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Masato Yamamichi

@masatoyamamichi.bsky.social
505 followers 390 following 28 posts

Associate Professor at the National Institute of Genetics / SOKENDAI / UTokyo sites.google.com/view/yamamichi-lab…

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Reposted by Masato Yamamichi
EcoEvoRxiv @ecoevorxiv.bsky.social · 29/09/2026
Quantifying the probability of evolutionary rescue doi.org/10.32942/X2T...
Conceptual challenges in determining the probability of evolutionary rescue. Panels a and b: Population size trajectories of replicate populations exposed to environmental change (red lines – with evolution: grey lines – without evolution). If the environment does not improve (i.e., the mean fitness of the non-evolving ancestral population, w¯0, remains below 1), all populations go extinct without evolution (panel a). By contrast, if the environment improves after some time, lifting w¯0 above 1, some populations may survive even without evolution (panel b). However, adaptive evolution increases the chance of survival, and more populations persist. Panel c: Fraction of populations extinct at time t with and without evolution over time. Following the first environmental change (blue triangle), all evolving and non-evolving populations persist initially but eventually all non-evolving populations inevitably go extinct, while some evolving populations survive the change. However, the environment does not stay constant indefinitely and at the next environmental change (yellow triangle), more of the evolving populations go extinct. The figure is purely illustrative and not based on an actual model.
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 20/09/2026
Join us for the next PopBio seminar on Thursday 24th September. Eloise Skinner (University of Queensland) will present "Pull one thread: how shifting ecosystems unravel into disease" Sign up link: forms.gle/6DkY5LDgdW7n...
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 19/08/2026
Join us for the next PopBio seminar on Thursday 27 August. Giulia Ghedini (Monash University) @giuliaghedini.bsky.social will present: "Linking species traits to community assembly and stability" Sign up link: forms.gle/e1RYP4bXk3Yw...
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Reposted by Masato Yamamichi
bioRxiv Ecology @biorxiv-ecology.bsky.social · 12/08/2026
Response diversity can stabilize or destabilize community dynamics depending on the number of insensitive species www.biorxiv.org/content/10.64898/20…
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Reposted by Masato Yamamichi
bioRxiv Ecology @biorxiv-ecology.bsky.social · 30/07/2026
Complexity-multistability relationships: How does species diversity shape the number of alternative stable states? www.biorxiv.org/content/10.64898/20…
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 23/07/2026
The next PopBio seminar will be on Thursday 30 July. Chang-Yu Chang (Academia Sinica) @changyuchang.bsky.social will present: "Unravelling the emergent properties of plant-microbe symbiosis and community assembly" Sign up link: forms.gle/v5kRZKAdauG7...
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Masato Yamamichi @masatoyamamichi.bsky.social · 13/07/2026
It was fun to attend the 3rd Conference of @smtpb.bsky.social (Society for Modeling & Theory in Population Biology) / @icerm.bsky.social Workshop "Modeling and Theory in Population Biology" @brown.edu (Providence, RI) in June! smtpb.org/Conferences icerm.brown.edu/program/topi...
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Masato Yamamichi @masatoyamamichi.bsky.social · 03/07/2026
A new paper led by @shotashibasaki.bsky.social was published in Theoretical Population Biology! "Applying invasion criterion to cultural evolution" doi.org/10.1016/j.tp...
doi.org
Redirecting
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 18/06/2026
The next PopBio seminar will be next Thursday June 25. Masayuki Ushio (HKUST) @ong8181.bsky.social will present: "Understanding cetacean ecology from water samples: Cetacean environmental DNA studies in Hong Kong waters" Sign up link: forms.gle/JR8NkjgBBgwD...
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Reposted by Masato Yamamichi
Evolution @journal-evo.bsky.social · 18/06/2026
Editor's Choice: "The double-edged effect of environmental fluctuations on evolutionary rescue" by Shibasaki & Yamamichi. doi.org/10.1093/evol... @masatoyamamichi.bsky.social
doi.org
The double-edged effect of environmental fluctuations on evolutionary rescue
Abstract. Recent studies revealed that contemporary evolution can prevent population extinction in deteriorating environments. Such evolutionary rescue has
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 22/05/2026
Join us for the next PopBio seminar this Thursday 28 May! Samay Pande (Indian Institute of Science) @iamsamayp.bsky.social will present a talk titled "Microbial predation as a driver of antibiotic resistance in natural communities" Sign up link: forms.gle/2x8kmq44fpZb...
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Masato Yamamichi @masatoyamamichi.bsky.social · 16/05/2026
A new review paper led by Kenta Suzuki was published in Biological Reviews: "Advances in causal discovery methods for ecological time series" doi.org/10.1002/brv....
doi.org
Advances in causal discovery methods for ecological time series
Recent advances in data collection technologies (e.g. automated sensor networks, satellite remote sensing, and high-throughput sequencing) have greatly expanded the availability of ecological time se...
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 23/04/2026
Will Godsoe (Lincoln University) @godsoewilliam.ecoevo.social.ap.brid.gy will present the next PopBio on the Dark Side seminar: "Is there more to life than information?" Join us online next Thursday 30th April 1pm AEST. Please share widely. Sign up link here: forms.gle/y2Dssbf268bJ...
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Masato Yamamichi @masatoyamamichi.bsky.social · 15/04/2026
We are happy to welcome Dr. Sou Tomimoto, Mr. Kaiyu Nakanishi, and Mr. You-Ting Hsieh as new members of our group at @nigidenken.bsky.social! sites.google.com/view/yamamic...
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Masato Yamamichi @masatoyamamichi.bsky.social · 13/04/2026
A new paper led by Hiro Toju was published in the ISME Journal @isme-microbes.bsky.social! "Microbiome assembly statistics toward ecosystem-scale insights, forecasting, and management" doi.org/10.1093/isme...
doi.org
Microbiome assembly statistics toward ecosystem-scale insights, forecasting, and management
Abstract. Microbiomes are increasingly recognized as key to addressing global challenges in health and sustainability, as they can provide emergent biologi
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 19/03/2026
Join us online Thursday 26th March. Mayumi Seto will present a seminar titled: A reaction-centric perspective on microbial community networks and ecosystem functions Please share widely. Sign up here: forms.gle/3QTsPyuEnE72...
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Masato Yamamichi @masatoyamamichi.bsky.social · 07/03/2026
Our second paper on algal experiments at @nigidenken.bsky.social with @shotashibasaki.bsky.social is finally out in @journal-evo.bsky.social! "The double-edged effect of environmental fluctuations on evolutionary rescue" doi.org/10.1093/evol... bsky.app/profile/bior...
doi.org
Validate User
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Masato Yamamichi @masatoyamamichi.bsky.social · 06/03/2026
A new paper in Biology Letters! "Higher genetic variance of prey defence promotes fluctuation-dependent species coexistence" @royalsocietypublishing.org doi.org/10.1098/rsbl...
doi.org
Higher genetic variance of prey defence promotes fluctuation-dependent species coexistence
Abstract. Understanding stable coexistence of competing species despite the competitive exclusion principle has been a central topic in ecology. Previous s
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Reposted by Masato Yamamichi
Royal Society Publishing @royalsocietypublishing.org · 05/03/2026
New research from #BiologyLetters: Higher genetic variance of prey defense promotes fluctuation-dependent species coexistence royalsocietypublishing.org/rsbl/article... | #Ecology #Evolution
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Masato Yamamichi @masatoyamamichi.bsky.social · 03/03/2026
We will have the following 8 presentations at the ESJ meeting in Kyoto next week! esj.ne.jp/meeting/abst... esj.ne.jp/meeting/abst... esj.ne.jp/meeting/abst... esj.ne.jp/meeting/abst... esj.ne.jp/meeting/abst... esj.ne.jp/meeting/abst... esj.ne.jp/meeting/abst... esj.ne.jp/meeting/abst...
esj.ne.jp
ESJ73 シンポジウム S14-4
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 19/02/2026
We are pleased to be back for another year! Join us next Thursday 1pm AEST. Deepa Agashe (NCBS) @deepaagashe.bsky.social will present a seminar titled: Founders, shapers: Colonizing individuals predict trait and population dynamics in new habitats Sign up form below ⬇️ ⬇️ ⬇️
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Reposted by Masato Yamamichi
EcoEvoRxiv @ecoevorxiv.bsky.social · 10/02/2026
'Modeling evolutionary rescue' doi.org/10.32942/X25...
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Masato Yamamichi @masatoyamamichi.bsky.social · 14/01/2026
A NIG-JOINT research meeting on population genetics will be held in March at @nigidenken.bsky.social "Population genetics in the era of population genomics" www.nig.ac.jp/nig/research...
nig.ac.jp
NIG Meetings::National Institute of Genetics
NIG is the research institute on genetics. Our mission is to provide infrastructure and opportunities for international collaboration, to train young scientists, and to build new frontiers of life sci...
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Masato Yamamichi @masatoyamamichi.bsky.social · 16/12/2025
At #BES2025 in Edinburgh, Takahisa Ueno will give a poster presentation entitled "Synthesizing modern coexistence theory (MCT) and biodiversity-ecosystem functional stability (BEFS)" on Tuesday! whova.com/embedded/ses...
whova.com
British Ecological Society Annual Meeting 2025 Agenda on Whova
December 15 – 18, 2025, Edinburgh, Scotland
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Masato Yamamichi @masatoyamamichi.bsky.social · 09/12/2025
We published a new paper in Ecology @ecologicalsociety.bsky.social entitled "Measuring competition coefficients in an ant community: Implications for intraspecific adaptation load" doi.org/10.1002/ecy....
doi.org
Measuring competition coefficients in an ant community: Implications for intraspecific adaptation load
Understanding the stable coexistence of species despite resource competition has been a central topic in ecology. Ant communities are particularly enigmatic as various species coexist despite resourc....
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Reposted by Masato Yamamichi
Sebastian Schreiber @sebastianschreiber.bsky.social · 19/11/2025
Join us for an @smtpb.bsky.social workshop on Modern Coexistence Theory. We'll cover mathematical foundations, the theory of partitioning, and data-based applications. Featuring @swatipatel.bsky.social, Nick Kortessis, & Lauren Shoemaker. Zoom link here: smtpb.org/event-6426026
Poster announcing the workshop.
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 24/11/2025
Join us this Thursday, Hiromi Uno (Tohoku University) will give our last seminar for the year: Insects, shrimps and fishes; river animal migrations and their ecological consequences Sign up to this google form to receive the zoom link and future seminar announcements forms.gle/H6YgMuAgDWYS...
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 18/11/2025
Our most recent seminar from Meghna Krishnadas is now available to watch 🌳🦠🌳 youtu.be/zzOS16wA9YU?...
youtu.be
Meghna Krishnadas - Demographic responses of plants to abiotic and biotic drivers
YouTube video by PopBio on the Dark Side
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Reposted by Masato Yamamichi
bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 14/11/2025
Applying invasion criterion to cultural evolution www.biorxiv.org/content/10.1101/202…
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 23/10/2025
Meghna Krishnadas will present the next PopBio seminar: The relative and interactive roles of abiotic and biotic drivers on demographic responses of plants Join us online, Thursday Oct 30 1pm AEST. Sign up to our mailing list to receive the zoom link: forms.gle/u7B1fyzRAwar...
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 22/09/2025
I-Ching Chen will present the next PopBio seminar: Revisiting the Vulnerability of Mountain Biota under Rapid Warming Join us online, Thursday Sep 25 1pm AEST. These seminars are open to all so please share widely. Sign up to our mailing list to receive the zoom link: forms.gle/kb6aHitUsL5f...
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Reposted by Masato Yamamichi
bioRxiv Ecology @biorxiv-ecology.bsky.social · 08/09/2025
Quantifying a trait-mediated indirect effect of an environmental stressor on population dynamics www.biorxiv.org/content/10.1101/202…
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Reposted by Masato Yamamichi
Trends in Ecology & Evolution @cp-trendsecolevo.bsky.social · 05/09/2025
Online now: The genomics of discrete polymorphisms maintained by disruptive selection
dlvr.it
The genomics of discrete polymorphisms maintained by disruptive selection
Disruptive selection can lead to the evolution of discrete morphs. We show that particular genetic architectures, in terms of dominance, epistasis, and linkage, are likely to evolve to produce discrete morphs under disruptive selection. Recent genomic studies have revealed that causative mutations tend to cluster, sometimes as a result of chromosomal rearrangements, but we still know little about the molecular mechanisms of dominance and epistasis. Although disruptive selection can also lead to speciation, once an optimal genetic architecture has evolved, disruptive selection no longer promotes the evolution of assortative mating. For a better understanding of the conditions that promote or constrain speciation, it is necessary to address how fast such a genetic architecture can evolve.
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Masato Yamamichi @masatoyamamichi.bsky.social · 05/09/2025
A new review paper is now online @cp-trendsecolevo.bsky.social "The genomics of discrete polymorphisms maintained by disruptive selection" doi.org/10.1016/j.tr...
doi.org
Redirecting
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 21/08/2025
Shaopeng Wang will present the next PopBio seminar: "Biodiversity and Ecosystem Stability Across Spatial and Temporal Scales" Join us online, Thursday August 28 1pm AEST. These seminars are open to all! Sign up to our mailing list to receive the zoom link: forms.gle/uRJwbK1ZacZH...
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 24/07/2025
Joe Wan will present the next PopBio seminar: "A unified theory of community structure" Join us online, Thursday July 31 1pm AEST. These seminars are open to all! Sign up to our mailing list to receive the zoom link: forms.gle/ZG8ghPoz2oX4...
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 14/07/2025
Save the dates! We have an excellent line up of speakers for the next three months (last Thursday of each month). These online seminars are open to all and the time of day is set for attendees in the Asia-Pacific. Sign up to this google form to receive announcements: forms.gle/2vn885K3uLC1...
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Reposted by Masato Yamamichi
岩波書店自然科学書編集部 @iwanami-ns.bsky.social · 30/06/2025
月刊誌『科学』2025年7月号 www.iwanami.co.jp/book/b101380... 【特集】競走と共存の生態学 どの生物も他の個体や多様な種との複雑な相互作用の中で生きている。だが,その中でどのように生物多様性が支えられているかについてはいまだ多くの謎が残されている。その解明を目指す研究を紹介する。 [特集目次] 群集生態学とは何だろうか……山道真人 多種共存と多様性崩壊のメカニズム──外来生物の競争が示す統一的原理……鶴井香織 ダーウィンの置き土産──多様な生物はいかにして共存しているのか?……舞木昭彦 草花と昆虫が織りなすネットワーク……篠原直登
iwanami.co.jp
科学 2025年7月号|岩波書店
【特集】競争と共存の生態学
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 20/06/2025
Andrew Barnes @barnesecodiv.bsky.social will present our next seminar: "Deciphering the Multitrophic Consequences of Biodiversity Change Through an Energetic Lens" Join us online Thursday 26th June 1pm AEST! Sign up to our mailing list to receive the zoom link forms.gle/24Y557Cjeu6w...
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 27/05/2025
Join us online this Thursday 1pm AEST. Hye Jin Park @hyejinpark.bsky.social (Inha University) will present: "Artificial selection for collective composition" Sign up to receive the zoom link forms.gle/53hkcdcKPGfa... NB. This seminar won't be recorded.
An image advertising the seminar as described in the main text but with the following abstract: Microbial communities can perform complex functions that individual microbes cannot achieve alone, but enhancing these collective functions through artificial selection is challenging. Here, we examine a simple microbial system to develop a theoretical framework for understanding the conditions necessary for successful artificial selection on collectives. By analyzing whether artificial selection can effectively drive the community toward a target composition, we predict its likelihood of success under different experimental setups and identify the key parameters that influence successful selection.
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Journal of Evolutionary Biology @jevbio.bsky.social · 26/05/2025
Experiments of a green alga, Closterium psl. complex, show that a single episode of sexual reproduction produces large variation in population growth rates under dual stressors, promoting evolutionary rescue: doi.org/10.1093/jeb/... @yawaguchi.bsky.social and @masatoyamamichi.bsky.social
doi.org
A single episode of sexual reproduction can produce large variation in population growth rates under dual stressors
Abstract. Sexual reproduction has been a central topic in evolutionary biology because of its many costs: why have organisms evolved sexual reproduction de
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Masato Yamamichi @masatoyamamichi.bsky.social · 09/05/2025
A paper with Miguel Gómez-Llano and @adamsiepielski.bsky.social entitled "Sexual conflict in resident species can facilitate establishment of a maladapted invader" was published in Am. Nat. @asn-amnat.bsky.social! doi.org/10.1086/736568
doi.org
Sexual conflict in resident species can facilitate establishment of a maladapted invader | The American Naturalist: Vol 0, No ja
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 25/04/2025
We have a YouTube channel! You can see recordings of Akshit Goyal's talk from yesterday and Ryan Chisholm's talk from last month here: www.youtube.com/@PopBio-onth...
youtube.com
PopBio on the Dark Side
This is the channel of the seminar series PopBio on the Dark Side. A virtual seminar series covering research on population biology and theoretical ecology from academics in the Asia-Pacific region. W...
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Reposted by Masato Yamamichi
PopBio on the Dark Side @pop-bio.bsky.social · 21/04/2025
Join us online for our second seminar this Thursday 1pm AEST. Akshit Goyal @akshitg.bsky.social (ICTS) will present: "Predicting Ecosystem Responses to Perturbations via a Geometric Approach" Sign up to receive the zoom link forms.gle/XzypgbUp53fW... NB. Time changes in SE Aus from last month!
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Yawako @yawaguchi.bsky.social · 18/04/2025
Our new study is out! Just one episode of sexual reproduction in Closterium🌙 can create offspring with very different stress reactions compared to the parents. This might be because of massive copy number variations in their genomes, which produce a wide range of phenotypes.
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Masato Yamamichi @masatoyamamichi.bsky.social · 18/04/2025
Our first paper on algal experiments at NIG with @yawaguchi.bsky.social! We found that a single episode of sexual reproduction can produce large variation in population growth rates (and prevent extinction) under dual stressors @jevbio.bsky.social doi.org/10.1093/jeb/... bsky.app/profile/bior...
doi.org
A single episode of sexual reproduction can produce large variation in population growth rates under dual stressors
Abstract. Sexual reproduction has been a central topic in evolutionary biology because of its many costs: why have organisms evolved sexual reproduction de
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Masato Yamamichi @masatoyamamichi.bsky.social · 02/04/2025
We are happy to welcome Dr. Takahisa Ueno and Dr. Shohei Kawata as new postdocs of our group at NIG! sites.google.com/view/yamamic...
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Masato Yamamichi @masatoyamamichi.bsky.social · 31/03/2025
Interested in doing a postdoc at the National Institute of Genetics in Japan focusing on theoretical ecology and evolutionary biology? Consider applying for the NIG postdoc fellowship! www.nig.ac.jp/nig/career-d...
nig.ac.jp
Application Guidelines for NIG Postdoctoral Fellows 2026::National Institute of Genetics
NIG is the research institute on genetics. Our mission is to provide infrastructure and opportunities for international collaboration, to train young scientists, and to build new frontiers of life sci...
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PopBio on the Dark Side @pop-bio.bsky.social · 24/03/2025
Join us for our first seminar on Friday: Ryan Chisholm will present: A unified theory of niche assembly and dispersal assembly in community ecology Sign up here to receive the zoom link forms.gle/WSnJS3bNK1b4mxE59 For those in Australia note that 1pm AEST will be 2pm in Melbourne.
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Masato Yamamichi @masatoyamamichi.bsky.social · 21/03/2025
Our paper is among the top 10 most-cited papers published by @populationecology.bsky.social in 2023! @EvolOdonata.ecoevo.social.ap.brid.gy doi.org/10.1002/1438... #TopCitedArticle
doi.org
Frequency‐dependent community dynamics driven by sexual interactions
Research in community ecology has tended to focus on trophic interactions as driving forces of community dynamics, and sexual interactions have often been overlooked. Here we explore how sexual inter...
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