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Clémence Marchal

@clemmar.bsky.social
597 followers 657 following 42 posts

Group leader at @ipbhalle.bsky.social Plant - Microbe Interactions 🌱🦠🍄 She/her

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Reposted by Clémence Marchal
GeminiTeamLab @geminiteamlab.bsky.social · 18/09/2026
Now out! Together with Kenneth Berendzen, Yu Zhou et al., in a commendable team effort, set up a FANS-FAPS protocol for the isolation of plant Cajal bodies @zmbp-tuebingen.bsky.social — revealing kingdom-specific protein composition: academic.oup.com/nar/article/...
academic.oup.com
Proteome profiling of plant Cajal bodies uncovers kingdom-specific components
Abstract. Membraneless organelles (MLOs) in eukaryotic cells, such as the nuclear Cajal body (CB), have been notoriously difficult to biochemically isolate
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Adam Bentham @adamrbentham.bsky.social · 30/09/2026
🚨 Please share! 🚨 I'm recruiting a fully funded 4-year Gatsby Sainsbury PhD studentship at Durham! 🌱🤖 Designing plant immune receptors from scratch, combining AI protein design with structural biology and plant immunity. If you're interested please get in touch! benthamlab.org shorturl.at/U2PdV
benthamlab.org
Bentham Lab — Durham University
Bentham Lab, Centre for Programmable Biological Matter, Durham University. Structural biology and de novo protein design applied to host-pathogen interactions, plant immunity, and neglected tropical d...
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Andrew Urquhart @starships-andrew.bsky.social · 24/09/2026
Another step in the #Starship story - they move via a circular intermediate. Helps explain how these elements horizontally transfer and means that we can modify them into transformation vectors (starmids). www.biorxiv.org/content/10.6...
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Sebastian Samwald (Basti) he/him @samwalds.bsky.social · 23/09/2026
This has originally developed out of a thought along the lines of: "What can you do if you only manage to get weak fluorescence signals?" A short explaining thread 🧵
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Tonni Andersen @tonnigrubeandersen.bsky.social · 22/09/2026
Check out our new preprint: a very cool fluorescence tool developed by @samwalds.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
Intronised fluorophores improve reporter output and biosensor expression in plants
Genetically encoded biosensors are central to plant cell biology, but low reporter signal can limit their use. Here, we developed modular intronised fluorophores to improve reporter output in transien...
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Martin Pacesa @martinpacesa.bsky.social · 21/09/2026
ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi...
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Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
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Camilla Molinari @camilla-moli.bsky.social · 14/09/2026
Excited to share this pre-print from my PhD work! We explore a Pmk1-Mst12-Bip1 network required for appressorium-mediated infection by the blast fungus 🌾 www.biorxiv.org/content/10.6... Thread 👇
biorxiv.org
A Pmk1-Regulated Mst12-Bip1 Network Coordinates Appressorium Function, Effector Deployment, and Invasive Growth by Magnaporthe oryzae
To cause rice blast disease, the filamentous fungus Magnaporthe oryzae develops a specialised infection cell called an appressorium, which generates enormous turgor to breach the rice leaf cuticle. Al...
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 13/09/2026
Fold Spacer lets you fly through protein structures (Weekend project #2). It’s my first game: I originally set out to build a racer with structures as the tracks, but was a little too crazy. So it became this instead. You can upload your own structures. 🌐 martin-steinegger.github.io/Fold-Spacer/
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Clémence Marchal @clemmar.bsky.social · 12/09/2026
Goodbye Norwich! I had such a great time at the @kamounlab.bsky.social Alumni and friends meeting, followed by #ECPP2026 and #BSPP2026, reuniting with old friends, and making new ones. It's always so special to come back to the fine city. Until next time!
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Mihaly Badonyi @mbadonyi.bsky.social · 10/09/2026
AlphaFold can now predict protein complexes at unprecedented scale. But once we have a predicted complex, the core question of how much we should trust the interface remains. Existing confidence scores are useful, but their meaning is not always obvious. #alphafold
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Luiselotte Rausch @luiselotterausch.bsky.social · 11/09/2026
New Preprint! We use #AFM and CarboTag-based #FLIM to describe rapid cell wall mechanisms of Phytosulfokines & Brassinosteroids and investigate how these processes are initiated on the nanoscale by using #sptPALM! PS: This is also the main story of my PhD project😊✌🏻 www.biorxiv.org/content/10.6...
biorxiv.org
Distinct nanoscale dynamics of growth receptor complexes link hormone perception to rapid cell wall remodeling
Cell elongation is a fundamental process allowing plants to change size and shape, a process governed by several growth promoting hormones. While hormones such as brassinosteroids (BRs) and phytosulfo...
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Andy Posbe @adnroide.bsky.social · 10/09/2026
Excited to share Fold on Tight! 🎉 We distil recent advances in plant immunity into 10 lessons for using AI structure prediction critically and effectively, in plants and beyond. 📝 zenodo.org/records/2210...
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Remco Stam @rstam.bsky.social · 11/09/2026
New preprint! There have been quite a few papers about RLP and RLK receptors, but none of them have a truly reproducible annotation pipeline (including my own...)... We finally made such a pipeline and look more systematically at RLPs within tomato. www.biorxiv.org/content/10.6...
biorxiv.org
PlantLRR-PRR:A Reproducible Annotation Pipeline Reveals Contrasting Evolution of Developmental and Defense Receptor-Like Proteins in Tomato
Plants perceive external and internal signals via receptors to modulate their growth, development, and defenses. Leucine-rich-repeat receptor-like-kinase (RLKs) and receptor-like-proteins (RLPs) are t...
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Arvid Herrmann 🍃 @arvidhema.bsky.social · 08/09/2026
Very happy to see this work out as a preprint! 🌽🌱 How are shoot stem cells specified in the maize embryo? We uncover a small RNA-driven morphogenic circuit linking positional information with auxin, cell wall mechanics & cell division patterning. Check it out 👇 www.biorxiv.org/content/10.6...
biorxiv.org
Specification of embryonic shoot stem cells via a small RNA-driven morphogenic circuit
The specification of embryonic stem cells capable of self-renewing and differentiation into virtually any cell type, is one of the most consequential events in the development of a multicellular organ...
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Arvid Herrmann 🍃 @arvidhema.bsky.social · 08/09/2026
A little late to share this, but very happy to see our review published in JXB! We discuss how plants control which small RNAs move, where they move, and where they act....and the emerging mechanisms that give this mobility remarkable precision. academic.oup.com/jxb/article-...
academic.oup.com
Precision in motion: how plants route and control the mobility of small RNAs
Plants use mobile small RNAs to coordinate development and stress responses. Here, we review recent advances revealing mechanisms shaping the mobile sRNA p
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Sophien Kamoun @kamounlab.bsky.social · 08/09/2026
A plant pathologist at Hutton in Dundee, Scotland #scijobs hutton.current-vacancies.com/Jobs/Advert/...
hutton.current-vacancies.com
Research Scientist – Plant Pathology - Dundee
Main Purpose of Job We are seeking a highly motivated researcher with a PhD and expertise in plant pathology to join our group working on epidemiology, disease control and IPM. The focus of the role...
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Sophien Kamoun @kamounlab.bsky.social · 07/09/2026
Live from our Alumni & Friends event—NLR bioengineers always wear striped shirts 🦓 💥 🤯
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Mariana Schuster @marischuster.bsky.social · 07/09/2026
I'm excited to share that my newly funded #ERCStG FRONTERA is recruiting two postdoctoral researchers at @ipbhalle.bsky.social 🌱🔬 If you are passionate about plant immunity, proteolysis, membrane proteins, or proteomics, I'd love to hear from you. 🧵 Please RT/share!
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IPB Halle @ipbhalle.bsky.social · 07/09/2026
We are looking for a postdoctoral researcher who will focus on Plant Membrane Biochemistry and Chemoproteomics (m/f/d) (10/2026) ipb-halle.mhm.jobs/34-postdocto...
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IPB Halle @ipbhalle.bsky.social · 07/09/2026
We are looking for a postdoctoral researcher working on N-terminomics and Protease Degradomics (m/f/d) (11/2026) ipb-halle.mhm.jobs/33-postdocto...
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Sophien Kamoun @kamounlab.bsky.social · 06/09/2026
Kamoun Lab Alumni & Friends—warm-up event! kamounlab.dreamhosters.com/Alumni_2026
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Max Jordan @maxljordan.bsky.social · 04/09/2026
Really excited to share our new manuscript on how the #NLR protein #AfsR regulates #Streptomyces antibiotic production - and how we can use its similarity to plant NLR immune receptors to enhance this production! 📄🧵 (1/17) @johninnescentre.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
A conserved NLR activation switch governs global transcriptional control of antibiotic biosynthesis in Streptomyces
Nucleotide-binding and oligomerization domain-like receptors (NLRs) are conserved molecular switches that regulate innate immunity across diverse domains of life. While best known for their roles in i...
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Daniel Croll @danielcroll.bsky.social · 04/09/2026
Our lab is looking for PhD students to join us in 2027 🎓🎉 The projects can be structured around our research directions: - Transposable element dynamics - Fungal pangenomics - ML/language model genomics applications - Pathogen adaptation More here pathogen-genomics.org ("Jobs") and please share! 🙏
pathogen-genomics.org
Evolutionary genomics of pathogens
Croll lab at University of Neuchatel. The lab of Daniel Croll wants to understand how pathogens evolve to cause disease. For this, we mainly focus on major crop pathogens to unravel mechanisms of rapi...
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Juan Carlos De la Concepcion @delaconcepcionjc.bsky.social · 03/09/2026
Super excited of obtaining a ERCstg to support our project MORPHEUS 🎉🎉 Receiving this grant is a pivotal moment for my lab at @zmbp-tuebingen.bsky.social as will allow to extend the scope of our research in cellular reprogramming using ribosome dormancy as entry point 😴🌱❄️🔬 @erc.europa.eu
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Mariana Schuster @marischuster.bsky.social · 03/09/2026
Thrilled to have the opportunity to investigate the role of membrane protein proteolysis in plant immunity through the ERC Starting Grant FRONTERA! A heartfelt thank you to my mentors, friends, and family whose support, encouragement, and guidance made this possible. #ERCStG @erc.europa.eu
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IPB Halle @ipbhalle.bsky.social · 03/09/2026
Our junior research group leader, Mariana Schuster, has been awarded the ERC Starting Grant, which comes with a grant of 1.5 million euros. Congratulations @marischuster.bsky.social! #ERCStg @erc.europa.eu More Information: www.ipb-halle.de/en/article/e...
ipb-halle.de
ERC Starting Grant: 1.5 Million Euros for Excellent Research on Plant Immunity
IPB Press Release, September 3, 2026 A great success for plant research at the Leibniz Institute of Plant Biochemistry (IPB) in Halle: The independent junior research group leader Mariana Schuster has been awarded a highly funded ERC Starting Grant from the European Research Council for her FRONTERA project. Over a period of five years and with funding of 1.5 million euros, she and her team will investigate how the targeted cleavage of membrane proteins regulates the immune defense of plants.
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Nonia Pariente @npariente.bsky.social · 01/09/2026
This is an issue particularly close to my heart - women's basic physiology is far from understood, chronically underfunded and understudied. This needs to change to improve health outcomes. Here @plosbiology.org calls for more funding for basic research in this area & more exposure of the results 🧪
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Laura Medina-Puche @lauramepul.bsky.social · 31/08/2026
🌱 Job alert! A PhD position starting in 2027 is available with me and Andrea Gust @zmbp-tuebingen.bsky.social as part of the Cluster of Excellence @greenrobust.de 👉 Interested? Apply now &/or share! uni-tuebingen.de/universitaet... #PlantSciJob #PhDPosition
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Cecile Lorrain @ccilelorrain.bsky.social · 31/08/2026
Now accepted: Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina academic.oup.com/g3journal/ar...
academic.oup.com
Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina
Abstract. Dikaryotic rust fungi maintain two distinct haploid nuclei for most of their life cycle, making their large, repeat-rich genomes difficult to ass
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Clémence Marchal @clemmar.bsky.social · 28/08/2026
Today we had the first (of many) Langner/Marchal joint lab day. We had great project presentations and discussions, followed by enjoying some tasty food together 🌾🌱🌿. Thank you to all of our lab members for this great day! 😁 @thorstenlangner.bsky.social
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Andre Kuhn @signalintegrator.bsky.social · 25/08/2026
PhD-position available in my group! We are looking for a dedicated PhD candidate to investigate the biochemical basis of rapid signal integration in plants. If this is you, apply and join us in Amsterdam! @swammerdamuva.bsky.social More information: werkenbij.uva.nl/en/vacancies...
werkenbij.uva.nl
Vacancy — PhD position - Biochemical characterisation of signal integration in plants
<p><span>Are you fascinated by how protein complexes allow plant cells to rapidly integrate environmental information? Do you have a passion for molecular biology, protein biochemistry and quantitativ...
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ZMBP @zmbp-tuebingen.bsky.social · 21/08/2026
📣 Job alert! PhD position on Regulation of Pattern Scaling in Plant Stem Cell Niches in Marja Timmermans's lab and co-supervised by @cecilialaram.bsky.social The project is part of the @cerealcell.bsky.social consortium. The position is available from October 1st Apply now or share it! #PlantSciJob
Advert of the PhD position. Applications should be sent to Marja Timmermans or Cecilia Lara-Mondragón as a single pdf containing the motivation letter, CV, and contact details of 3 referees. 
The advert shows a maize plant and several images of maize shoot apical meristems.
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Margot Smit @likeyoda1.bsky.social · 24/08/2026
📣 Job alert! 2 Positions starting 2027. PhD position with me and @bayerlab.bsky.social on Robustness of embryonic and stomatal development, part of @greenrobust.de Postdoc position on the regulation of cell state, following up on some exciting snRNAseq dat! Apply now or share! #PlantSciJob
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Mary Williams @PlantTeaching @plantteaching.bsky.social · 20/08/2026
You're invited to play a puzzle created by mary. I love wordle, and found out I could make my own puzzle. Hint: It's a plant word! www.nytimes.com/games/create...
nytimes.com
Wordle Puzzle Created By mary
Choose a word for friends to guess, then share your own puzzle.
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GeminiTeamLab @geminiteamlab.bsky.social · 18/08/2026
So excited and incredibly grateful for this opportunity! 🦠🌱🧬
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Max Planck Institute for Plant Breeding Research @mpipz.bsky.social · 18/08/2026
🔬Big news🥳 We’re excited to welcome Prof. Dr. Rosa Lozano-Durán as new Director and head of the Department of Plant Virology @mpipz.bsky.social Her research focuses on how plant viruses interact with their hosts. 🎉Welcome to MPIPZ, Rosa 🌿🌱 www.mpipz.mpg.de/5842514/loza...
mpipz.mpg.de
The Max Planck Institute for Plant Breeding Research welcomes Prof. Dr. Rosa Lozano-Durán as new director
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John Innes Centre @johninnescentre.bsky.social · 17/08/2026
VACANCY - Funded by @European Research Council (ERC), we have three exciting opportunities for Postdoctoral Researchers to join the newly appointed Dr @hassansalem.bsky.social Group. These roles span: Developmental biology - okt.to/nq50wC 🧵
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SNP2Prot @snp2prot.bsky.social · 13/08/2026
Mark your calendars‼️ The SNP2PROT team hosts the "Plant Genetic Variation meets Protein Architecture" international conference, 21-23 June 2027, at the Leopoldina, Halle (Saale). Join us for interdisciplinary discussions, coffee and networking! Registration opens: 17th October, 2026 ⏰ #SNP2Prot
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Etienne Bucher 🌾🧬🇪🇺 @plantepigenetics.ch · 09/08/2026
❗ French agriculture is experiencing one of the worst nationwide agricultural disasters since 1945 due to drought. 🔻 corn -41% 🔻 sorghum - 61% (promoted as drought tolerant! 🤔 ) 🔻 wheat -31% 🔻 potato -42% 🔻 legumes -30 to -70% A huge challenge for all. www.linkedin.com/feed/update/...
linkedin.com
La situation agricole française n’est plus au bord du gouffre, comme elle pouvait l’être en 2022 : cette fois-ci, elle est dans le gouffre. Il n’est désormais plus inconcevable que nous soyons en… | S...
La situation agricole française n’est plus au bord du gouffre, comme elle pouvait l’être en 2022 : cette fois-ci, elle est dans le gouffre. Il n’est désormais plus inconcevable que nous soyons en trai...
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Margot Smit @likeyoda1.bsky.social · 11/08/2026
Fresh preprint online from our group! We find that stomatal maturation IS possible in the embryo, when they lack ERECTA signaling, but then still, only at the cotyledon tip. A thread. www.biorxiv.org/content/10.6...
biorxiv.org
ERECTA signaling controls the timing of Arabidopsis Guard Cell maturation at the embryonic leaf tip
While cell identities are established early during embryogenesis, these cells remain immature until germination, and the mechanisms enforcing this developmental pause are poorly understood. Embryonic ...
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Lorenz Oberkofler @oberkoflerlorenz.bsky.social · 10/08/2026
Super happy to finally share our preprint with the community! 🎉 Fungal extracellular vesicles deliver RNA cargo into host cells - but how do they get through the plant cell wall? This question puzzled us and the field for years… 🧵 1/6
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Josh Bennett @joshwbennett.bsky.social · 07/08/2026
I am really excited to share the first chapter of my PhD, where we characterise a genetically linked NLR/MLKL pair underpinning the Rwt3 resistance locus in wheat! With yet another KFP involved in monocot immunity 🌾 www.biorxiv.org/content/10.6...
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Juan Carlos De la Concepcion @delaconcepcionjc.bsky.social · 05/08/2026
PLEASE SHARE! New job openings in my lab @zmbp-tuebingen.bsky.social. We have a broad interest into the mechanistic basis of how molecular complexes are rewired during cellular development in plants and during invasion by pathogens. 🌱🍄🔬 See details below 👇 #PlantSciJobs
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Yasin Dagdas @plantophagy.bsky.social · 29/07/2026
@oeaw.bsky.social is searching for the next #director of @gmivienna.bsky.social ‼️It’s a huge opportunity to shape the future of #plantscience oeawnr.onlyfy.jobs/de/job/u3g5t...
oeawnr.onlyfy.jobs
Scientific Director (f/m/x)
OeAW - Discovering the futureThe Gregor Mendel Institute of Molecular Plant Biology (GMI), part of the Austrian Academy of Sciences (OeAW), is seeking to appoint a visionary Scientific Director to lea
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GeminiTeamLab @geminiteamlab.bsky.social · 25/07/2026
How does a geminivirus replicate its genome using a pick&mix strategy with host proteins? 🦠🦠🌱🧬 Our new preprint identifies plant proteins repurposed by geminiviruses to carry out rolling-circle replication. Congrats @chaonan123.bsky.social , who spearheaded this work! www.biorxiv.org/content/10.6...
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Elke Barbez @elkebarbez.bsky.social · 11/03/2026
Want to image apoplastic pH in plants? 🔬 Two new papers from our team offer a full workflow plus open access analysis tools. Congrats to @aroessling.bsky.social, Niklas Mayle and @lguerard.bsky.social Nature Protocols: rdcu.be/e7R2E BMC Methods: lnkd.in/dctpWJ3X Happy Imaging!
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Gabriel Schaaf @gabrielschaaf.bsky.social · 22/07/2026
Please share! 🌱🤖 Permanent W2 Professorship in crop & plant sciences @ PhenoRob, University of Bonn. Especially encouraged: crop genome engineering, sustainable pest control, or sustainable disease control. Expertise in one area is enough. Apply by Sept. 30, 2026. www.uni-bonn.de/en/universit...
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Yo Akiyama @yoakiyama.bsky.social · 21/07/2026
Excited to share our now published paper @cp-cell.bsky.social highlighting advances in modeling the evolution of protein-protein interactions with MSA Pairformer. Big thanks to Zhidian Zhang, Olivia Tang, @eunbelivable.bsky.social @milot.bsky.social @martinsteinegger.bsky.social and @sokrypton.org!
cell.com
Expanding the scope of protein language modeling to protein-protein interactions with MSA Pairformer
Protein language models have excelled at modeling individual proteins, but extending these capabilities to protein complexes remains a major challenge. MSA Pairformer, a parameter-efficient protein la...
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Gitta Coaker @gittacoaker.bsky.social · 21/07/2026
Fusarium oxysporum infection activates ABA signaling to drive root vascular remodeling, creating structural barriers that restrict pathogen spread. Developmentally encoded defense. #PlantImmunity www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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