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James Davies

@james-s-davies.bsky.social
82 followers 95 following 10 posts

Researcher interested in how molecules traverse membranes. 🥝

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Reposted by James Davies
James Murphy @pseudokinase.bsky.social · 28/08/2026
Wonderful to share our new study! science.org/doi/10.1126/sc… Patients can look well-controlled and still have epithelial death programs running. We found it in nascent IBD lesions on advanced therapy and it flagged who relapsed over 2–3 years. @WEHI_research @NHMRC #ScienceResearch
science.org
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Lukas @lukasfeilen.bsky.social · 12/08/2026
Our paper on the human endosomal Na⁺/H⁺ exchanger NHE6 (SLC9A6) is out in @natcomms.nature.com! We determined its cryo-EM structure at 3.4 Å, show a kinetic preference for K⁺ over Na⁺, and describe a lipid-associated gate and an intrinsically disordered C-terminus. www.nature.com/articles/s41...
nature.com
Integrative structural analysis of human endosomal NHE6 reveals a lipid-associated gate and disordered C-terminus - Nature Communications
The endosomal Na+ /H+ exchanger HsNHE6 regulates organellar pH and is implicated in neurological disease. Here the authors determine its cryo-EM structure and show a kinetic preference for K+ over Na+...
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Reposted by James Davies
Nature Structural & Molecular Biology @natsmb.nature.com · 08/04/2026
New online: A two-step mechanism for sugar translocation
dlvr.it
A two-step mechanism for sugar translocation
Nature Structural & Molecular Biology, Published online: 08 April 2026; doi:10.1038/s41594-026-01784-wSugar porters are textbook examples of how transport activity is described by Michaelis–Menten kinetics. Here, using saturation transfer difference nuclear magnetic resonance spectroscopy, Ahn et al. conclude that the fully occluded state of a sugar transporter is analogous to the transition state in soluble enzymes.
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Reposted by James Davies
Kedrov Lab @ HHU @kedrov-lab.bsky.social · 29/03/2026
What a fascinating story is hiding in bioRxiv!! An elaborate work of @doylemt1.bsky.social an co-workers to understand the function of the bacterial TAM machinery ❤️‍🔥 and here it is, a rich body of evidence for the "ancient" bridge for the lipid transfer 👇 www.biorxiv.org/content/10.6...
biorxiv.org
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Alejandro Montenegro @aemonten.bsky.social · 26/02/2026
"Nobody will care about your work about sugar metabolism and transporters in Neurospora crassa" Nobody can predict what can happen with your work. www.sciencedirect.com/science/arti...
sciencedirect.com
Fungal-derived cellobiose metabolic pathway fuels T cells to bypass intratumoral glucose competition
Solid tumors harbor immunosuppressive microenvironments that inhibit tumor-infiltrating lymphocytes (TILs) through the voracious consumption of glucos…
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Emmanuele Severi @emmseveri.bsky.social · 23/02/2026
#microsky Transporters matter and they’re always fun to work with www.science.org/doi/10.1126/...
science.org
CH•••S hydrogen bonds drive molecular recognition of ergothioneine by the microbial transporter
Alkyl CH•••S hydrogen bonding interactions enable selective transport of the antioxidant ergothioneine into bacterial cells.
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Reposted by James Davies
James Lingford @jameslingford.bsky.social · 19/02/2026
Our work is published today: ‘Oxygen metabolism in descendants of the archaeal-eukaryotic ancestor’. This was a huge effort lead by @katyappler.bsky.social. Extremely grateful to have been a part of this amazing project! 😊🦠🧬 Links: www.nature.com/articles/s41... www.nature.com/articles/s41...
Eukaryogenesis in light of an expanded catalogue of Asgard genomes. a, Simplified, scaled timeline spanning from before the Last Asgard archaea Common Ancestor (LAsCA) to today. Thin bands mark predicted time ranges  of relevant events (for example, GOE), thicker bands represent processes  (for example, eukaryogenesis), and brackets indicate the period shown in b. The timeline further highlights milestones, including potential early eukaryotic fossils60 and the modern-day co-occurrence of Heimdallarchaeia and Alphaproteobacteria observed in this study (interaction likely originated earlier). Fig. 1 | Expanded genomic diversity of Asgard archaea. a, Maximum-likelihood phylogeny based on 47 non-ribosomal markers (NM47)using the WAG + C10 + R4 model with 100 nonparametric bootstrap pseudoreplicates, including 869 Asgardarchaeota MAGs and 309 outgroup genomes. The blue branches (lower right) indicate the new Asgardarchaeota classes, Ranarchaeia, and the recently proposed Asgardarchaeia4. The concentric rings denote (in to out): the predicted genome size, metabolic guilds based on Pfam clustering, sampling locations, and black stars on the outside mark MAGs added by this study. Asgard, Asgardarchaeia; Atabey, Atabeyarchaeia; Baldr, Baldrarchaeia; Frey/Jord,  Frey/Jordarchaeia; Gerd, Gerdarchaeales; Heimdall, Heimdallarchaeaceae;  Hel, Helarchaeales; Hermod, Hermodarchaeia; Hod, Hodarchaeales;  Kari, Kariarchaeaceae; Loki, Lokiarchaeales; Njord, Njordarchaeales;  Odin, Odinarchaeia; Ran, Ranarchaeia; Sif, Sifarchaeia; Thor, Thorarchaeia;  Wukong, Wukongarchaeia. b, SR4-recoded phylogeny of the same genome  set inferred with the model GTR + C60 + G and 100 nonparametric bootstrap pseudoreplicates (Methods). This updated catalogue constitutes a large increase in the medium- to high-quality publicly available genomes (completeness >50% and contamination and redundancy <10%) with 65.3% from the Guaymas Basin and 34.7% from the Bohai Sea. The encircled numbers represent MAGS added by this study. The scale bars in bothsubpanels represent the average number of substitutions per site.Map created in BioRender; Appler, K. https://biorender.com/147ieoc(2025).
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Charles Bayly-Jones @charlesbj.bsky.social · 18/02/2026
I’ve officially started my lab at Monash University! 🎉 We’re diving into #cellgrowth and #lysosome biology, through the lens of molecular #structure and mechanism. I’m thrilled to say that PhD student scholarships are available—so please share widely and get in touch if you’re interested. 🤩
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James Davies @james-s-davies.bsky.social · 10/02/2026
A tour de force!
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Reposted by James Davies
Lorraine Reese @lorraine-reese.bsky.social · 06/02/2026
Internationally renowned as one of the leaders in neurotransmitter transport research, don't miss Professor Renae Ryan (@renaeryan.bsky.social) present her #BiochemSoc International Award Lecture at Membrane #Proteins Conference 2026! 🧪
The Biochemical Society 2025 Awards. International Award, Professor Renae Ryan, University of Sydney. Includes photo of Prof Ryan and Biochemical Society awards logo.
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Reposted by James Davies
corrylab.bsky.social @corrylab.bsky.social · 02/02/2026
Beginning 2026 with a flipping good paper🚀 OSCA/TMEM63 proteins do double duty: they’re ion channels and mechanically activated lipid scramblases helping reshape membranes and survive mechanical stress. 👏 @yiechanglin.bsky.social @charlesdcox.bsky.social doi.org/10.1038/s414...
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Lorne Proteins @lorneproteins.bsky.social · 02/02/2026
Countdown to Lorne Proteins 🏖️ Session 6: Invited speakers Nieng Yan, Tsinghua University, on the structural pharmacology of Voltage-gated sodium channels; closing with Simon Newstead, University of Oxford, on plasma membrane polyamine transporters in chronic pain. 🔗 www.lorneproteins.org
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Reposted by James Davies
Matt Doyle @doylemt1.bsky.social · 13/01/2026
💊 We are excited to share our preprint that describes an inhibitor of the widespread and highly conserved Two-Partner Secretion (TPS) system that is critical for Gram-negative pathogens to export a multitude of diverse virulence factors. (1/6) www.biorxiv.org/content/10.6...
biorxiv.org
First inhibitor of a bacterial two-partner secretion system.
Two-partner secretion system transporter proteins (TpsB) are widely conserved across Gram-negative pathogens. TpsB family proteins secrete exoprotein virulence factors that perform a myriad of functions such as adhesion and immune modulation. Despite their incredible importance in bacterial infectious disease, TpsB inhibitors have not yet been discovered. Here, we describe a potent inhibitor of FhaC, a TpsB protein produced by Bordetella spp . FhaC secretes the exoprotein FhaB that is essential for the establishment of whooping cough. We designed a peptide called P1 that we predicted would prevent substrate binding and lock FhaC in a secretion-inactive state. Simulations and biochemical assays supported our hypothesis and identified interactions important for P1 binding to FhaC. Strikingly, we observed that the peptide strongly inhibited FhaB secretion from clinical isolates and broadly reduced correlates of virulence. Together, this work provides a strong case for further development of a novel class of anti-TpsB anti-virulence compounds. ### Competing Interest Statement The authors have declared no competing interest. National Institute of Allergy and Infectious Diseases, R21AI180112
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James Davies @james-s-davies.bsky.social · 08/01/2026
Our paper on the human carnitine transporter OCTN2 (SLC22A5) is out in @natcomms.nature.com! We solved structures of OCTN2 in multiple states and explored how carnitine transport is Na⁺-dependent, providing a framework for understanding SPCD disease causing variants and drug interactions.
rdcu.be
Structural basis of sodium ion-dependent carnitine transport by OCTN2
Nature Communications - Carnitine uptake by OCTN2 supports fatty acid metabolism. Here, authors report cryo-EM structures of human OCTN2, revealing the mechanism of sodium ion-dependent carnitine...
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Chris Mulligan @chrismulligan.bsky.social · 17/12/2025
🚨My lab is hiring a postdoc!🚨 If you’re interested in working out the mechanism and physiological impact of bacterial lipid transport processes then please apply! Job advert is here: tinyurl.com/4swddfda Get in touch by email (c.mulligan@kent.ac.uk) for informal enquiries Please repost! Thanks!
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Christopher McDevitt @camcdevitt.bsky.social · 11/12/2025
Thrilled to announce a new @natcomms.nature.com paper led by Alastair Stewart and team @victorchang.edu.au with contributions from @mcdevittlab.bsky.social Using #cryoEM we discovered unique features of the #Pseudomonas aeruginosa ATP synthase including an unexpected role for #zinc in the complex 🦠🔬
doi.org
Distinct structural features of Pseudomonas aeruginosa ATP synthase revealed by cryo-electron microscopy - Nature Communications
ATP synthase powers cells by converting proton translocation into energy. Here, authors reveal distinct structural features of the P. aeruginosa ATP synthase that regulate activity and may serve as ta...
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James Davies @james-s-davies.bsky.social · 09/11/2025
Check out our new paper: 🔗 www.cell.com/structure/fu... We explored how sulfate-reducing bacteria import isethionate, a sulfur-containing molecule found in the environment and produced by microbes in the human gut. We captured a structure of the IseQM TRAP transporter in a substrate-bound state.
cell.com
Structural basis of isethionate transport by a TRAP transporter from a sulfate-reducing bacterium
Newton-Vesty et al. used a megabody fiducial to determine the cryo-EM structure of an isethionate TRAP transporter, revealing the substrate and Na+-binding sites. Transport is dependent on Na+ and the...
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Reposted by James Davies
Emmanuele Severi @emmseveri.bsky.social · 06/11/2025
#microsky finally a TRAP transporter that is *not* the Neu5Ac-transporting SiaPQM ;-) www.cell.com/structure/fu...
cell.com
Structural basis of isethionate transport by a TRAP transporter from a sulfate-reducing bacterium
Newton-Vesty et al. used a megabody fiducial to determine the cryo-EM structure of an isethionate TRAP transporter, revealing the substrate and Na+-binding sites. Transport is dependent on Na+ and the...
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