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Abigail Lind

@abigailllind.bsky.social
1K followers 540 following 11 posts

Microbes, genomes, microbial genomes. Assistant professor at Georgia Tech.

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Abigail Lind @abigailllind.bsky.social · 22/09/2026
Come be my colleague! My department (Biological Sciences at Georgia Tech) is hiring a tenure-track professor in the area of Computational Genetics. The job posting is here: tinyurl.com/5fxwcds3
tinyurl.com
Careers
Georgia Tech prides itself on its technological resources, collaborations, high-quality student body, and its commitment to building an outstanding and diverse community of learning, discovery, and creation. We strongly encourage applicants whose values align with our institutional values, as outlined in our strategic plan. These values include academic excellence, diversity of thought and experience, inquiry and innovation, collaboration and community, and ethical behavior and stewardship. Georgia Tech has policies to promote a healthy work-life balance and is aware that attracting faculty may require meeting the needs of two careers.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 18/03/2026
A bacterial gene acquired by parasitoid wasps contributes to venom secretion against host defence -in @embojournal.org with @rokaslab.bsky.social link.springer.com/article/10.1...
link.springer.com
A bacterial gene acquired by parasitoid wasps contributes to venom secretion against host defence - The EMBO Journal
Horizontal gene transfer (HGT) is an important source of gene innovation in prokaryotic and eukaryotic organisms. Several genes acquired by hosts of parasitoid wasps via HGT have been reported to prot...
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Matthew Hahn @3rdreviewer.bsky.social · 06/03/2026
This is an amazing piece of scientific satire by @russcd.bsky.social. The first sentence alone is a banger: "The defining goal of the academic endeavor is to establish a single perfect value that completely summarizes entire careers’ achievements." academic.oup.com/mbe/article/...
academic.oup.com
The core-pivotal index: a geometry-first approach to academic impact
The defining goal of the academic endeavor is to establish a single perfect value that completely summarizes entire careers’ achievements. Such an index wo
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HittingerLab @hittingerlab.bsky.social · 04/02/2026
With the @rokaslab.bsky.social, three novel whole genome duplication (WGD) events were discovered in the Saccharomycotina yeast species in the Dipodascales clade. Before now, only four WGD events were known in fungi. This work suggests WGD may be underreported. www.sciencedirect.com/science/arti...
sciencedirect.com
Discovery of additional ancient genome duplications in yeasts
Whole-genome duplication (WGD) has had profound macroevolutionary impacts on diverse lineages,1,2 preceding adaptive radiations in vertebrates,3,4,5 t…
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Lukas VF Novak @animalculum.bsky.social · 08/01/2026
How a parasite gave up sex to find more hosts—and why its victory won't last phys.org/news/2026-01... Host range expansion of asexual parasite can be explained by loss of adaptions in Muller’s Ratchet www.nature.com/articles/s41... #Protists #Microbes #Parasites #Giardia #Evolution
electron microscopy picture of a microbial cell with multiple flagella
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Waggoner Lab @labwaggoner.bsky.social · 17/12/2025
Recombination between strains fuels pervasive adaptive evolution among human gut commensal bacteria, and strongly implicate host diet and lifestyle as critical selection pressures @nature.com @nanditagarud.bsky.social www.nature.com/articles/s41...
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angela oliverio @oliverio.bsky.social · 25/11/2025
Introducing ** Incendiamoeba **, a eukaryote that can live at temperatures well beyond what we thought possible. 63C!! Read @hbrappap.bsky.social thread to see what we’ve already started to learn from this amazing organism! doi.org/10.1101/2025... #MicroSky #protistsonsky 🧪 #evobio
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Marnix Medema @marnixmedema.bsky.social · 10/12/2025
Now out in @asm.org #mSystems! journals.asm.org/doi/10.1128/... Congratulations to Robert and thanks to all collaborators. See thread below for a summary of the work, exploring the use of cross-species coexpression analyses to predict primary and secondary metabolic interactions in microbiomes.
journals.asm.org
Using cross-species co-expression to predict metabolic interactions in microbiomes | mSystems
An improved mechanistic understanding of microbial interactions can guide targeted interventions or inform the rational design of microbial communities to optimize them for applications such as pathog...
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Michael Baym @baym.lol · 20/11/2025
Hot off the press! Our latest paper led by @fernpizza.bsky.social, understanding how plasmids evolve inside cells. These small, self-replicating DNA circles live inside bacteria and carry antibiotic resistance genes, but also compete with one another to replicate. 1/ www.science.org/doi/10.1126/...
science.org
Intracellular competition shapes plasmid population dynamics
From populations of multicellular organisms to selfish genetic elements, conflicts between levels of biological organization are central to evolution. Plasmids are extrachromosomal, self-replicating g...
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Dr Selena Wisnom @lswisnom.bsky.social · 03/11/2025
Academics in Assyria in the 7th c BC complain that admin is preventing them from doing research and teaching
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Abigail Lind @abigailllind.bsky.social · 24/10/2025
What a hook. Also, cool work!
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Martial Marbouty @mmarbout.bsky.social · 19/09/2025
You like phages ? In this publication, we use metaHiC and our new version of the MetaTOR pipeline to challenge the traditional view of phages with a narrow host range. @rkoszul.bsky.social @natmicrobiol.nature.com @cnrs.fr @institutpasteur.bsky.social www.nature.com/articles/s41...
nature.com
Phages with a broad host range are common across ecosystems - Nature Microbiology
Proximity-ligation-based sequencing from 111 samples and 5 environments reveals that a substantial proportion of phages infect multiple species.
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Jason Stajich @hyphaltip.bsky.social · 16/09/2025
Assistant Professor (Quantitative Microbe-Plant-Environment Interactions), Dept of Microbiology, Fall 2026 apply.interfolio.com/173345 at University of Tennessee - Knoxville. Position is part of a faculty cluster hire in Bioinformatics, Genomics and Quantitative-based Solutions for Food Security.
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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Benjamin Wolfe @benwolfe.bsky.social · 16/09/2025
Such a delight to share our work on the evolution of a cheese rind fungus in @currentbiology.bsky.social. This is the fantastic PhD work of @nicolasleonlouw.bsky.social and resulted from amazing collaborations, a wedding proposal(!), an undergrad course, & more! 🧵 www.cell.com/current-biol...
cell.com
Long-term monitoring of a North American cheese cave reveals mechanisms and consequences of fungal adaptation
Using a unique longitudinal sampling approach, Louw et al. demonstrate how a cheese-associated Penicillium population has adapted in an artisan cheese production facility in Vermont, USA. Adaptation i...
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Seth Bordenstein @symbionticism.bsky.social · 08/09/2025
🎙️ Job Announcement: Penn State is seeking an ASSISTANT PROFESSOR in MICROBIOLOGY (any subdiscipline) in the Department of Biochemistry and Molecular Biology. Learn more and Join the Microbiome Jubilee: psu.wd1.myworkdayjobs.com/en-US/PSU_Ac...
psu.wd1.myworkdayjobs.com
Assistant Professor in Microbiology
APPLICATION INSTRUCTIONS: CURRENT PENN STATE EMPLOYEE (faculty, staff, technical service, or student), please login to Workday to complete the internal application process. Please do not apply here, a...
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Dan Sloan @sloanevolab.bsky.social · 08/09/2025
The Department of Biology at Colorado State University is hiring an Assistant Professor in the area of plant-microbe interactions! Please spread the word! jobs.colostate.edu/postings/165...
jobs.colostate.edu
Assistant Professor Plant-Microbe Interactions
We seek a creative, collaborative, and visionary plant biologist to establish an internationally recognized research program at the forefront of plant-microbe interactions aimed at understanding how t...
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Abigail Lind @abigailllind.bsky.social · 04/09/2025
Cool paper - pathogen bullies Candida into releasing arginine, increasing pathogen virulence
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Cameron Thrash @jcamthrash.bsky.social · 04/09/2025
Towards a trait-based framework for protist ecology and evolution www.cell.com/trends/micro... #jcampubs
cell.com
Towards a trait-based framework for protist ecology and evolution
Protists comprise the vast majority of eukaryotic genetic and functional diversity. While they have traditionally been difficult to study due to their small size and varied phenotypes, environmental s...
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angela oliverio @oliverio.bsky.social · 22/08/2025
New lab pre-print up! "Twelve species of human parasites make up half the literature on microbial eukaryotes" doi.org/10.1101/2025... We (led by UG Joanna Lepper and with @hbrappap.bsky.social) quantified all mentions of protist species in the scientific literature 🧵 #protistsonsky #microsky
doi.org
Twelve species of human parasites make up half of the literature on microbial eukaryotes
Although microbial eukaryotes comprise the majority of eukaryotic phylogenetic diversity and inhabit nearly all ecosystems globally, most research focuses on only a few species of human parasites. Her...
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Anny Chung (鍾彥儀) @yyachung.bsky.social · 21/08/2025
🍄 UGA Plant Pathology is hiring TT faculty in Mycology/Fungal Biology/Fungal Ecology at the Asst/Assc level! Please pass along this opportunity to anyone you know who may be interested. I'm on the search committee and happy to answer questions. 🍄 www.ugajobsearch.com/postings/445...
ugajobsearch.com
Assistant or Associate Professor - Fungal Biology/Mycology
The Department of Plant Pathology in the College of Agricultural and Environmental Sciences (CAES) at the University of Georgia is recruiting for the position of Assistant or Associate Professor in Fu...
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Francis M. Martin @fmartin54.bsky.social · 15/08/2025
Early germline sequestration in a basidiomycete fungus | Science www.science.org/doi/10.1126/...
science.org
Early germline sequestration in a basidiomycete fungus
In sexual organisms, inheritance of new mutations is highly dependent on the timing of germline definition. Here, we used the fairy ring–forming fungus Marasmius oreades to challenge the general assum...
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Abigail Lind @abigailllind.bsky.social · 21/07/2025
Excited to see my review on gut protist ecology and evolution out in Current Opinions! This is part of a special issue on evolutionary genetics which has a lot of great work. Check it out here - authors.elsevier.com/sd/article/S...
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Alvaro Sanchez @asanchezlab.bsky.social · 16/07/2025
How may theoretical ecology & evolutionary theory push microbiology forward? At Environmental Microbiology, I am commissioning a series of Perspectives exploring that question. Excited to share them in the 🧵 below The series is open, so do get in touch if you'd like to propose a new contribution!
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Alex Crits-Christoph @acritschristoph.bsky.social · 04/06/2025
A great blog post by @math-rachel.bsky.social on this preprint describing failures of an ML approach for gene annotation: rachel.fast.ai/posts/2025-0... www.biorxiv.org/content/10.1... "how challenging (or even impossible) it can be to evaluate AI claims in work outside our own area of expertise"
rachel.fast.ai
Rachel Thomas, PhD - Deep learning gets the glory, deep fact checking gets ignored
an AI researcher going back to school for immunology
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Morten Kam Dahl Dueholm @mkddueholm.bsky.social · 02/06/2025
Global Metagenomics Reveals Hidden Protist Diversity. #ProtistsonSky www.biorxiv.org/content/10.1...
biorxiv.org
Global Metagenomics Reveals Hidden Protist Diversity
Protists, defined as unicellular eukaryotes distinct from animals, plants, and fungi, are a polyphyletic group that predominates the eukaryotic tree of life, exhibiting significant phylogenetic divers...
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Nicolas Alexandre @nicmalexandre.bsky.social · 21/05/2025
🚨New paper alert!🚨 We show that hummingbird beaks have changed in shape & size since around WWII, driven by the rise of commercialized feeders! 🧵 📄 Paper: dx.doi.org/10.1111/gcb.... #ornithology #evolution #GlobalChangeBiology
dx.doi.org
Supplemental Feeding as a Driver of Population Expansion and Morphological Change in Anna's Hummingbirds
Bird beaks are highly adaptable, with the potential to undergo rapid morphological shifts in response to environmental change such as climatic variation or food availability. Anna's Hummingbirds (Cal...
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Shashank Shekhar lab @sshekhr.bsky.social · 02/04/2025
📢Excited to share our new paper in Nature Physics @naturephysics.bsky.social: Cooperative hydrodynamics accompany multicellular-like colonial organization in the unicellular Stentor! How do single-celled organisms benefit from teamwork? Let’s dive in! #Multicellularity nature.com/articles/s41...?
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Alain Goossens @alaingoossenspsb.bsky.social · 03/04/2025
Recruitment time! You're a junior postdoc and want to discover and produce bioactive fungal metabolites that are involved in the chemical warfare between fungi and plants? Then apply here! jobs.vib.be/j/108923/pos...
jobs.vib.be
Postdoctoral Researcher - VIB
OverviewThe group of Specialized Metabolism, led by Prof. Alain Goossens at the VIB-UGent Center for Plant Systems Biology, and the metabolic engineering researc
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Cameron Thrash @jcamthrash.bsky.social · 27/03/2025
Anaerobic protist survival in microcosms is dependent on microbiome metabolic function www.biorxiv.org/content/10.1... #jcampubs
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Dave Baltrus 🦦 @surtlab.bsky.social · 15/03/2025
In my 25 years since high school I’ve seen 1. HIV/AIDS go from death sentence to manageable with drugs 2. Cystic fibrosis go from pretty much an extended death sentence to manageable with drugs 3. Sickle cell go from a horrible disease to (almost maybe) cured by gene therapy Simply incredible
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Fabien Burki @fburki.bsky.social · 13/03/2025
Good discussion, which applies to the rest of the tree of life as well
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Masaru Nobu @masarunobu.bsky.social · 27/02/2025
New isolates from eukaryote's closest archaeal relative: ‘Hodarchaeales’!! Syntrophic microaerotolerant peptide-degrading anaerobic archaea w/ simple cell structure & protrusions. Features conserved across the phylum provide new insight into our ancestor’s biology! www.biorxiv.org/content/10.1...
biorxiv.org
Eukaryotes' closest relatives are internally simple syntrophic archaea
Eukaryotes are theorized to have originated from an archaeal phylum Promethearchaeota (formerly 'Asgard' archaea)1,2. The first cultured representatives revealed valuable insight3,4 but are distantly ...
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Annika Barber @annikabarber.bsky.social · 24/02/2025
Wondering if your study section cancelled? I update this sheet daily. As of today, 56/124 study sections that should have met since Jan 2, 2025 have "not met as scheduled." docs.google.com/spreadsheets...
docs.google.com
2025 Study section tracking
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Sean Gibbons 🦠💩 @gibbological.bsky.social · 18/02/2025
Introducing "Metagenomic Estimation of Dietary Intake", or "MEDI": a data-driven approach to estimating dietary and nutritional intake from stool DNA 💩 - 🍌🥦🐟🥩📈 See @cdiener.com's excellent thread below. We are really proud of this work, and we hope it is useful to the scientific community.
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Louis-Marie Bobay @lbobay.bsky.social · 30/01/2025
I am a little late, but I am very happy to see this work published. Congrats to @ellistorrance.bsky.social for all the hard work on her last chapter! doi.org/10.1093/nar/...
doi.org
Homologous recombination shapes the architecture and evolution of bacterial genomes
Abstract. Homologous recombination is a key evolutionary force that varies considerably across bacterial species. However, how the landscape of homologous
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Nature Microbiology @natmicrobiol.nature.com · 07/01/2025
OUT NOW - Gut microbiome signatures of vegan, vegetarian and omnivore diets and associated health outcomes across 21,561 individuals @cibiocm.bsky.social @fackelmeister.bsky.social www.nature.com/articles/s41...
nature.com
Gut microbiome signatures of vegan, vegetarian and omnivore diets and associated health outcomes across 21,561 individuals - Nature Microbiology
Using 21,561 individuals, the authors present a cross-sectional study of how gut microbiome signatures are associated with dietary intake patterns and with host health outcomes.
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STCmicrobeblog @stcmicrobeblog.bsky.social · 21/11/2024
I did not know this and it blows my mind. it seems that tRNAs, like US $, are accepted as currency *everywhere*, no matter whose wallet their genes are in and how they got there 😳 #MicroSky #ProtistsOnSky #FungiFriends
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Ben Vezina @bananabenana.bsky.social · 21/11/2024
(1/6) Our new short paper on incidental bacterial domestication between patient isolation and creation of frozen stock. Geno/phenotype changes are obscured by rich media and more prevalent than we previously thought. #MicroSky
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Abigail Lind @abigailllind.bsky.social · 20/11/2024
"There's a maximum likelihood I'm doing phylogenetics wrong" floats through my mind unbidden at least once a day
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Vaughn Cooper @vscooper.micropopbio.org · 13/09/2023
Good lord, the FoldSeek clustering of all AlphaFold structures is incredible. Just stunning. Vastly expands the taxonomic breadth of microbes that encode homologous structures that we care about. Paper here: www.nature.com/articles/s41... and website to search here: cluster.foldseek.com
cluster.foldseek.com
AFDB Clusters
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Alex Crits-Christoph @acritschristoph.bsky.social · 08/09/2023
www.cell.com/cell/fulltex...
cell.com
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and...
Discovery and exploitation of natural competence in Patescibacteria enables visualization of the bacterial epibiont lifecycle and dissection of its genetic underpinnings.
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