral research fellow human genomics // immune response variation // gene-environment interactions

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Reposted by Haley Randolph
American Society of Human Genetics (ASHG) @geneticssociety.bsky.social · 12/08/2026
Designing a “cell village”-based fitness screening approach and developing Townlet, @mfwells.bsky.social, @hjp.bsky.social, & co of @ajhgnews.bsky.social's latest article identify rare variant-associated overgrowth & genetic modifiers of NPC proliferation & lead sensitivity: bit.ly/4xsj4dm
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Reposted by Haley Randolph
Waggoner Lab @labwaggoner.bsky.social · 09/05/2026
The ISG Atlas: a loss-of-function analysis characterizes antiviral properties of interferon stimulated genes www.nature.com/articles/s41... @natcomms.nature.com
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Nicholas Mancuso @nmancuso.bsky.social · 14/04/2026
Thrilled to see this out. What started out as a chat several years back with @drfejzo.bsky.social about leveraging publicly available data on hyperemesis gravidarum GWAS turned into a wonderful collaboration with April Shu, @mvaudel.bsky.social, @xwww.bsky.social and many others! rdcu.be/fdl9k
rdcu.be
Multi-ancestry genome-wide association study of severe pregnancy nausea and vomiting
Nature Genetics - Multi-ancestry GWAS meta-analysis identifies risk loci for severe nausea and vomiting of pregnancy. Downstream analyses explore maternal and fetal contributions of these loci and...
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Jeff Downey @jeffdowney11.bsky.social · 21/02/2026
Happy to share our latest work out now in Immunity @cp-immunity.bsky.social. doi.org/10.1016/j.im.... We provide insight into how influenza infections detrimentally impact cardiovascular health. Building on clinical observations, we show that influenza damages the heart and lowers its function.
doi.org
Redirecting
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Fil Swirski @filswirski.bsky.social · 09/02/2026
Influenza hijacks myeloid cells to inflict type-I interferon-fueled damage in the heart: Immunity www.cell.com/immunity/ful...
cell.com
Influenza hijacks myeloid cells to inflict type-I interferon-fueled damage in the heart
Respiratory infection and cardiovascular disease risk are tightly intertwined clinically, but the mechanisms of this relationship are largely unknown. Here, Downey et al. reveal how influenza traffics...
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Waggoner Lab @labwaggoner.bsky.social · 09/02/2026
Influenza hijacks myeloid cells to inflict type-I interferon-fueled damage in the heart @cp-immunity.bsky.social www.cell.com/immunity/ful... @jeffdowney11.bsky.social @filswirski.bsky.social
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Ben Strober @bennystrobes.bsky.social · 07/10/2025
Exciting updates!! (1) I just opened my lab at Boston Children’s Hospital (Harvard-affiliated) (2) I’m hiring a postdoc focused on integrating GWAS and functional genomic data. Reach out if you’re interested or connect at ASHG next week! (3) Learn more at stroberlab.com
stroberlab.com
Strober Lab
The Strober lab is a computational group at Boston Children's Hospital (a Harvard Medical School affiliated hospital) focused on developing statistical and machine learning tools applied to human gene...
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Haky Im @hakyim.bsky.social · 12/09/2025
I'm hiring a computational biologist interested in complex trait genetics using deep learning approaches. Reach out to me, if interested.
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Dr Abeba Birhane @abeba.blacksky.app · 06/08/2025
yet, I constantly find myself having to explain this in most spaces where important conversations and decisions (regulatory, policy, higher education, etc) take place
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Graham Coop @gcbias.bsky.social · 02/08/2025
It is depressing, but all too predictable, how swiftly we’ve gone from the Social Science Genetic Association Consortium offering reassurances about the uses of behavioural polygenic scores to one of their lead authors marketing embryo selection for IQ
Text from an FAQ in Okbay et al 20222: 
https://www.nature.com/articles/s41588-022-01016-z 
a similar same statement is made in an FAQ in 2025: https://www.biorxiv.org/content/10.1101/2025.05.14.653986v1.supplementary-material
Text reads:
"The results of SSGAC studies have sometimes been used by online platforms, including some companies, to predict individual outcomes. We recognize that returning individual genomic “results” can be a fun way to engage people in research and other projects and to feed or stoke their interest in genomics. But it is important that participants/users understand that these individual results are not meaningful predictions and should be regarded essentially as entertainment. Failure to make this point clear risks sowing confusion and undermining trust in genetics research"
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Jonathan Pritchard @jkpritch.bsky.social · 07/07/2025
Staff scientist position (computational): I am looking for a computational scientist to join my genomics lab at Stanford. They should have an outstanding skillset in ML/statistical methods for genomic applications, postdoc experience and a strong publication record. #sciencejobs
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Alexandria Ocasio-Cortez @aoc.bsky.social · 17/06/2025
ICE just arrested Brad Lander, the NYC Comptroller and one of the leading candidates for Mayor, without grounds. He was conducting routine immigration court work, escorting individuals from hearings. He asked ICE for their warrant - well within his legal rights. This is political intimidation.
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Dr Abeba Birhane @abeba.blacksky.app · 16/06/2025
what the actual fuck
As Nucleus acquires more customers, Asparouhov says the company’s insights will get even better, the results on a Nucleus dashboard automatically updating with new information. “At some point maybe there will be, like, phenotypic reporting, where you tell Nucleus, I have blue eyes, I have brown hair, maybe you come in for an IQ test, etc., and that actually improves the model,” he said. 

When asked if linking things like blue eyes, blonde hair, and IQ could be interpreted as eugenics, he clarified with a laugh, “I said brown hair!” 

Then, miming the same hand motion that Elon Musk performed following President Trump’s inauguration, Asparouhov joked, “My heart goes out to you.”
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Yoav Gilad @ygilad.bsky.social · 10/06/2025
If we want to connect genetic variation to disease, we need to move beyond baseline conditions. Our study shows that dynamic, context-specific regulation holds the key to understanding many unexplained GWAS signals. The preprint again: www.biorxiv.org/content/10.1...
biorxiv.org
Disease-associated loci share properties with response eQTLs under common environmental exposures
Many of the genetic loci associated with disease are expected to have context-dependent regulatory effects that are underrepresented in the transcriptomes of healthy, steady-state adult tissues. To un...
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Toño Urban Aragon @jaurban2204.bsky.social · 09/06/2025
Delighted to share that one of my major PhD projects has been published today in Current Biology. In this paper, we look into the genetic population structure and demographic histories of two populations in Sri Lanka: the Sinhalese and Adivasi [1/n]. www.cell.com/current-biol...
cell.com
Population histories of the Indigenous Adivasi and Sinhalese from Sri Lanka using whole genomes
Sri Lanka is home to diverse ethnic groups with different genetic histories. Urban Aragon et al. find that despite close genetic affinities, Indigenous Adivasi have more hunter-gatherer ancestry and l...
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Molly Przeworski @mollyprz.bsky.social · 23/05/2025
Now published in PNAS: www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Brent Richards @brent-richards.bsky.social · 22/05/2025
I didn't have much hope that we'd find genetic determinants of long-COVID, but after years of work, Vilma Aho, Tomoko Nakanisha, Hugo Zeberg and Hanna Ollila made it happen! (Among a few others :-)) www.nature.com/articles/s41...
nature.com
Genome-wide association study of long COVID - Nature Genetics
A genome-wide study by the Long COVID Host Genetics Initiative identifies an association between the FOXP4 locus and long COVID, implicating altered lung function in its pathophysiology.
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Reposted by Haley Randolph
Colin Carlson @colincarlson.bsky.social · 19/05/2025
“Should AI be allowed to review papers or grant proposals” always reveals a thing I think people don’t understand about algorithmic bias 🧵
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Haley Randolph @herandolph.bsky.social · 17/05/2025
PIs who think their research isn’t political: yes it is, it always is
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The American Journal of Human Genetics @ajhgnews.bsky.social · 12/05/2025
📣Online now from Fu et al! 📄Role of X chromosome and dosage-compensation mechanisms in complex trait genetics
cell.com
Role of X chromosome and dosage-compensation mechanisms in complex trait genetics
We show that the X chromosome, understudied in genome-wide association studies, contributes to complex traits in a manner shaped by dosage-compensation mechanisms. We find near-full X inactivation bal...
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Yoav Gilad @ygilad.bsky.social · 05/05/2025
www.biorxiv.org/content/10.1...
biorxiv.org
Disease-associated loci share properties with response eQTLs under common environmental exposures
Many of the genetic loci associated with disease are expected to have context-dependent regulatory effects that are underrepresented in the transcriptomes of healthy, steady-state adult tissues. To un...
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Reposted by Haley Randolph
Nature @nature.com · 24/04/2025
Scientists must push back against the threat of rising white nationalism and the dangerous and pseudoscientific ideas of eugenics go.nature.com/4jGqiUc
go.nature.com
Eugenics is on the rise again: human geneticists must take a stand
Scientists must push back against the threat of rising white nationalism and the dangerous and pseudoscientific ideas of eugenics.
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Sarah J. Jackson @sjjphd.bsky.social · 19/03/2025
They are coming for every university, if you think you’re safe because it hasn’t been yours yet I don’t know what to tell you. Join AAUP, refuse to comply, organize your colleagues
thedp.com
Trump administration freezes $175 million in federal funding to Penn
According to a White House tweet, Wednesday's decision is a result of Penn's
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Waggoner Lab @labwaggoner.bsky.social · 19/03/2025
Biomedical value of studying human diversity spotlighted by 5-nation asian Immune Diversity Atlas (AIDA) of circulating immune cells from healthy donors www.cell.com/cell/fulltex... @cellcellpress.bsky.social @jayshin.bsky.social
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Carl T. Bergstrom @carlbergstrom.com · 17/03/2025
The @nytimes.com just discovered parallel computing.
NY Times graphic.

Conventional computer: One task starts after another completes

AI computing: tasks are divided into small parts and happen at the same time.
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Yoav Gilad @ygilad.bsky.social · 26/02/2025
How do you study gene-environment (GxE) interactions in humans? Well, there's probably no way to avoid studying each exposure individually, but what about the cellular context? If you choose directed differentiation, you have to study GxE one cell type at a time. If you choose an organoid system -
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Haley Randolph @herandolph.bsky.social · 31/01/2025
for Sasha & his family www.gofundme.com/f/rememberin...
gofundme.com
Donate to Remembering Sasha Kirsanov: In Our Hearts Always, organized by Michelle Dumler-McKeever
In memory of Alexandr “Sasha” Kirsanov. We will keep you in o… Michelle Dumler-McKeever needs your support for Remembering Sasha Kirsanov: In Our Hearts Always
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Haley Randolph @herandolph.bsky.social · 31/01/2025
absolutely devastating — i feel incredibly grateful to have had you as a coach and you will be missed dearly, Sasha 🤍
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Neil Shubin @neilshubin.bsky.social · 28/01/2025
Here’s what’s what at UChicago. Not good.
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Joe Thornton @joethorntonlab.bsky.social · 28/01/2025
The sword has now been brandished over civil society, including scientists, universities, and other NGOs. Who, including university presidents, will have any backbone in defending their jnstitutions’ missions? Or will they take on the Zuckerberg/ Bezos pose? www.nytimes.com/live/2025/01...
nytimes.com
Trump Administration Live Updates: White House Orders Federal Grants Pause (Gift Article)
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Jonathan Pritchard @jkpritch.bsky.social · 24/01/2025
Very excited about this new work from our lab! Explainer thread coming soon @minetoota.bsky.social
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bioRxivpreprint @biorxivpreprint.bsky.social · 24/01/2025
Innate Immune Memory is Stimulus Specific www.biorxiv.org/content/10.1101/202…
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Yoav Gilad @ygilad.bsky.social · 17/01/2025
My book, An Intuitive Primer on Effective Functional Genomics Study Design, is published! I’d really appreciate it if you could help spread the word, and I’d love to hear your thoughts and feedback. I hope people will find it useful. It’s available on Amazon: tinyurl.com/mx2hewen
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Jesse Raab @jraab.bsky.social · 15/01/2025
I am in R dependency hell
media.tenor.com
a mascot with the number 3 on his jersey
ALT: a mascot with the number 3 on his jersey
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Ivan Zanoni @lozanzi.bsky.social · 12/01/2025
#WeekendRead! #MysterySolved! Why people with the same mutation present or not a pathology? @bogunoviclab.bsky.social &co show @Nature that epigenetic controls the random expression of 1 allele in 5% of all genes, explaining incomplete penetrance for monogenic inborn error of immunity #IEI diseases!
nature.com
Monoallelic expression can govern penetrance of inborn errors of immunity - Nature
Somatically determined preferential allelic expression of select genes that when mutated cause inborn errors of immunity corresponds with disease phenotypes, suggesting that the penetrance and express...
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Waggoner Lab @labwaggoner.bsky.social · 08/01/2025
Human embryo editing against disease is unsafe and unproven despite rosy predictions @shaicarmi.bsky.social @wiringthebrain.bsky.social www.nature.com/articles/d41... Heritable polygenic editing: the next frontier in genomic medicine? @juliansavulescu.bsky.social www.nature.com/articles/s41...
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Bogunovic Lab @bogunoviclab.bsky.social · 01/01/2025
What Happens When Some Cells Are More Dad Than Mom (and Vice Versa)? Latest from us. Published today. News here www.cuimc.columbia.edu/news/what-ha... article here: www.nature.com/articles/s41... @stewart_ojay @BogunovicLab and a huge international team thank you 🙏🏼
cuimc.columbia.edu
What Happens When Some Cells Are More Dad Than Mom (and Vice Versa)?
A new study shows that some of our cells favor genes of one parent or the other and can explain a longstanding mystery of why some people with disease-causing genes experience no symptoms.
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Haley Randolph @herandolph.bsky.social · 01/01/2025
one unanticipated downside of grad school was that it took the fun out of reading for me. this year, i started picking up books again and fell back in love 🥹 #booksky
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Science Magazine @science.org · 23/12/2024
Women leave academia at higher rates than men at every career stage, and attrition is especially high among three groups: tenured faculty, women in non-STEM fields, and women employed at less prestigious institutions, a #ScienceAdvances analysis finds.
scim.ag
Gender and retention patterns among U.S. faculty
Women faculty are more likely to leave their jobs than men, most often due to workplace climate, rather than work-life balance.
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Tuuli Lappalainen @tuuliel.bsky.social · 18/12/2024
🌟 Exciting news: The Leena Peltonen School of Human Genetics returns in 2025! We're excited to bring PhD students together with an all-star list of leaders in human genetics. 📅 July 27-31, 2025 📍 Wellcome Genome Campus, UK 📝 Apply by March 7 at www.lpshg.com
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Jeff Spence @jeffspence.github.io · 17/12/2024
What do GWAS and rare variant burden tests discover, and why? Do these studies find the most IMPORTANT genes? If not, how DO they rank genes? Here we present a surprising result: these studies actually test for SPECIFICITY! A 🧵on what this means... (🧪🧬) www.biorxiv.org/content/10.1...
biorxiv.org
Specificity, length, and luck: How genes are prioritized by rare and common variant association studies
Standard genome-wide association studies (GWAS) and rare variant burden tests are essential tools for identifying trait-relevant genes. Although these methods are conceptually similar, we show by anal...
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medRxivpreprint @medrxivpreprint.bsky.social · 12/12/2024
Impact of disease-associated chromatin accessibility QTLs across immune cell types and contexts www.medrxiv.org/content/10.1101/202…
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Haley Randolph @herandolph.bsky.social · 06/12/2024
very excited to share the last chunk of my PhD work, now available on @biorxivpreprint.bsky.social! in this work, we explore how cis-regulatory variation and gene-environment (GxE) interactions influence immune response diversity directly in a cohort of hospitalized COVID-19 patients 1/n
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popgengoogling.bsky.social @popgengoogling.bsky.social · 22/11/2024
Top 10 Hill-Robertsons to Die On
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Toufic Mayassi @touficmayassi.bsky.social · 21/11/2024
1/ Keen to share the story of my postdoc research out in @natureportfolio.bsky.social! We built a massive resource characterizing the spatial landscape of the gut—and yes, we dug deep into the biology too. If you’ve got a minute, let me walk you through the story. 🧵👇 www.nature.com/articles/s41...
nature.com
Spatially restricted immune and microbiota-driven adaptation of the gut - Nature
Intestinal regionalization is characterized by robust and resilient structural cell states and the intestine can adapt to environmental stress in a spatially controlled manner through crosstalk betwee...
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Arrested Development @bluthquotes.lucille2.com · 14/11/2024
From Arrested Development, GOB Bluth says to Michael Bluth "I heard the jury's still out on science."
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