Sign in

Chris LB Graham

@chrislbgraham.bsky.social
147 followers 303 following 20 posts

Research Fellow at University of Warwick. Open Science, Proteins and Lipids.

PostsRepliesMedia
Reposted by Chris LB Graham
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 09/07/2026
SpoIVA contributes to efficient engulfment through a cytoskeletal-like mechanism during Bacillus subtilis sporulation www.biorxiv.org/content/10.64898/20…
063
Reposted by Chris LB Graham
Christophe 🔬 Leterrier @christlet.bsky.social · 15/06/2026
A ratiometric membrane tension probe based on a non-conducing TRAAK channel bearing a split HaloTag. Compares well with Flipper-TR (and no need for lifetime imaging capacity): www.biorxiv.org/content/10.6...
04918
Reposted by Chris LB Graham
Purchase with Purpose @purchase-w-purpose.bsky.social · 31/05/2026
🇪🇺 Meet EuroOffice, Europe’s bold alternative to Microsoft 365, promising sovereignty and control It is based on OnlyOffice and offers a near-like-for-like experience as Microsoft for free. Something for everyone to check out, not only Europeans.
windowscentral.com
EuroOffice emerges as Europe’s sovereignty‑focused alternative to Microsoft 365
Europe’s biggest tech players debut EuroOffice, a sovereign suite designed to challenge Microsoft 365’s dominance.
521523468
Reposted by Chris LB Graham
Wim Meijer @wimgmeijer.bsky.social · 15/02/2026
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. This paper describes a ribozyme, a catalytic RNA molecule, able to do just that.. Fascinating stuff… 🧪🦠 www.science.org/doi/10.1126/...
science.org
A small polymerase ribozyme that can synthesize itself and its complementary strand
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...
25421
Reposted by Chris LB Graham
Patrick Bryant @patrickbryant1.bsky.social · 07/02/2026
Introducing The Structural History of Eukarya (SHE): The first proteome-scale phylogeny constructed entirely from 3D structure. We computed 300 trillion alignments across 1,542 species to map the tree of life. 🧵👇 (1/5)
28439
Reposted by Chris LB Graham
David Negus @davidnegus.bsky.social · 02/02/2026
🚨 New Research Alert! Our team has discovered two new bacteriophages that target Serratia spp.—a major cause of hospital‑associated infections and a growing antibiotic‑resistance threat. 📄 Open‑access article in Journal of Applied Microbiology: doi.org/10.1093/jambio/lxag011
doi.org
Characterization of two novel bacteriophages infecting clinical isolates of Serratia spp. and therapeutic efficacy in a Galleria mellonella model of infection
AbstractAims. This study aimed to isolate virulent bacteriophages (phages) with the capacity to lyse clinical strains belonging to the genus Serratia. Furt
183
Reposted by Chris LB Graham
Tosin Q. Orababa @tosinorababa.bsky.social · 03/02/2026
Excited to share our preprint that describes the mechanism of action of an historical infection remedy called Bald’s Eyesalve. In this preprint, we show that Bald’s Eyesalve has multifaceted mechanism of action against both S. aureus and A. baumannii (1/n).
1167
Reposted by Chris LB Graham
Séamus Holden 🔬🦠🧫 @seamusholden.bsky.social · 02/02/2026
iCASE PhD project available in my lab, combining microscopy method development with high throughput screening of bacteria. Applications to antibiotic drug discovery and screening for new cell division proteins. Collaboration with Cairn Research #microsky #bioimaging www.findaphd.com/phds/project...
findaphd.com
Image-based bacterial phenotyping and antimicrobial drug discovery using smart high-throughput super-resolution microscopy at University of Warwick on FindAPhD.com
PhD Project - Image-based bacterial phenotyping and antimicrobial drug discovery using smart high-throughput super-resolution microscopy at University of Warwick, listed on FindAPhD.com
01411
Reposted by Chris LB Graham
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 30/01/2026
FoldMason is out now in @science.org. It generates accurate multiple structure alignments for thousands of protein structures in seconds. Great work by Cameron L. M. Gilchrist and @milot.bsky.social. 📄 www.science.org/doi/10.1126/... 🌐 search.foldseek.com/foldmason 💾 github.com/steineggerla...
science.org
Multiple protein structure alignment at scale with FoldMason
Protein structure is conserved beyond sequence, making multiple structural alignment (MSTA) essential for analyzing distantly related proteins. Computational prediction methods have vastly extended ou...
4302147
Reposted by Chris LB Graham
Rodrigues Lab @crodrigueslab.bsky.social · 27/01/2026
Check out these tools to detect co-evolution in protein-protein interactions developed by postdoc @chrislbgraham.bsky.social Very useful as a hypothesis generator, complementing protein interaction prediction from Alphafold. www.biorxiv.org/content/10.6...
biorxiv.org
2168
Chris LB Graham @chrislbgraham.bsky.social · 27/01/2026
We finally released a little coevolution pipeline, so you can add coevolution to predicted structures. With this you can understand more how proteins may genetically interact, as heteromers, homomers or hypothetical networks (or perhaps not) www.biorxiv.org/content/10.6...
(Top left) CoEVFold window, MMSEQ2 alignment and a3m production based on query sequence – B subtilis FtsW-PbpB >50% sequence coverage. Red – Low coverage/conservation, Blue/Green – High coverage/conservation (Top right) Coevolution of FtsW-PbpB performed using pipeline on transformed alignment. Indicating regions of intermolecular and intramolecular coevolution Dark Blue – coevolution high, White – no observed coevolution Z score min=0, max=3 (Bottom panel) user input structure FtsW-PbpB predicted by Alphafold, inter-protein coevolution has been indicated using red dashed lines = Coevolution at user thresholds (12A, <1.5 Z score).
030
Reposted by Chris LB Graham
Phill Stansfeld @pstansfeld.bsky.social · 25/12/2025
🌟 New Tool Alert! 
We present MemPrO – a toolkit for orienting and building membrane protein systems: 
✅ Membrane protein orientation 
✅ Mixed membrane building 
✅ Double membranes & curvature 
✅ Peptidoglycan cell wall support 🔗 github.com/pstansfeld/mempro 
📖 pubs.acs.org/doi/10.1021/...
pubs.acs.org
MemPrO: A Predictive Tool for Membrane Protein Orientation
Membrane proteins play a vital role in numerous cellular processes, including ion transport, intercellular communication, and antibiotic resistance. Ensuring their accurate orientation within lipid bi...
04913
Reposted by Chris LB Graham
davidroper2.bsky.social @davidroper2.bsky.social · 19/12/2025
Fantastic to be part of this which was published today, Dr Nic Briggs and newly minted Dr Jack Stone from my lab did the experimental works that contributed to the paper with Christophe Grangeasse and colleagues. @warwicklifesci.bsky.social
051
Reposted by Chris LB Graham
Phill Stansfeld @pstansfeld.bsky.social · 24/11/2025
Super collaboration with @raffaeleieva.bsky.social and @fronzeslab.bsky.social on the LptDEMY complex.
0154
Reposted by Chris LB Graham
Lori L. Burrows @dr-lori-burrows.bsky.social · 13/10/2025
New paper alert! We used our fav technique, genetic suppression, to understand how FimX controls function of the T4P PilB motor ATPase in Pseudomonas aeruginosa. Great collab with the Ellison lab at U Georgia who helped with some fancy microscopy to capture pilus dynamics! doi.org/10.1371/jour...
doi.org
Twitching motility suppressors reveal a role for FimX in type IV pilus extension dynamics
Author summary Type IV pili enable Pseudomonas aeruginosa to attach to surfaces, move (twitch), and form biofilms. Pilus extension is powered by the motor protein PilB, which is regulated by other fac...
12716
Reposted by Chris LB Graham
Nature Methods @natmethods.nature.com · 03/10/2025
CaCoFold-R3D: a probabilistic model that predicts RNA 3D motifs and secondary structure using evolutionary information. www.nature.com/articles/s41...
nature.com
All-at-once RNA folding with 3D motif prediction framed by evolutionary information - Nature Methods
CaCoFold-R3D is a probabilistic model that simultaneously predicts the RNA 3D motifs jointly with the secondary structure in a structural RNA using evolutionary information.
092
Reposted by Chris LB Graham
Nature Methods @natmethods.nature.com · 18/09/2025
GPU-accelerated MMseqs2 offers tremendous speedup for homology retrieval, protein structure prediction with ColabFold, and protein structure search with Foldseek. @martinsteinegger.bsky.social @milot.bsky.social @machine.learning.bio www.nature.com/articles/s41...
nature.com
GPU-accelerated homology search with MMseqs2 - Nature Methods
Graphics processing unit-accelerated MMseqs2 offers tremendous speedups for homology retrieval from metagenomic databases, query-centered multiple sequence alignment generation for structure predictio...
08221
Reposted by Chris LB Graham
Syma Khalid @sykhalid.bsky.social · 03/09/2025
Bit under the weather today, so stayed at home to write a paper…..instead I’ve made an image of a Lego bacterial outer membrane.
0242
Reposted by Chris LB Graham
Michael Deghelt @michaeldeghelt.bsky.social · 29/07/2025
#microsky We challenge the long-standing view that peptidoglycan alone protects cells from bursting. Our study shows that the periplasm — enclosed by OM–PG connections — acts as a pressure buffer essential for osmoprotection in Gram-negative bacteria. 📄 www.nature.com/articles/s41...
nature.com
Peptidoglycan–outer membrane attachment generates periplasmic pressure to prevent lysis in Gram-negative bacteria - Nature Microbiology
Outer membrane attachment to peptidoglycan enables periplasmic pressure to build up and counter cytoplasmic turgor pressure, preventing lysis during osmotic challenges in Escherichia coli.
26540
Chris LB Graham @chrislbgraham.bsky.social · 03/06/2025
We have updated ConservFold. Now it can plot conservation onto whole protein complexes and can set the cutoffs you’d like! Thought it might be useful for people. colab.research.google.com/drive/1Lv-ak... @crodrigueslab.bsky.social
010
Reposted by Chris LB Graham
davidroper2.bsky.social @davidroper2.bsky.social · 28/05/2025
Beta-lactams covalently bind to Penicillin Binding Proteins and have been the mainstay of antimicrobial chemotherapy for decades. In this new paper with colleagues @Bicycle_tx we show a new way to hit old targets: rdcu.be/eoaRI
rdcu.be
Discovery and chemical optimisation of a potent, Bi-cyclic antimicrobial inhibitor of Escherichia coli PBP3
Communications Biology - Discovery of a bicyclic peptide inhibitor of cell wall biosynthesis in the Enterobacterales demonstrates applicability of a modified phage display platform to antibiotic...
074
Reposted by Chris LB Graham
Slow Food @slowfoodhq.bsky.social · 27/05/2025
"Revolutionary"? More like reclaiming wisdom! 👏 French farmers & scientists prove nature-based farming (no #pesticides, no synthetics), the way humans farmed for centuries, still delivers steady yields, stable incomes & boosts biodiversity after 30 years. #ClimateAction f24.my/BCO5.BS
f24.my
Down to Earth - Chemical-free farming brings life back to rural France
Faced with widespread chemical pollution and a dramatic collapse in biodiversity, farmers and scientists in western France have been testing a revolutionary farming model for over 30 years. No pestici...
14515
Reposted by Chris LB Graham
Pedro J. Cabello-Yeves @pedrojcy91.bsky.social · 26/05/2025
Another great collaboration where we studied the type IV SS of CPRs, which certainly opens new avenues for the study of these enigmatic (mostly epibiotic) organisms! @frvalera.bsky.social www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
The type IV secretion system of Patescibacteria is homologous to the bacterial monoderm conjugation machinery
The Candidate Phyla Radiation, also known as Patescibacteria, represents a vast and diverse division of bacteria that has come to light via culture-independent ‘omics’ technologies. Their limited bios...
021
Reposted by Chris LB Graham
Max Bonomi @bonomimax.bsky.social · 07/05/2025
AlphaFold’s success builds on decades of tech advances, massive efforts to collect, curate, and share structural data, and rigorous benchmarking. What will it take to see a similar leap in structural ensemble prediction? @stephanieaw.bsky.social and I share some thoughts here 👇 Feedback is welcome!
1215
Reposted by Chris LB Graham
Chris LB Graham @chrislbgraham.bsky.social · 03/05/2025
Just released a pre-print: www.biorxiv.org/content/10.1... We simulate lipid membrane toroids of bacteria, representing the point where one cell splits into two. We see they are stable and then look at how a key protein might behave at them @crodrigueslab.bsky.social @pstansfeld.bsky.social
0145
Chris LB Graham @chrislbgraham.bsky.social · 03/05/2025
Just released a pre-print: www.biorxiv.org/content/10.1... We simulate lipid membrane toroids of bacteria, representing the point where one cell splits into two. We see they are stable and then look at how a key protein might behave at them @crodrigueslab.bsky.social @pstansfeld.bsky.social
0145
Reposted by Chris LB Graham
ChimeraX @chimerax.ucsf.edu · 01/05/2025
ChimeraX daily builds can predict small complexes of proteins, nucleic acids and small molecules using Boltz on your Mac, Windows or Linux computer without Nvidia graphics. www.rbvi.ucsf.edu/chimerax/dat...
36222
Reposted by Chris LB Graham
Nature @nature.com · 30/04/2025
Nature research paper: The distribution of subsurface microplastics in the ocean go.nature.com/4iHBBKS
go.nature.com
The distribution of subsurface microplastics in the ocean - Nature
Global data collected between 2014 and 2024 provide insights into the distribution and potential transport mechanisms of subsurface microplastics throughout the oceanic water column.
13813
Reposted by Chris LB Graham
Taylor priest @taylorpriest.bsky.social · 22/04/2025
A huge, new resource for plasmid research - PlasmidScope is a database of 852,000 #plasmid sequences with a rich set of annotations, automated online analysis and interactive visualisation academic.oup.com/nar/article/...
academic.oup.com
PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools
Abstract. Plasmids are extrachromosomal genetic molecules that replicate independent of chromosomes in bacteria, archaea, and eukaryotic organisms. They co
312155
Reposted by Chris LB Graham
eLife @elife.bsky.social · 14/04/2025
Introducing SAVEMONEY, AKA ‘Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments for You’ A new tool offering a faster, cheaper computational approach to democratise whole-plasmid sequencing. buff.ly/ov7YumB
Examples of the pre-survey outputs.
1126
Reposted by Chris LB Graham
Raffaele Ieva @raffaeleieva.bsky.social · 11/04/2025
Here our new preprint on the LPS holo-translocon doi.org/10.1101/2025... , collaboration with Yves Quentin @JulieMarcoux @fronzeslab.bsky.social @pstansfeld.bsky.social - @cbitoulouse.bsky.social
doi.org
Structural Basis of Lipopolysaccharide Assembly by the Outer Membrane Translocon Holo-Complex
Lipopolysaccharide (LPS) assembly at the surfaces-exposed leaflet of the bacterial outer membrane (OM) is mediated by the OM LPS translocon. An essential transmembrane beta-barrel protein, LptD, and a...
12817
Reposted by Chris LB Graham
Allister Crow @allistercrow.bsky.social · 07/04/2025
New preprint! FtsEX-EnvC is a Type VII ABC transporter that activates the periplasmic enzymes needed to break the peptidoglycan layer during cell division. We tested the importance of structural features underpinning activation and the auto-inhibition mechanism that keeps it all in check.
biorxiv.org
Probing the mechanism of peptidoglycan amidase activation by FtsEX-EnvC
The FtsEX-EnvC-AmiA/B system is a key component of the E. coli cell division machinery that directs breakage of the peptidoglycan layer during separation of daughter cells. Structural and mechanistic ...
0177
Reposted by Chris LB Graham
PNAS Nexus @pnasnexus.org · 25/03/2025
Enzymes found in landfills around the world may be able to break down plastic waste. By using metagenomics and machine learning, a global collection of plastic biocatalytic enzymes has been identified. Plastics may not be forever, anymore. In PNAS Nexus: academic.oup.com/pnasnexus/ar...
Landfill. Stock photo.
42410
Reposted by Chris LB Graham
Kelvin Lau @klausenhauser on 🙅‍♂️🐘🪡 @klausenhauser.bsky.social · 25/03/2025
Two esteemed colleagues both declared to me to eat more fries and more wine if we need to live longer. It’s gonna be a great Tuesday! I also hope the cafeteria adds more fried foods to the menu www.nature.com/articles/s41...
nature.com
Optimal dietary patterns for healthy aging - Nature Medicine
In two longitudinal cohorts followed for 30 years, the associations of eight different dietary patterns with healthy aging—encompassing cognitive, physical and mental health—were studied, identifying ...
061
Chris LB Graham @chrislbgraham.bsky.social · 21/03/2025
London April 11th and 12th, I’m doing a tiny workshop (I’ll be there the Saturday) with my friend on how to do PCR on worms plastic poop. It could be interesting if anyone wants to teach anyone a bit of hands on science on a weekend. PCR: barcode bacterial DNA www.eventbrite.co.uk/e/pcr-barcod...
eventbrite.co.uk
PCR: barcode bacterial DNA
Grow bacteria, extract their DNA and investigate like a scientist. Possibly the only serious PCR experiment open to non-student in London
010
Reposted by Chris LB Graham
Antonia Sagona @antoniasagona.bsky.social · 18/03/2025
pubs.acs.org/doi/10.1021/... New paper from the lab! Thanks to Fabrizio Alberti and his lab for the great collaboration and to Michael Tadesse for all his hard work!! Thanks @warwicklifesci.bsky.social, MIBTP and BBSRC for funding!
pubs.acs.org
One-Two Punch: Phage-Antibiotic Synergy Observed against Staphylococcus aureus by Combining Pleurotin and Phage K
The surge in antibiotic-resistant Staphylococcus aureus infections has been deemed a major public health concern. There is an urgent need for novel antimicrobial therapies, chemical and nonantibiotic. The basidiomycota-derived, secondary metabolite pleurotin has been shown to be effective against Gram-positive bacteria, while bacteriophages could be the ultimate nonantibiotic alternative. In this study, the combination of pleurotin and phage K targeting S. aureus was examined. Pleurotin was isolated from the basidiomycota fungus Hohenbuehelia grisea. The cytotoxicity of pleurotin was assessed in two human cell lines in comparison to pleuromutilin, vancomycin, and phage K. The antibiotics were then tested independently or in combination with phage K against two S. aureus strains. Cytotoxicity of pleurotin in human cells was comparable to vancomycin and pleuromutilin. Results suggest that adding phage K has a synergistic effect and can lower the MIC for pleurotin, pleuromutilin, and vancomycin. This demonstrates that pleurotin could be a viable antistaphylococcal drug.
0137
Reposted by Chris LB Graham
davidroper2.bsky.social @davidroper2.bsky.social · 05/03/2025
Come to the opening of the Warwick Integrated Structural Biology Symposium! @uni-of-warwick.bsky.social @warwicklifesci.bsky.social
055
Reposted by Chris LB Graham
Branko Rihtman @cyanoney.bsky.social · 25/02/2025
A really nice tool, like others that Artyom has produced. Highly recommend.
053
Reposted by Chris LB Graham
School of Life Sciences, University of Warwick @warwicklifesci.bsky.social · 21/02/2025
Join us at the next Science on the Hill event on Tuesday 25 February. We’ll delve into how different biological systems combat attacks from other organisms - highlighting the human and plant immune systems. Find out more and book your place bit.ly/435PAGo
bit.ly
Science on the Hill - Host Defence on the Offensive! — Resonate Festival
Science on this Hill is back for 2025! Visit the team at Gibbet Hill to find out about how biological systems combat attacks from other organisms, discover the techniques used by human and plant immun...
023
Reposted by Chris LB Graham
davidroper2.bsky.social @davidroper2.bsky.social · 19/02/2025
come and join in !
031