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Dan Bose

@danbose.bsky.social
1.4K followers 1.1K following 140 posts

scientist (enhancers, eRNAs, IDRs and chromatin), Group Leader; bike-fettling, bird-watching, sword dancing, accordion-botherer www.bose-lab.org @danbose@biologists.social

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Reposted by Dan Bose
bioRxiv Biophysics @biorxiv-biophys.bsky.social · 29/09/2026
De novo design of flexible protein interactions with GuideFlip www.biorxiv.org/content/10.64898/20…
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Reposted by Dan Bose
Tessa Montague @tessamontague.bsky.social · 29/09/2026
I'm excited to share our new preprint: Generation of a transgenic cephalopod tinyurl.com/pc86jxz8 Cephalopods (cuttlefish, octopus & squid) are crazy critters that dynamically camouflage to their surroundings by changing the color, pattern, & texture of their skin, which they control w their brain.
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Reposted by Dan Bose
bioRxiv Biophysics @biorxiv-biophys.bsky.social · 22/09/2026
FRET-guided integrative modeling resolves Mg2+-dependent RNA tertiary-contact formation www.biorxiv.org/content/10.64898/20…
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Reposted by Dan Bose
bioRxiv Molecular Biology @biorxiv-molbio.bsky.social · 15/09/2026
Enhancer Tuning by Sequence-Specific Repressors www.biorxiv.org/content/10.64898/20…
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Dan Bose @danbose.bsky.social · 14/09/2026
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Dan Bose @danbose.bsky.social · 11/09/2026
One of my favourite meetings! Great science and fantastic community- you should register before it's too late!
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Dan Bose @danbose.bsky.social · 11/09/2026
Fantastic #postdoc opportunity with @a-radzisheuskaya.bsky.social !
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Dan Bose @danbose.bsky.social · 11/09/2026
Nice 🧵 describing super study on #eRNA regulation of gene expression- really nice work and highlights the complexity of enhancer activity
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Reposted by Dan Bose
Di Jiang @dijiang319.bsky.social · 10/09/2026
Online today @science.org Noncoding transcription controls the developmental dynamics of long-range gene regulation | Science www.science.org/doi/10.1126/...
science.org
Noncoding transcription controls the developmental dynamics of long-range gene regulation
The genomic regions regulating gene expression are often themselves transcribed into a variety of noncoding RNAs (ncRNAs). However, the regulatory roles of this noncoding transcription remain largely ...
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Reposted by Dan Bose
Jamie Blaza @jnb-lab.bsky.social · 10/08/2026
Permanent academic position as a Lecturer in cryo-ET open at York. We are looking for someone to lead a research program making the most of the stunning advances occurring in cryo-ET. It's a research and teaching post but with a focus on research in the early years. jobs.york.ac.uk/vacancy/lect...
jobs.york.ac.uk
Jobs - The University of York
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Dan Bose @danbose.bsky.social · 05/08/2026
Fantastic to finally see this out. It's already been incredibly useful for us and I'm sure will continue to be in the future!
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Reposted by Dan Bose
Stephen Curry @scurry.bsky.social · 23/07/2026
The Diamond Light Source is one of the UK's most productive scientific faclities. Just signed an open letter urging the STFC to ensure decisions about its future are "transparent, evidence-led, and made in meaningful consultation with its […] user communities." openletter.earth/open-letter-...
openletter.earth
Open Letter in Response to Funding Pressures Affecting Diamond Light Source
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Dan Bose @danbose.bsky.social · 23/07/2026
Very cool story, and potentially more nice evidence for link between #RNA transcript length and #condensate-depend #transcription regulation from CREs
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Dan Bose @danbose.bsky.social · 21/07/2026
Super work from @dozenoaks.bsky.social lab to help standardise #smFRET studies between in vitro and in cell models. 📏🔬🎇
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Reposted by Dan Bose
Paperpile @paperpile.com · 21/07/2026
We built a free tool to check your bibliography before you submit your manuscript for publication. Along the way, we ran experiments to understand what actually causes AI to hallucinate citations, and which references are most at risk.
paperpile.com
A new tool to fight hallucinations in preprints - Paperpile
A blog about scientific publishing and academic productivity
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Reposted by Dan Bose
Cell Biology J-Club @cellclub.bsky.social · 21/07/2026
A Universal Protein Ladder for Standardization of Diverse FRET Assays - Smith - Advanced Science - Wiley Online Library advanced.onlinelibrary.wiley.com/doi/10.1002/...
advanced.onlinelibrary.wiley.com
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Dan Bose @danbose.bsky.social · 17/07/2026
Ah, what a great resource!
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Dan Bose @danbose.bsky.social · 07/07/2026
For all you #Neuro people out there, there's still time to sign up for #NeuroBioUK! One of the friendliest and best value meetings happening anywhere. It's a must for anyone interested in the fundamentals of how #neurons work. 🧠
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Reposted by Dan Bose
Anders Sejr Hansen @andersshansen.bsky.social · 29/06/2026
Very interesting new preprint from @jengreitz.bsky.social lab arguing that rather than there being significant enhancer-promoter compatibility, promoters simply differ in their enhancer responsiveness. If promoters are responsive, they respond to all enhancers. www.biorxiv.org/content/10.6...
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Dan Bose @danbose.bsky.social · 26/06/2026
Really elegant work showing the importance of transient enhancer/promoter contacts. Also highlights why sometimes, building a tightly controlled model system in cells gives us the best way to get a clear answer to a complex question
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Reposted by Dan Bose
Anders Sejr Hansen @andersshansen.bsky.social · 22/06/2026
(1/n) Very excited to share tri-lab collab (Mirny & Zechner) led by Harvey, Henrik & Jack: Q: How do enhancers & promoters interact in space (contact vs. action-at-a-distance) and time (stable vs. transient)? A: Transient E-P contact (~25-42 nm lasting ~10-20 sec): www.biorxiv.org/content/10.6...
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Dan Bose @danbose.bsky.social · 18/06/2026
Fun to see star grad student Owen Godwin present at today's single molecule SM@SH meeting!! Take homes: if you want to get nice streptavidin grids for enriching RNA on your grids, get your talc from Waitrose! @sheffielduni.bsky.social #cryoEM #eRNA
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Dan Bose @danbose.bsky.social · 17/06/2026
Here's a really exciting #phd opportunity to work with us on non-coding #RNAs in Bladder Cancer as part of a collaboration with Dr Jon Griffin and @iansudbery.bsky.social -check it out! tinyurl.com/4rp9abxr
tinyurl.com
Developing a non-coding RNA predictive biomarker in bladder cancer at University of Sheffield on FindAPhD.com
PhD Project - Developing a non-coding RNA predictive biomarker in bladder cancer at University of Sheffield, listed on FindAPhD.com
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Reposted by Dan Bose
Ali Twelvetrees @dozenoaks.bsky.social · 16/06/2026
Our latest review is out. We take a deep dive into the human mutations in microtubule motors that drive devastating neurodevelopmental and neurodegenerative diseases. Taking in motor protein biophysics, animal models of disease as well as patient phenotypes. onlinelibrary.wiley.com/doi/full/10....
Graphical abstract summarising the impact of defective microtubule motors on axonal transport. Kinesins (green) and dyneins (magenta) maintain balance along the length of the axon. When disease causing mutations cause either hyper or hypo activity, the loss of balance results in axon dieback.
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Dan Bose @danbose.bsky.social · 12/06/2026
Congrats! This is very cool!
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Dan Bose @danbose.bsky.social · 03/06/2026
Lots of coffee being drunk and vendor goodies being snapped up ahead of today's @mcb-sheffield.bsky.social research day- excited to hear about all our exciting projects! 🧫🧬🐁🔬
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Reposted by Dan Bose
Alessandro Costa @costalaboratory.bsky.social · 28/05/2026
New preprint from our lab! We've been working out how the CMG replicative helicase gets built. 🧵 1/3
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Dan Bose @danbose.bsky.social · 28/05/2026
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Reposted by Dan Bose
Ali Twelvetrees @dozenoaks.bsky.social · 20/05/2026
Guess what neurobiology fans?!? Registration is open!! More info on the website neurobiouk.sites.sheffield.ac.uk/registration #neurobiology #neurobiouk #neuronalcellbiology #molecularneurobiology #cellularneuroscience #neuroscience
neurobiouk.sites.sheffield.ac.uk
NeuroBioUK - Registration
Step 1: Register through our event page. All attendees should register to attend through our event page. Early bird registration deadline is the 17th of July (£35) and late registration deadline is th...
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Dan Bose @danbose.bsky.social · 20/05/2026
Really enjoyed this review on co-translational folding
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Dan Bose @danbose.bsky.social · 14/05/2026
Really excited to meet @kellythd-nguyen.bsky.social in @sheffielduni.bsky.social today for the SM&SH #singlemolecules seminar.
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Reposted by Dan Bose
Elphege Nora Lab at UCSF @elphegenoralab.bsky.social · 13/05/2026
Why can't we explain enhancer action despite 2 decades of chromosome conformation technologies? 😬 Our new study spearheaded by Leonid Mirny's group points to a flaw in our assumptions, and to a solution from physical principles By @timothyfoldes.bsky.social 💻& @karissalhansen.bsky.social 🧪 🧵👇
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Dan Bose @danbose.bsky.social · 05/05/2026
Nice structural work highlighting mechanisms of #RNA binding in the absence of sequence or structural conservation.
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Reposted by Dan Bose
Keri Backus @keribackus.bsky.social · 03/05/2026
Super excited to launch POCAxOMAP with @dschweppe.bsky.social and @oligopain.bsky.social and led by Eli Biletch, Conor Herlihy and Lidan Li. If you’ve ever wanted to do proximity labeling on DNA, RNA, or protein without genetic engineering, look no further. www.biorxiv.org/content/10.6...
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Dan Bose @danbose.bsky.social · 01/05/2026
#IDRs play critical roles shaping how #CBP and #p300 regulate #transcription and #chromatin. Despite many years of study, new behaviours continue to emerge. In her new Review, grad student Grace Gilbert takes a look at where the field is 👀: tinyurl.com/cbpidrs @biochemsoc.bsky.social
tinyurl.com
How intrinsically disordered regions shape the function of CREB-binding protein
Abstract. CREB-binding protein (CBP) is a histone acetyltransferase and transcriptional co-activator that operates across the genome at cis-regulatory elements (CREs) to regulate gene expression. Comp...
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Reposted by Dan Bose
Lovorka Stojić @loverna.bsky.social · 25/04/2026
Only few days left to submit an abstract for our second annual QMUL centre for epigenetics meeting in June in London! Deadline 3rd may! Details below
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Dan Bose @danbose.bsky.social · 23/04/2026
We've thought really hard about using #NMR to look at #RNA dynamics at our RNA-binding interfaces but always figured it was too hard for our system. Really exciting to see the possibility moving a step closer! Super work, congratulations!! #RBPs #IDRs #RNAstructure
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Reposted by Dan Bose
bioRxiv Molecular Biology @biorxiv-molbio.bsky.social · 17/04/2026
Distribution and p300/CBP dependency of cis-regulatory elements are encoded by unique combinations of histone lactylation and acetylation www.biorxiv.org/content/10.64898/20…
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Reposted by Dan Bose
Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 14/04/2026
Run an MD simulation of any protein in the AlphaFold Protein Structure Database using AF-CALVADOS Thanks to @sobuelow.bsky.social AF-CALVADOS is now on Colab colab.research.google.com/github/KULL-...
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Reposted by Dan Bose
Janet Kumita @jrkumita.bsky.social · 07/04/2026
Join us THIS Friday (10th April, 1 pm BST) for our UK Biomolecular Condensate seminar!! 👇👇
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Dan Bose @danbose.bsky.social · 02/04/2026
Beautiful work showing the power of #smFRET for uncovering the complexities ensembles in biology, this time for #RNA structures during transcription- congratulations @olivierduss.bsky.social !!
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Reposted by Dan Bose
Olivier Duss @olivierduss.bsky.social · 25/03/2026
My first PhD student‘s, Kavan Gor, paper on 5-color single-molecule imaging of co-transcriptional RNA folding is out in @science.org Advances! He finds how RNA modification enzymes, antisense oligonucleotides and ribosomal proteins re-route nascent RNA folding. See more details in EMBL post below!
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Reposted by Dan Bose
tslab.bsky.social @tslab.bsky.social · 19/03/2026
Our TDP-43-paraspeckle paper is now published in Nature Cell Biology! 🎉 www.nature.com/articles/s41... A Nature Research Briefing on this study will follow shortly. Congratulations to joint first authors Rachel, Cara and Ruaridh👍 #paraspeckle #condensates #TDP-43 #ALS
nature.com
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Reposted by Dan Bose
Janet Kumita @jrkumita.bsky.social · 30/03/2026
Come join us for the next monthly on-line seminar (10th April, 1 pm BST) aimed to connect the UK Biomolecular Condensate community (all are welcome to come and listen). Kellie Dean and Naoto Hori are presenting! @physicsoflifeuk.bsky.social
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Dan Bose @danbose.bsky.social · 30/03/2026
Fantastic work from our @sheffielduni.bsky.social friends @tslab.bsky.social !! Great to see this super story finally out!
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Reposted by Dan Bose
Olivier Duss @olivierduss.bsky.social · 29/03/2026
Paraspeckle condensation is controlled via TDP-43 polymerization and linked to neuroprotection! www.nature.com/articles/s41... Excellent work from Tatyana Shelkovnikova Lab in @natcellbio.nature.com in collaboration @embl.org
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Olivier Duss @olivierduss.bsky.social · 29/03/2026
Using #SingleMolecule imaging we find that TFs: -boost co-transcriptional #ribosomal #RNA processing! -their binding #dynamics fundamentally differ for mRNA (transient) versus rRNA #transcription (stable)! @biorxivpreprint.bsky.social Anastasiia Chaban @embl.org www.biorxiv.org/content/10.6...
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Dan Bose @danbose.bsky.social · 28/03/2026
Massive thanks to @jhenninger.bsky.social for the thoughtful preview of @katiegelder.bsky.social's recent story on CBP-IDRs. It’s fantastic to see her findings situated in the broader context of one of biology’s most dynamic fields* #IDRs #transcription #condensates www.cell.com/cell-reports...
cell.com
An intrinsically disordered tug of war that fine-tunes acetylation
Acetylation of histones and transcriptional regulators modulates gene expression, but how acetyltransferases define target specificity remains puzzling. In Cell Reports, Gelder et al. have shown how i...
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Reposted by Dan Bose
Cell Reports @cp-cellreports.bsky.social · 25/03/2026
CBP-IDRs regulate acetylation and gene expression
dlvr.it
CBP-IDRs regulate acetylation and gene expression
Gelder et al. demonstrate that intrinsically disordered regions (IDRs) with divergent sequence properties maintain a functional balance between positive and negative regulation of CBP condensates. This intramolecular mechanism tunes CBP’s sensitivity to lysine acetylation; its disruption fundamentally alters chromatin binding, histone acetylation, and gene expression.
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Dan Bose @danbose.bsky.social · 26/03/2026
Congratulations @eddierollins.bsky.social @alicepyne.bsky.social and the team- this is super(coiling) cool!
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