Sign in

Giacomo Potente

@gpotente.bsky.social
145 followers 231 following 25 posts

Postdoc at BGI Research in Wuhan 🇨🇳 Plant evolutionary genomics 🧬 Studying sex chromosomes in liverworts

PostsRepliesMedia
Reposted by Giacomo Potente
ERGA - European Reference Genome Atlas @ergabiodiv.bsky.social · 30/09/2026
#ERGAReads | Distinct genomic architectures but the same gene underlie the convergent evolution of a plant supergene 🌸🧬 www.science.org/doi/10.1126/... #genomes #plantgenomics #evolution #supergenes #comparativegenomics @gpotente.bsky.social
science.org
Distinct genomic architectures but the same gene underlie the convergent evolution of a plant supergene
High-quality genome assemblies from multiple plant species reveal different paths of evolution in supergenes.
042
Reposted by Giacomo Potente
Tanja Slotte @tanjaslotte.bsky.social · 23/09/2026
Interested in testing hypotheses on pollen evolution using genomic data? Apply for our open 4-year PhD student position at Stockholm University! Application via the SU website, deadline Oct 24, 2026. #evolution #pollen #pollinationmode #plants #genomics #RNAseq su.varbi.com/what:job/job...
su.varbi.com
Doktorand i ekologi och evolution
Institutionen för ekologi, miljö och botanik (DEEP) bedriver forskning och utbildning vid Arrheniuslaboratorierna på campus Frescati. Vi är cirka 100 medarbetare, inklusive doktorander och postdok
11627
Reposted by Giacomo Potente
Darrin T. Schultz @dts.bsky.social · 19/08/2026
Genes thrown together by a fusion-with-mixing or regular inversion can then stay together for hundreds of millions of years. We call this entanglement (sorry, physicists): a new neighborhood becomes hard to separate, plausibly because the new neighbors begin sharing regulation (but often neutral).
A diagram of a thoroughly mixed chromosome with red and blue genes interleaved. Curved arrows connect regulatory elements to genes from the other original chromosome, forming a web of cross-connections that would be broken if the mixing were reversed.
1104
Reposted by Giacomo Potente
Caitlin E. McDonough-Goldstein @ideaspermatheca.bsky.social · 17/08/2026
How do we navigate the semantic labyrinth of sex in biology? doi.org/10.1093/icb/icag093 In developing a @treeofsex.bsky.social 2.0 ontology, we have encountered many versions of sex. In this paper, we come together to explore places of contention and make connections across concepts of sex.
doi.org
Navigating the Semantic Labyrinth of “Sex” in the Study of Reproductive Trait Evolution
Synopsis. “Sex” is a compound of many different concepts that contribute to a multiplicity of meanings. As a result, “sex” appears in a wide range of scien
12516
Reposted by Giacomo Potente
PlantEvolution 🌱🌾 @plantevolution.bsky.social · 03/08/2026
Many years ago, my lab helped to discover YUCCAs. Later, Jia-Wei Wang in the lab sussed out the role of miR156s in a range of developmental processes. And now YUCCA and miR156 reappear as partners in this beautiful paper from the Lenhard lab! www.science.org/doi/10.1126/... #plantscience
04011
Reposted by Giacomo Potente
Kat Kerlin @katkerlin.bsky.social · 29/07/2026
Some avocados are female in the morning and male in the afternoon, while others are on the opposite schedule. This helps them avoid self-pollination. How do they do it? A @ucdavis.bsky.social study explains. www.ucdavis.edu/food/news/st...
ucdavis.edu
Study Reveals How Avocados Reverse Sexes Throughout the Day
Some avocados are female in the morning and male in the afternoon, while others are on the opposite schedule. How avocados do this has been unclear — until now, thanks to a UC Davis study.
28552173
Reposted by Giacomo Potente
Jamie Walters @bioboatr.bsky.social · 29/07/2026
Y and W sex chroms are enigmatic. Compared to the rest of the genome, they show distinct structure and diversity, and are notoriously difficult to assemble. Work led by @mdalikova.bsky.social investigates these patterns for the W chromosome of silkworm, Bombyx mori www.biorxiv.org/content/10.6...
biorxiv.org
Wrong but useful: Bombyx silkworm W chromosome assemblies are flawed but still capture strongly reduced diversity of repetitive DNA
Degenerate sex chromosomes ( e.g., the Y or W) remain among the most difficult regions of eukaryotic genomes to assemble because they are highly repetitive and structurally complex. While many recent ...
11711
Reposted by Giacomo Potente
Ian Henderson @hendersi.bsky.social · 25/07/2026
CRISPR-mediated centromere fission generates neochromosomes with distorted meiotic inheritance in Arabidopsis biorxiv.org/content/10.6... new preprint from us - includes changing the Arabidopsis karyotype from 5 -> 6 chromosomes using Cas9 & outcomes of 5/6 chromosome hybrid meiosis
06430
Reposted by Giacomo Potente
Mario Vallejo-Marin @nicrodemo.bsky.social · 21/07/2026
Very happy to see this study out! The transition from outcrossing to selfing involve convergent patterns of flower trait covariation academic.oup.com/aob/article/...
0143
Reposted by Giacomo Potente
Jill Hamilton @jillahamilton.bsky.social · 09/07/2026
The Schatz Center is recruiting a postdoctoral scholar with experience in whole-genome resequencing to study how demography, genetic variation, and selection interact to contribute to range expansion and adaptation. Come join us!! #evolutionarygenomics psu.wd1.myworkdayjobs.com/PSU_Academic...
psu.wd1.myworkdayjobs.com
Postdoctoral Scholar - Adaptive Evolutionary Genomics
APPLICATION INSTRUCTIONS: CURRENT PENN STATE EMPLOYEE (faculty, staff, technical service, or student), please login to Workday to complete the internal application process. Please do not apply here, a...
01621
Reposted by Giacomo Potente
Mario Vallejo-Marin @nicrodemo.bsky.social · 06/07/2026
PhD Position at Uppsala University. Sophie Karrenberg’s Lab. the project is about sex chromosome evolution in plants. Come join us! Deadline 22 July. www.uu.se/en/about-uu/...
uu.se
PhD position in evolutionary genomics - Uppsala University
PhD position in evolutionary genomics, Department of Ecology and Genetics, Uppsala University
02332
Reposted by Giacomo Potente
Thomas Lenormand @thomaslenormand.bsky.social · 29/06/2026
🚨Interested in #evolutionary #genomics and #popgen #theory? My lab just opened a 1+ year #postdoc position to work on sex chromosome dosage compensation. At #CEFE Montpellier 👉 bit.ly/4eMWDIh Informal enquiries welcome to me🙂 or Paul Saunders and Sylvain Glémin at #SMBE2026 Thanks for sharing!
0917
Reposted by Giacomo Potente
Current Biology @currentbiology.bsky.social · 12/06/2026
Here is some weekend reading for you 👉 www.cell.com/current-biol... Our special green issue, chokeful of reviews and short-format introductory pieces on plant #evolution! 🌱🌿🌵🍃 #Plants
12910
Giacomo Potente @gpotente.bsky.social · 12/06/2026
Darwin was fascinated by primrose flowers coming in two forms. We were fascinated by a different question: Wow does this system arise at genetically, and what happens when it evolves more than once? Our new paper in #ScienceAdvances @science.org has the answers! 🧵 www.science.org/doi/10.1126/...
science.org
Distinct genomic architectures but the same gene underlie the convergent evolution of a plant supergene
High-quality genome assemblies from multiple plant species reveal different paths of evolution in supergenes.
1104
Giacomo Potente @gpotente.bsky.social · 10/06/2026
Honored to have been invited to speak at the retirement symposium of my PhD advisor, Elena Conti 🙏 A wonderful celebration of a remarkable scientific career, shared with incredible scientists!
081
Reposted by Giacomo Potente
KamilSJaron.bsky.social @kamilsjaron.bsky.social · 05/06/2026
A big preprint from my group! Muller Elements are considered to be conserved in flies. We tested it by reconstructing the ancestral dipteran karyotype using 340 chromosomal genomes and suprise suprise, they're not... Led by @juliagries.bsky.social and Sam Ebdon. www.biorxiv.org/content/10.6... 🧵👇
Schema of three major chromosomal rearrangements leading to Muller Elements of Drosophila melanogaster since the common ancestor of Diptera.
14835
Giacomo Potente @gpotente.bsky.social · 19/05/2026
Glad to see this collaborative work now published in #GenomeBiology, uncovering unexpected diversity in the fascinating and underexplored UV #sexChromosomes of liverworts! 🧬 #Genomics #PlantGenomics #Evolution #EvolutionaryGenomics
000
Reposted by Giacomo Potente
Trends in Plant Science @cp-trendsplantsci.bsky.social · 29/04/2026
Bryophytes: natural incubators of new gene evolution #plantscience
dlvr.it
Bryophytes: natural incubators of new gene evolution
De novo gene origination from noncoding regions is a major source of genetic innovation. Dong et al. [1] (Nat. Genet. 2025; 57:2562–2569) reveal that bryophytes harbor an exceptionally high abundance of such genes, establishing them as a new and key system for studying the mechanisms and evolutionary consequences of new gene emergence in plants.
02111
Reposted by Giacomo Potente
Mike Barker @barkerms.bsky.social · 24/10/2025
I'm recruiting PhD students for the Barker Lab @uofa-eeb.bsky.social We study plant evolutionary genomics - polyploidy, hybridization & machine learning for genome evolution. Work with Selaginella, Xanthisma, Brassica & more. Funding available via CAMBIUM Fellowships. Reach out if interested! 🧬🌵🤖
The allotetraploid lycophyte Selaginella rupincola growing among the boulders at Cochise Stronghold in the Dragoon Mountains southeast of Tucson, Arizona.Xanthisma spinulosum growing outside a gym in Tucson, Arizona.Selaginella arizonica X eremophila hybrid zone at Alamo Canyon in Organ Pipe National Monument.A Dieteria sp. being visited by a skipper in the White Mountains of Arizona.
38056
Reposted by Giacomo Potente
闵娅(Min Ya; Minya) PhD @minyaaa.bsky.social · 05/10/2025
And look at this graphic abstract….. 😱🤯
719058
Giacomo Potente @gpotente.bsky.social · 08/10/2025
- "What should I say if someone calls - like, you’ve won the Nobel prize or something?" - "Just tell them I’m living my best life"
000
Giacomo Potente @gpotente.bsky.social · 02/10/2025
New preprint! In collaboration with @ergabiodiv.bsky.social, we explored the convergent #evolution of the S-locus #supergene controlling distyly in the #primrose family. Link: doi.org/10.1101/2025... #heterostyly #genomics #preprint #bioRxiv
074
Reposted by Giacomo Potente
Nature Genetics @natgenet.nature.com · 30/09/2025
✨Don't miss the N&V✨ 📰The dawn of bryophyte genomics is here. By Giacomo Potente, Yuling Yue & Péter Szövényi. ⬇️ www.nature.com/articles/s41...
nature.com
The dawn of bryophyte genomics is here - Nature Genetics
Bryophytes are a widespread group of land plants that occupy nearly all biomes, yet their genetics and evolutionary history have long remained underexplored. Now, a study that generates extensive genomic data for bryophytes highlights de novo gene formation and horizontal gene transfer as key forces that shape bryophyte diversity and adaptation.
011
Reposted by Giacomo Potente
Tanja Slotte @tanjaslotte.bsky.social · 02/09/2025
*Postdoc in Evolutionary genomics at Stockholm University* We are recruiting a postdoc for a large interdisciplinary project to investigate evolutionary drivers and genomic consequences of pollen evolution in response to pollination mode shifts in flowering plants. 1/5 su.varbi.com/what:job/job...
Purple pollen visible in a dissected flower of Linum grandiflorum, flowering flax, an insect-pollinated species.
17892
Reposted by Giacomo Potente
Dan MacGuigan @dmacguig.bsky.social · 22/09/2025
Check out our new preprint! We compare sequence versus synteny approaches for resolving a challenging #phylogenetic problem. In this case, synteny is far more informative! Also includes the first chromosome-level #genome for the enigmatic #fish family Gyrinocheilidae. doi.org/10.1101/2025...
46026
Giacomo Potente @gpotente.bsky.social · 22/09/2025
Excited to share that my first News & Views is out in @natgenet.nature.com! Together with Yuling Yue and @peterszovenyi.bsky.social, we highlight a landmark study presenting 100+ bryophyte genome assemblies and what they reveal about plant evolution. 🔗 www.nature.com/articles/s41...
nature.com
The dawn of bryophyte genomics is here - Nature Genetics
Bryophytes are a widespread group of land plants that occupy nearly all biomes, yet their genetics and evolutionary history have long remained underexplored. Now, a study that generates extensive geno...
111
Reposted by Giacomo Potente
Mario Vallejo-Marin @nicrodemo.bsky.social · 17/09/2025
Where does pollen go after leaving a flower? Our paper on pollen fates in buzz pollinated flowers is out. Congrats to the three brilliant undergrads that carried out this study from beginning to end! pollinationecology.org/index.php/jp...
Path diagram of pollen fates
2277
Giacomo Potente @gpotente.bsky.social · 18/08/2025
🌱 How does polyploidy shape plant reproduction? Excited to have contributed to a new study in @molbioevol.bsky.social on the loss of distyly in the polyploid Primula grandis! doi.org/10.1093/molb...
doi.org
Genomic Patterns of Loss of Distyly and Polyploidization in Primroses
Abstract. Transitions from outcrossing to selfing and from diploidy to polyploidy often co-occur in plants, likely because the ability to produce selfed se
000
Reposted by Giacomo Potente
Ecology Group Basel - Sabine Rumpf @ecologybasel.bsky.social · 14/08/2025
*Job alert* Come work with us! We have a fully funded 4yr #PhD position in #alpine & #Arctic plant #ecology available in our group @unibas.ch. The project includes fieldwork & connects to other ongoing projects on species range shifts & microclimate. jobs.unibas.ch/offene-stell... Please repost! 🌐🧪
jobs.unibas.ch
Universität Basel: PhD position in alpine and arctic plant ecology
The research group Ecology at the Department of Environmental Sciences at the University of Basel in Switzerland invites applications for a fully funded four-year PhD position in alpine and arctic pla...
01823
Giacomo Potente @gpotente.bsky.social · 11/07/2025
Delighted to see this piece celebrating 60 years of the University of Leicester’s Department of Genetics! 🧬 I spent a few months there as an Erasmus student and I have great memories of the brilliant people met there. Here’s to the next 60! 🥂
010
Reposted by Giacomo Potente
Melissa Wilson @sexchrlab.bsky.social · 11/07/2025
🚨Preprint🚨 Sex chromosome identification & genome curation from a single individual with SCINKD www.biorxiv.org/content/10.1... Incredible work led by @drpintothe2nd.bsky.social in collaboration w/ @drsimonegable.bsky.social @stuartvnielsen.bsky.social @tonygamble.bsky.social SE Keating & CH Smith
Graphical overview of the biological foundations of the proposed approach. Application of SCINKD to identify XY chromosomes in the Christmas island skinkApplication of SCINKD to identify previously unannotated sex chromosomes in the Lesser electric ray.
04624
Reposted by Giacomo Potente
Dario Cantù @cantulab.bsky.social · 05/07/2025
Some months later, work is now published @natcomms.nature.com www.nature.com/articles/s41...
nature.com
Evolutionary conservation of the grape sex-determining region in angiosperms and emergence of dioecy in Vitaceae - Nature Communications
Domesticated grapevine produces hermaphroditic flowers, while other Vitis species are dioecious. The authors report that the Vitis sex-determining region contains flowering-related genes conserved acr...
01511
Reposted by Giacomo Potente
Thiago Carvalho @cyrilpedia.bsky.social · 29/05/2025
'They say there's a need to create such a service in case U.S. funding is curtailed or the quantity or quality of its 37 million citations fall victim to politicization, or a DOGE-like chain saw attack of its trained personnel, sources told MedPage Today.' www.medpagetoday.com/special-repo...
medpagetoday.com
Germany Plans Global Alternative to PubMed
In the wake of a brief PubMed outage, team launches project to ensure uninterrupted access
23616
Reposted by Giacomo Potente
Rob Waterhouse @rmwaterhouse.bsky.social · 24/05/2025
The WorkflowHub registry has a global reach, with hundreds of research organisations involved, and more than 800 workflows registered. www.nature.com/articles/s41... #bioinformatics #FAIR
nature.com
WorkflowHub: a registry for computational workflows - Scientific Data
Scientific Data - WorkflowHub: a registry for computational workflows
087
Reposted by Giacomo Potente
Alexis Stamatakis @stamatak.bsky.social · 15/05/2025
RAxML-NG v2.0 beta is here github.com/amkozlov/rax... Features 1. Difficulty prediction academic.oup.com/mbe/article/... 2. Adaptive search academic.oup.com/mbe/article/... 3. Early Stop www.biorxiv.org/content/10.1... 4. Model selection 5. Rapid bootstrapping academic.oup.com/mbe/article/...
github.com
Release RAxML-NG v2.0-beta2 · amkozlov/raxml-ng
Main new features Adaptive tree search heuristic (Togkousidis 2023) , (Togkousidis 2024) Multiple fast branch support measures Integrated model testing Full Changelog: 1.2.2...2.0-beta2
06334
Reposted by Giacomo Potente
Maria Popova @mariapopova.bsky.social · 15/05/2025
Adventures in nature's nonbinary botany, with a side of Emily Dickinson – the poetic science of "perfect flowers" (the actual botanical term) www.themarginalian.org/2021/07/02/p...
themarginalian.org
Perfect Flowers: Adventures in Nature’s Nonbinary Botany, with a Side of Emily Dickinson
Rewilding the landscape of possibility for the poetry of being.
0267
Reposted by Giacomo Potente
Matt Johnson, PhD @mossmatters.bsky.social · 02/05/2025
The average American has three friends
Drawing of moss, liverwort, and hornwort, the three bryophyte friends.

Image from https://tentativeplantscientist.wordpress.com/wp-content/uploads/2013/04/moss-liverwort-hornwort.png
0222
Reposted by Giacomo Potente
Nature Portfolio @natureportfolio.nature.com · 30/04/2025
Researchers in the US are seeking career opportunities abroad as President Donald Trump’s administration slashes science funding and workforce numbers, finds an analysis of Nature’s jobs-board data. #Academicsky 🧪
go.nature.com
Exclusive: a Nature analysis signals the beginnings of a US science brain drain
A trawl of job views and application data suggests jobseekers are looking abroad as the Trump administration’s cuts to science take hold.
19137
Reposted by Giacomo Potente
Dr. Asmeret Asefaw Berhe @aaberhe.com · 25/04/2025
doi.org/10.1002/saj2... Most transformative scientific solutions often emerge from curiosity-driven research, not just problem-focused/use-inspired approaches. #Soil science's greatest contributions will come from maintaining intellectual freedom to truly understand 1 of Earth's most complex systems
0137
Reposted by Giacomo Potente
Nature Plants @natplants.nature.com · 22/04/2025
New OA Letter: "Viral delivery of an RNA-guided genome editor for transgene-free germline editing in Arabidopsis" rdcu.be/eiJVL ...engineered the tobacco rattle virus to express the RNA-guided TnpB enzyme ISYmu1 and guide RNA for transgene-free germline editing.
01413
Reposted by Giacomo Potente
Tanja Slotte @tanjaslotte.bsky.social · 18/04/2025
New preprint! We investigated the evolution of supergenes and mechanisms underlying distyly in Linum species that diverged ca 33 Mya. 1/8 bsky.app/profile/bior...
33516
Giacomo Potente @gpotente.bsky.social · 22/04/2025
Our @cp-cellreports.bsky.social paper was featured by the UZH Faculty of Science! We explore how sex chromosomes evolve during transitions to cosexuality, using the liverwort Marchantia quadrata 🧬 🔗 www.mnf.uzh.ch/de/news/arti...
mnf.uzh.ch
artikel
100
Reposted by Giacomo Potente
Masato Yamamichi @masatoyamamichi.bsky.social · 18/04/2025
Our first paper on algal experiments at NIG with @yawaguchi.bsky.social! We found that a single episode of sexual reproduction can produce large variation in population growth rates (and prevent extinction) under dual stressors @jevbio.bsky.social doi.org/10.1093/jeb/... bsky.app/profile/bior...
doi.org
A single episode of sexual reproduction can produce large variation in population growth rates under dual stressors
Abstract. Sexual reproduction has been a central topic in evolutionary biology because of its many costs: why have organisms evolved sexual reproduction de
1247
Reposted by Giacomo Potente
Rob Waterhouse @rmwaterhouse.bsky.social · 17/04/2025
Aye-ayes - amongst the lowest #genetic diversity of any primate measured to date - characterising genetic composition is key for future conservation efforts academic.oup.com/g3journal/ad... #biodiversity #genomics
academic.oup.com
A whole-genome scan for evidence of positive and balancing selection in aye-ayes (Daubentonia madagascariensis) utilizing a well-fit evolutionary baseline model
Abstract. The aye-aye (Daubentonia madagascariensis) is one of the 25 most endangered primate species in the world, maintaining amongst the lowest genetic
032
Reposted by Giacomo Potente
Dr. Hilary Rose Dawson @hilaryrosed.bsky.social · 09/04/2025
I submitted my successful postdoc applications this repo to demystify the #HiddenCurriculum and help others with their job searches. You can do the same! 🧪 #research #academia
04111
Reposted by Giacomo Potente
Kentaro K. Shimizu @kkshimizu1.bsky.social · 29/03/2025
A fundamental and groundbreaking study by Jordi Bascompte, a colleague from our department: The emergence of eukaryotes as an evolutionary algorithmic phase transition | PNAS www.pnas.org/doi/10.1073/...
pnas.org
The emergence of eukaryotes as an evolutionary algorithmic phase transition | PNAS
The origin of eukaryotes represents one of the most significant events in evolution since it allowed the posterior emergence of multicellular organ...
021
Reposted by Giacomo Potente
German Lagunas-Robles @g-lagunasrobles.bsky.social · 09/04/2025
Is supercoloniality a simple extension of polygyny?Supercolonies, networks of interconnected nests with many queens, have been proposed as a natural extension of multi-queen nests. In many Formica ants, a supergene determines whether a colony has a single queen or many queens. (1/n)
222
Reposted by Giacomo Potente
Nick Desnoyer @nickdesnoyer.bsky.social · 09/04/2025
I brought back the dire lotus from extinction by using CRISPR in Arabidopsis! Same Arabidopsis thaliana species, just four mutations..
27618
Reposted by Giacomo Potente
Tree of Sex @treeofsex.bsky.social · 21/03/2025
As work ramps up, we've created a Starter pack to follow members of the consortium. go.bsky.app/QjiXdsc Please comment below to be added!
82317