Reposted by Dave Baltrus 🦦Coach Finstock @coachfinstock.bsky.social · 1hI'm being silly here but the point still stands that every single person using AI is apparently oblivious to the fact that somewhere, someone has their thumb on the scale to feed you shit. 38312
Reposted by Dave Baltrus 🦦Benjamin @benjaminschneider.ch · 4hWerner Herzog will be the last human being whose next word no language model can predict 7331100
Dave Baltrus 🦦 @surtlab.bsky.social · 2hThey’re both bangers…but you gotta go with “I learned it by watching you” 340
Reposted by Dave Baltrus 🦦JD (by way of Blacksky) @jdot.blacksky.team · 16hBoosting in light of the discourse surrounding Cornell University. 111863
Reposted by Dave Baltrus 🦦Matt Olm @mattolm.bsky.social · 23hThis is an interesting paper! Starting with a really big screen to look for GPCR activation by microbes, and ending with a convincing story by which microbes make acetylcholine in the gut to promote IgA production, ultimately leading to better colonization. www.nature.com/articles/s41...nature.comCommensal-derived acetylcholine enhances mucosal immune education - NatureA diet–microbiome–host axis strengthens mucosal immune defences and reinforces host–microbiota mutualism. 1198
Reposted by Dave Baltrus 🦦mtsw @mtsw.bsky.social · 18hI feel like if AI wants to be in the business of offering medical opinions, then AI companies need to be in the "getting sued for medical malpractice" business too 16963195
Reposted by Dave Baltrus 🦦Vivek Mutalik @vivekmutalik.bsky.social · 23hIn our brand new 🥳 review, @hemaa-selvakumar.bsky.social & team pull a scattered literature in phage biology into a coherent framework for scaling up to engineering complex communities. We poured our hearts into this to share challenges & future opportunities for the nextGen! 22811
Reposted by Dave Baltrus 🦦Will Ratcliff @wcratcliff.bsky.social · 28/09/2026New paper out with @kaylastoy.bsky.social: academic.oup.com/evlett/advan... 812155
Reposted by Dave Baltrus 🦦Dave Jorgenson @davejorgenson.bsky.social · 26/09/2026🎃 Pumpkin Spice GLP-1 season 🍂 716217
Reposted by Dave Baltrus 🦦Jesse Shapiro @bjesseshapiro.bsky.social · 29/09/2026Our latest, spearheaded by the truly indefatigable @emderrick.bsky.social in which we search for selective sweeps in nature and genetic targets of selection within a species in the context of a diverse background community @isme-microbes.bsky.social doi.org/10.1093/isme... 🧵 1/ndoi.orgValidate User 43822
Reposted by Dave Baltrus 🦦c0nc0rdance @c0nc0rdance.bsky.social · 27/09/2026I'll save you the click-through: A lab at University of Copenhagen had been feeding draft manuscripts & data into "Claude Science" & then Anthropic announces a discovery that this lab made a year ago but hasn't published yet. It's plausible that Claude found the same signatures independently... 7253110
Reposted by Dave Baltrus 🦦Nicholas Grossman @nicholasgrossman.bsky.social · 27/09/2026What's a good way to visualize how the AI boom/bubble is propping up the economy? Ah, thanks. 12706189
Reposted by Dave Baltrus 🦦Alex Gibney @alexgibneyfilm.bsky.social · 24/09/2026The trailer for my new film, "Musk," has just been released. 7935321339
Reposted by Dave Baltrus 🦦Neil Lewis, Jr. @neillewisjr.bsky.social · 26/09/2026Random Saturday thought: in either middle or high school my school brought in entrepreneurs to talk to us about starting businesses. One of the things they emphasized was the importance of a good name/brand. Anyway, it's funny now that a multi-billion dollar company is called Hugging Face 🤗. 4282
Reposted by Dave Baltrus 🦦BWJones @bwjones.bsky.social · 25/09/2026Science peeps: Looks like SciENcv updated the digital certificate used to sign Biosketch and Current & Pending documents without notification. The old certificate expires Saturday, September 26, 2026. SciENcv docs before that date may fail validation in eRA Commons delaying or blocking submission. 77471
Reposted by Dave Baltrus 🦦Nature Microbiology @natmicrobiol.nature.com · 25/09/2026Out Now! Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ #MicroSkygo.nature.comSystematic mapping of bacteriophage gene essentiality with HIDEN-SEQNature Microbiology, Published online: 25 September 2026; doi:10.1038/s41564-026-02455-8HIDEN-SEQ (hidden Acr-enabled transposon-insertion sequencing) is a transposon-insertion sequencing method for phages that systematically links their genes to selectable phenotypes. 0136
Reposted by Dave Baltrus 🦦Maryn McKenna @marynmck.bsky.social · 25/09/2026If you were transfixed by THE HOT ZONE when you were young, or then read SPILLOVER and trusted it, then as a career scary diseases reporter, I urge you to read this thread. Science moves on. People discover fresh stuff. The work careers were built on becomes outdated. Be open to the new. Please. 414062
Dave Baltrus 🦦 @surtlab.bsky.social · 25/09/2026Do I use Claude to create pipelines for bioinformatics analyses, yes, yes I do…and it works pretty well so long as you keep vetting inputs and outputs manually But Claude is very very stupid when it comes to interpreting biological signals 1150
Dave Baltrus 🦦 @surtlab.bsky.social · 25/09/2026“We thank the reviewer for their comments! We have rewritten this section to provide concrete evidence * of biological function” *evidence is that Claude says so 263
Reposted by Dave Baltrus 🦦Vivek Mutalik @vivekmutalik.bsky.social · 25/09/2026Mapping structural constraints and adaptive potential in a capsule-degrading phage tailspike protein | Science Advances www.science.org/doi/10.1126/... #phageskyscience.orgMapping structural constraints and adaptive potential in a capsule-degrading phage tailspike proteinBacteriophage tailspike proteins (TSPs) degrade bacterial capsules to enable infection, yet the molecular determinants of their function and host range remain unclear. We applied deep mutational scann... 0185
Reposted by Dave Baltrus 🦦Faine Greenwood @faineg.com · 25/09/2026Imagine if instead of regulating drone risks the normal way (which we did), we instead paid weird bloggers lots of money to worry about superintelligent dogs sprouting thumbs and using drones to kill us. This is pretty much how the US is approaching AI risks and regulations. My latest:little-flying-robots.ghost.ioWhy We Can't Let Enormous Weirdos Regulate AIImagine if instead of regulating drones via the standard lengthy, boring, and bureaucratic process - which we did - we instead decided, in the name of fostering all-important American drone innovation... 25952276
Reposted by Dave Baltrus 🦦Heather Cherone @heathercherone.bsky.social · 24/09/20262023: White Sox lose 101 games 2024: White Sox lose 121 games 2025: White Sox lose 102 games 2026: 8518124
Reposted by Dave Baltrus 🦦Monteiro @monteiro.bsky.social · 24/09/2026Me, when the printer dialogue box says “looking for printer.” 2368
Reposted by Dave Baltrus 🦦Jennifer Biddle @jenbiddle.bsky.social · 24/09/2026One of our students is facing a medical crisis so I set up a meal train. When I got into the system, it told me I still had access to when @patschloss.bsky.social set one up for @surtlab.bsky.social - and I am reminded that nice people exist! 161
Reposted by Dave Baltrus 🦦Maya Voichek @mayavoichek.bsky.social · 24/09/2026Super excited to share my postdoctoral work at @imbavienna.bsky.social @viennabiocenter.bsky.social - We discovered that some retrotransposons, or "jumping genes" 🧬, are able to spread from cell to cell via a new viral infectivity route. A short thread: 🧵👇 (1/7) 20256143
Dave Baltrus 🦦 @surtlab.bsky.social · 23/09/2026Just texted my wife this picture with the caption “found my next tattoo” She has responded by questioning what I do at work 3140
Reposted by Dave Baltrus 🦦Blue Heron Farm @blueheronfarm.bsky.social · 23/09/2026No. That's too much orange. 315018
Reposted by Dave Baltrus 🦦Colin Carlson @colincarlson.bsky.social · 23/09/2026What's behind this tidal wave of epidemics? In the largest study ever conducted on emerging infectious diseases, we show that the popular explanation - "our relationship with nature is out of balance" - doesn't hold up. Out now in Nature, after half a decade of work: www.nature.com/articles/s41...nature.comThe anthropogenic fingerprint on emerging infectious diseases - NatureEmerging infectious disease outbreak risks are ubiquitous worldwide, and highest in landscapes where people, livestock and fragmented natural ecosystems coexist, but detection and data ... 8553276
Reposted by Dave Baltrus 🦦Terry McGlynn @hormiga.bsky.social · 23/09/2026Been hearing this a lot lately and I think it needs to catch on: “Trust is infrastructure.” 193
Reposted by Dave Baltrus 🦦Drug Monkey @drugmonkey.bsky.social · 23/09/2026Construction started on a new science building next to the one I work in. Big pit dug….then Trump threatened IDC cuts. It is now a big pit with sloping sides covered in soil retention planting. 021
Dave Baltrus 🦦 @surtlab.bsky.social · 23/09/2026Addendum: Building next to mine in heart of campus is number 1 building on campus needing extensive renovation. There exist architect paid for plans to refurb and renew However, no money for renovation, but also no money to demolish it…so they’re just going to board it up for foreseeable future 122
Dave Baltrus 🦦 @surtlab.bsky.social · 23/09/2026My Uni has had serious money issues for past 5+ years. the kind that mean my Dept has lost 14 faculty in that time and next replacement hire scheduled for 2030 (not joking) The University President just sent an email that he’s hiring a new “Special Advisor to the President” to help solve problem 13428
Reposted by Dave Baltrus 🦦Richard Lenski @relenski.bsky.social · 22/09/2026"Philosophy of Biology: The power of theory in the life sciences" elifesciences.org/articles/112... @zdblount.bsky.social shared this thought-provoking paper with the lab group.elifesciences.orgPhilosophy of Biology: The power of theory in the life sciencesTheory can help address cell and molecular biology’s major challenges, particularly those arising from large omics datasets. 110346
Reposted by Dave Baltrus 🦦Taniel @taniel.bsky.social · 22/09/2026A post that’s so eye-opening because this is exactly what liberals will say is GOP distraction tactics, almost as a parody— and here it really is what Gaetz is saying unironically as his GOP message. 2394752974
Dave Baltrus 🦦 @surtlab.bsky.social · 22/09/2026Guess who is now the president of our local Little League? (It me, I’m the president, I get the parent emails now) 290
Reposted by Dave Baltrus 🦦Moi Expósito-Alonso (MOILAB) @mexpositoalonso.bsky.social · 21/09/2026 📣 We are looking for a PhD student in 2027! Interested in studying rapid evolutionary dynamics of species in changing climates? Apply to the MOI LAB by Nov 19! Flyer below & tinyurl.com/flyerphdmoilab @ucberkeleyofficial.bsky.social @innovativegenomics.bsky.social @hhmi-science.bsky.socialtinyurl.com2027_PhD_RapidEvolutionGenomicsEcology-MoiLab_Berkeley-HHMIPhD positions: Rapid evolutionary genomics in plants Moi Exposito-Alonso Lab — www.moilab.science Assistant Professor, Freeman Hrabowski Scholar HHMI · Department of Integrative Biology · Innovative G... 03447
Reposted by Dave Baltrus 🦦Bryan Blessed @bryb.bsky.social · 21/09/2026This picture of the Pope at his 40th birthday party is everything to me.x 65250601
Reposted by Dave Baltrus 🦦David Bikard @dbikard.bsky.social · 21/09/2026New paper from the lab, out in Nature Microbiology. We ran CRISPRi screens to ask what genes E. coli needs in order to live in a gut and what this can tell us about the gut environment itself. doi.org/10.1038/s41564-026-02471-8 311154
Dave Baltrus 🦦 @surtlab.bsky.social · 21/09/2026Like you just put on the glasses in the movie “They Live” 031
Reposted by Dave Baltrus 🦦Willem van Schaik @wvschaik.bsky.social · 20/09/2026Brilliant paper by the labs of @epcrocha.bsky.social @jrpenades.bsky.social 'Mobile genetic elements drive a plasmid fusion and deletion lifecycle shaping evolution and antimicrobial resistance' www.nature.com/articles/s41...nature.comMobile genetic elements drive a plasmid fusion and deletion lifecycle shaping evolution and antimicrobial resistance - Nature CommunicationsPlasmids drive bacterial adaptation, but how their diversity arises has remained unclear. Here, they show that in Staphylococcus aureus, mobile genetic elements repeatedly fuse and delete plasmids, re... 23916
Reposted by Dave Baltrus 🦦Zamin Iqbal @zaminiqbal.bsky.social · 20/09/2026Yes! Wonderful! also , can't resist, we proposed the same model (we called it fusion- fragmentation) in our paper on the Murray collection, where we look at how those plasmids end up in fusions, or fragmented. www.science.org/doi/10.1126/...science.orgPre- and postantibiotic epoch: The historical spread of antimicrobial resistancePlasmids are now the primary vectors of antimicrobial resistance, but our understanding of how human industrialization of antibiotics influenced their evolution is limited by a paucity of data predati... 12510
Reposted by Dave Baltrus 🦦Don Moynihan @donmoyn.bsky.social · 20/09/2026Vought's goals are a) to reduce scientific funding generally, and b) especially to universities. Political appointees within agencies can already block spending. This would centralize this power in the White House. By requiring unanimity, it would ensure far less money will be spent on science. 724866
Dave Baltrus 🦦 @surtlab.bsky.social · 20/09/2026Ran is correct about this IMO…. There’s use and there’s abuse and there’s laziness with regard to AI and academia. And there’s no one size all answer that works for everything. I do disagree with the footnote but acknowledge old Twitter has been better for science discussions. 3103
Reposted by Dave Baltrus 🦦Ran Blekhman @blekhman.bsky.social · 20/09/2026The AI Discourse in Academia is Toxic. It Doesn’t have to be. My new post: blekhman.substack.com/p/the-ai-dis...blekhman.substack.comThe AI Discourse in Academia is Toxic. It Doesn’t have to be.You are allowed to have a nuanced opinion about AI 7199