Reposted by Marek Glombik
1/ Excited to share the newest tool in the pangenome MUMiverse: Shredtools!
Shredtools enables a user to navigate the pangenome coordinate system with multi-MUMs. More in the thread🧵
Code: github.com/vikshiv/shredtools
Interactive tool for querying HPRC assemblies: vikshiv.github.io/shredtools
biorxiv.org
Navigating the pangenome coordinate system with Shredtools
Existing notions of pangenome coordinates rely on hard-to-compute multiple sequence alignments. On the other hand, pangenome-wide exact unique matches (multi-MUMs) can be computed efficiently, and rep...