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University of Arizona EEB

@uofa-eeb.bsky.social
392 followers 32 following 4 posts

Official Bluesky account of the Department of Ecology & Evolutionary Biology at the University of Arizona eeb.arizona.edu

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Reposted by University of Arizona EEB
Joanna Masel @joannamasel.bsky.social · 12/12/2024
We identified protein domains in LUCA (Last Universal Common Ancestor). Their distinctive amino acid usage reveals the order amino acids were added to the genetic code, based mostly on size. Older proteins hint at earlier alternative codes. 1/15 @seekingluca.bsky.social www.pnas.org/doi/10.1073/...
pnas.org
Order of amino acid recruitment into the genetic code resolved by last universal common ancestor’s protein domains | PNAS
The current “consensus” order in which amino acids were added to the genetic code is based on potentially biased criteria, such as the absence of s...
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Reposted by University of Arizona EEB
University of Arizona EEB @uofa-eeb.bsky.social · 26/11/2024
We are excited to announce a tenure track faculty position on the genomics of resilience! Come join us in EEB here in Tucson! More details about the position at the link below. Application review begins on December 9! 🧪 arizona.csod.com/ux/ats/caree...
arizona.csod.com
Assistant Professor, Ecology and Evolutionary Biology
Establish and maintain a competitive research program.Teach at the graduate and undergraduate levels and contribute to mentoring students, including t...
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Reposted by University of Arizona EEB
Mike Barker @barkerms.bsky.social · 02/12/2024
🧪 Join us in Tucson! We will begin reviewing applications on December 9 for our tenure track faculty position on the genomics of resilience @uofa-eeb.bsky.social! Apply here: arizona.csod.com/ux/ats/caree...
A photo of a mountain road covered in snow with a rock wall on the right side and tall conifer trees on both side of the road. A bright orange sunset is in the background of the photo. Taken on Mt. Lemmon in the Santa Catalina Mountains above the city of Tucson, Arizona.
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Reposted by University of Arizona EEB
David Enard @denard.bsky.social · 28/11/2024
We found high levels of adaptive evolution in genes expressed in barrier tissue immune cells including 🫁, and/or expressed early during immune responses --> host adaptation likely works best when it cuts infections short early, before pathogens reach high numbers. www.nature.com/articles/s41...
nature.com
Adaptation in human immune cells residing in tissues at the frontline of infections - Nature Communications
Immune cells are under evolutionary pressure due to their anti-infective defence role. Here Salvador-Martínez and Murga-Moreno et al. combine population genetics approaches and Human Cell Atlas data, ...
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Reposted by University of Arizona EEB
University of Arizona EEB @uofa-eeb.bsky.social · 14/11/2024
If you are looking for a graduate program in Ecology & Evolutionary Biology, please considering joining us in Tucson, AZ! Our deadline is December 2 this year for admission to our Fall 2025 cohort. You can find out more about EEB and applying to our program here: eeb.arizona.edu/graduate/pro...
Saguaros and other Sonoran Desert plans stand in front of a purple and gray sky with a column of monsoon rain and rainbow in the distance.
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Reposted by University of Arizona EEB
Mike Barker @barkerms.bsky.social · 26/11/2024
Come join us in Tucson!! I am excited to announce a tenure track faculty position on the genomics of resilience @uofa-eeb.bsky.social! Read more about the position in the updated link below! We will begin reviewing applications on December 9! arizona.csod.com/ux/ats/caree...
A photo of the Sonoran Desert at night with a saguaro cactus in the foreground with the top glowing from the moonlight. A field of stars is visible in the sky behind the cactus.
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University of Arizona EEB @uofa-eeb.bsky.social · 26/11/2024
We are excited to announce a tenure track faculty position on the genomics of resilience! Come join us in EEB here in Tucson! More details about the position at the link below. Application review begins on December 9! 🧪 arizona.csod.com/ux/ats/caree...
arizona.csod.com
Assistant Professor, Ecology and Evolutionary Biology
Establish and maintain a competitive research program.Teach at the graduate and undergraduate levels and contribute to mentoring students, including t...
04041
Reposted by University of Arizona EEB
Brian J. Enquist @bjenquist.bsky.social · 19/11/2024
Hey, my department is now on Bluesky - check out one of the best - and the oldest - EEB departments around bsky.app/profile/uofa...
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Reposted by University of Arizona EEB
Yichao Zeng @yichaozeng.bsky.social · 20/11/2024
Symbionts, whether mutualistic or antagonistic, rely on their hosts for survival. In this paper with David Hembry, I show how the distinction between host and symbiont lifestyles could impact diversification through selection for & against phenotypic novelty. doi.org/10.1093/jeb/...
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Reposted by University of Arizona EEB
Jeff Good @jeffreygood.bsky.social · 18/11/2024
Outstanding opportunity here! Great department & city surrounded by the incredible Sonoran desert.
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Reposted by University of Arizona EEB
Chinmay Hemant Joshi @chjoshi.bsky.social · 19/11/2024
If you are looking to do a PhD in the beautiful Sonoran desert, please apply!!! We have an amazing EEB department with a great grad student community!!!
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University of Arizona EEB @uofa-eeb.bsky.social · 14/11/2024
If you are looking for a graduate program in Ecology & Evolutionary Biology, please considering joining us in Tucson, AZ! Our deadline is December 2 this year for admission to our Fall 2025 cohort. You can find out more about EEB and applying to our program here: eeb.arizona.edu/graduate/pro...
Saguaros and other Sonoran Desert plans stand in front of a purple and gray sky with a column of monsoon rain and rainbow in the distance.
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Reposted by University of Arizona EEB
University of Arizona EEB @uofa-eeb.bsky.social · 12/11/2024
The Department of Ecology & Evolutionary Biology at the University of Arizona is now on Bluesky! Follow us for posts about department events and news!
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Reposted by University of Arizona EEB
Botanical Society of America @botsocamerica.bsky.social · 23/07/2024
🌱 From the upcoming #AJB #Polyploidy special issue 🌱 Species-tree topology impacts the inference of ancient whole-genome duplications across the #angiosperm phylogeny By @pairoflogs.bsky.social, Geoffrey Finch & @barkerms.bsky.social bsapubs.onlinelibrary.wiley.com/doi/10.1002/... #evolution
A sampling of flowering plant species overlaid with an angiosperm phylogeny from Janssens et al. (2020) and WGD hypotheses made using Ks, synteny, and gene-tree to species-tree reconciliations.
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Reposted by University of Arizona EEB
Brian J. Enquist @bjenquist.bsky.social · 15/08/2024
We will stand a better chance of developing a more predictive science of the #Biosphere if we mix big and small-picture thinking. B Gallagher writing in the Nautilus provides an overview of our recent work in PNAS and makes the case for #ScientificTransculturalism 🧪🦋🦫🌎 nautil.us/the-case-for...
nautil.us
The Case for Scientific Transculturalism
Life will stand a better chance against climate change if we mix big- and small-picture thinking.
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Reposted by University of Arizona EEB
Brian J. Enquist @bjenquist.bsky.social · 28/08/2024
Check out our new paper .. some harsh reality for status of code and data sharing … “Code sharing in ecology and evolution increases citation rates but remains uncommon” onlinelibrary.wiley.com/doi/10.1002/... 🧪🌎🦫🦋
onlinelibrary.wiley.com
Code sharing in ecology and evolution increases citation rates but remains uncommon
Biologists increasingly rely on computer code to collect and analyze their data, reinforcing the importance of published code for transparency, reproducibility, training, and a basis for further work....
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Reposted by University of Arizona EEB
Amy McP @aemcp.bsky.social · 23/08/2024
So happy to see this out! Thanks to @barkerms.bsky.social, Yuannian Jiao, and Kelsey Glennon for leading this terrific effort--and thanks to all the authors and reviewers for their contributions!! #Polyploidy #AJB #SocietyJournal
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Reposted by University of Arizona EEB
Mike Barker @barkerms.bsky.social · 14/08/2024
Our new preprint on meiotic drive and genome evolution in vascular plants. This is a hypothesis/idea paper on how differences in meiotic drive in homosporous and heterosporous plants may explain broad differences in their genomes. Written with Sylvia Kinosian! ecoevorxiv.org/repository/v...
ecoevorxiv.org
Meiotic drive and genome evolution in vascular land plants
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Reposted by University of Arizona EEB
Brian J. Enquist @bjenquist.bsky.social · 18/09/2024
Check out our new paper - An allometry perspective on crops nph.onlinelibrary.wiley.com/doi/10.1111/... we review how an #allometry & #scaling perspective on crops gives insights into phenotypic evolution, hybrid vigor, domestication, crop yields & a novel theory for the #GreenRevolution 🧪🌎🌾🦋
nph.onlinelibrary.wiley.com
An allometry perspective on crops
Understanding trait–trait coordination is essential for successful plant breeding and crop modeling. Notably, plant size drives variation in morphological, physiological, and performance-related trai...
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Reposted by University of Arizona EEB
Brian J. Enquist @bjenquist.bsky.social · 18/10/2024
Another grand global mapping adventure - The global distribution and drivers of wood density and their impact on forest carbon stocks www.nature.com/articles/s41... 🧪
nature.com
The global distribution and drivers of wood density and their impact on forest carbon stocks - Nature Ecology & Evolution
Wood density is an important plant trait. Data from 1.1 million forest inventory plots and 10,703 tree species show a latitudinal gradient in wood density, with temperature and soil moisture explainin...
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Reposted by University of Arizona EEB
Brian J. Enquist @bjenquist.bsky.social · 09/05/2024
In our latest paper in PNAS, we ask: How can scientific progress be accelerated to meet the urgent challenges of the Anthropocene? We point to significant barriers in forecasting & prediction efforts for the biosphere 🧵👇 🧪🌎🦋 1/n www.pnas.org/doi/10.1073/... #ScienceTwitter #Ecology #Anthropocene
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Reposted by University of Arizona EEB
Brian J. Enquist @bjenquist.bsky.social · 22/05/2024
Using biodiversity data? 🌿 BIEN offers a modular workflow for cleaning, standardizing & integrating your data. Open, reproducible & ready for you! Explore biendata.org our BIEN API, & R packages. #BiodiversityScience #OpenData tnrs.biendata.org  gnrs.biendata.org  nsr.biendata.org
biendata.org
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Reposted by University of Arizona EEB
Mike Barker @barkerms.bsky.social · 19/10/2024
Cool new paper from my colleague @djli.bsky.social out today on nitrogen deposition and loss of diversity of nitrogen fixing plants! www.science.org/doi/10.1126/...
science.org
Long-term nitrogen deposition reduces the diversity of nitrogen-fixing plants
Anthropogenic nitrogen deposition reduces nitrogen-fixing plant diversity, but nitrogen-fixer losses are context dependent.
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Reposted by University of Arizona EEB
Anna Dornhaus @dornhaus.bsky.social · 13/11/2024
I am at ESA! I would love to talk to students interested in coming to lovely Arizona for work on collective behavior, ant or bee cognition, or similar topics! www.annadornhaus.net
annadornhaus.net
Dornhaus Lab
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Reposted by University of Arizona EEB
David Enard @denard.bsky.social · 12/10/2024
Wonder why bats host many zoonotic viruses? With @lucievirevolte.bsky.social and @psudmant.bsky.social labs and using 8 new Myotis assemblies, we find that DNA viruses drove most host bat adaptation, contrary to human adaptation dominated by RNA viruses. www.biorxiv.org/content/10.1...
biorxiv.org
Extensive longevity and DNA virus-driven adaptation in nearctic Myotis bats
The rich species diversity of bats encompasses extraordinary adaptations, including extreme longevity and tolerance to infectious disease. While traditional approaches using genetic screens in model o...
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Reposted by University of Arizona EEB
Ryan Gutenkunst @ryangutenkunst.bsky.social · 12/11/2024
The Genomic History Inference Strategies Tournament closes on Nov 15! Analyze genomic data with your favorite demographic inference tool, and see if you can discover the true demography of the population to win the contest (and authorship). More info at ghi.st! Please re-skeet.
GHIST logo
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Reposted by University of Arizona EEB
Joanna Masel @joannamasel.bsky.social · 06/09/2024
Our latest paper doi.org/10.7554/eLif... directly measures the "effective population size" that matters to nearly neutral / drift barrier theory, as the degree to which codon bias differs from expectations from GC content. Surprisingly, stronger natural selection -> more disordered proteins 1/
doi.org
The protein domains of vertebrate species in which selection is more effective have greater intrinsic structural disorder
Proteins evolve more intrinsic structural disorder under more effective selection, with selection assessed via a novel metric of codon adaptation.
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Reposted by University of Arizona EEB
Mike Barker @barkerms.bsky.social · 19/10/2024
For #FernFriday here's a short thread about a recent preprint from the lab. In this study led by Zheng Li with Sylvia Kinosian and Shing Zhan, we examined the hypotheses for the evolution of high chromosome numbers among homosporous ferns. We analyzed a broad collection of genomic data and 1/n
biorxiv.org
Ancient polyploidy and low rate of chromosome loss explain the high chromosome numbers of homosporous ferns
A longstanding question in plant evolution is why ferns have many more chromosomes than angiosperms. The leading hypothesis proposes that ferns have ancient polyploidy without chromosome loss or gene ...
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Reposted by University of Arizona EEB
Joanna Masel @joannamasel.bsky.social · 30/10/2024
Our new preprint changes the way we look at an “extinction vortex” in which a small population loses fitness, causing it to become even smaller. doi.org/10.1101/2024... @wmawass.bsky.social @uliseshmc.bsky.social 1/n
doi.org
Extinction vortices are driven more by a shortage of beneficial mutations than by deleterious mutation accumulation
Natural populations are increasingly at risk of extinction due to climate change and habitat loss and fragmentation. The long-term viability of small populations can be threatened by an extinction vor...
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Reposted by University of Arizona EEB
Mike Barker @barkerms.bsky.social · 02/11/2024
Happy to announce CAMBIUM, our new NSF NRT graduate training program on biodiversity informatics at the University of Arizona! Our website will be up shortly, but you can read about the program in the press release below! Please share with students who might be interested in being a CAMBIUM fellow!🧪
science.arizona.edu
University of Arizona receives NSF grant to launch innovative CAMBIUM Program in Biodiversity Informatics
With over one million species currently at risk of extinction due to climate change and human activity, the CAMBIUM NRT program will serve as a hub for educating students to work across disciplines, p...
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Reposted by University of Arizona EEB
Joanna Masel @joannamasel.bsky.social · 04/11/2024
I'm hiring a postdoc! To use substitution models to understand protein evolution and/or improve phylogenetic methods. evol.mcmaster.ca/brian/evoldi...
evol.mcmaster.ca
https://evol.mcmaster.ca/brian/evoldir/PostDocs//UArizona.AminoAcidSubstitutionModels
Postdoc position: amino acid substitution models A postdoc position is available with PI Joanna Masel (https://www.masellab.org/) at the University of Arizona in Tucson. Tucson is a vibrant city of n...
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Reposted by University of Arizona EEB
Brian J. Enquist @bjenquist.bsky.social · 12/11/2024
#macroecology
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Reposted by University of Arizona EEB
Brian J. Enquist @bjenquist.bsky.social · 12/11/2024
#Macroecology
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University of Arizona EEB @uofa-eeb.bsky.social · 12/11/2024
The Department of Ecology & Evolutionary Biology at the University of Arizona is now on Bluesky! Follow us for posts about department events and news!
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