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Stefan Rothenburg

@stefanrothenburg.bsky.social
1.2K followers 540 following 89 posts

Virology, Host-Virus Interactions and Evolution, Poxviruses, Arboviruses, PKR, RNase L, Translational Regulation University of California, Davis health.ucdavis.edu/medmicro/faculty…

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Reposted by Stefan Rothenburg
Jonathan Eisen @phylogenomics.bsky.social · 06/10/2026
CA prop 38 is a scam - vote NO. For example see: This CA proposition will send $4 billion to a single nonprofit. Who’s behind it? calmatters.org/politics/ele...
calmatters.org
Is this proposition a $4 billion giveaway to a billionaire’s LA research center?
Proposition 38 will award $4 billion to one unnamed research center. Under the very specific criteria, only one center seemingly qualifies.
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Michael Way @drmichaelway.bsky.social · 01/10/2026
If you are interested in microglia and actin cytoskeleton/Arp2/3 check out the project from my lab with Josef Kittler at UCL
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Stefan Rothenburg @stefanrothenburg.bsky.social · 25/09/2026
(1/3) Fresh from the press. Our new review on: Insights into molecular mechanisms of #poxvirus evolution and host range through studies of poxvirus inhibitors of #protein_kinase_R | Journal of Virology journals.asm.org/doi/10.1128/...
journals.asm.org
Insights into molecular mechanisms of poxvirus evolution and host range through studies of poxvirus inhibitors of protein kinase R | Journal of Virology
Pattern recognition receptors (PRRs) recognize molecular patterns shared by multiple pathogens and constitute a first line of defense against invading pathogens. One of the first identified PRRs is pr...
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The Reds, Pinks & Purples @glenndonaldson.bsky.social · 25/09/2026
you can stream the whole 29 min EP/mini-LP now everywhere... more of a floating conceptual one, instrumentals and songs with vocals blending together, tape available from FIRE USA or UK stores or in the UK at theredspinksandpurples.bandcamp.com/album/true-l...
theredspinksandpurples.bandcamp.com
True Love Daydream EP, by The Reds, Pinks & Purples
6 track album
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Stefan Rothenburg @stefanrothenburg.bsky.social · 23/09/2026
www.nature.com/articles/d41...
nature.com
Genome project opens the next chapter for studying bat evolution
A landmark collection of bat genomes reveals fresh clues about the evolution of one of the world’s most unusual groups of mammals.
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Stefan Rothenburg @stefanrothenburg.bsky.social · 23/09/2026
www.nature.com/articles/s41...
nature.com
Reference genomes and fossils revise bat family phylogeny and biogeography - Nature
An updated phylogeny of bats is presented, based on new genome assemblies and many ancient fossils and including all known bat families.
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Stefan Rothenburg @stefanrothenburg.bsky.social · 23/09/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Localized SARS-CoV-2 Infection Triggers a Tissue-Wide Antiviral Response and Functional Impairment of Olfactory Sensory Neurons
Olfactory dysfunction is a hallmark of COVID-19, yet the mechanisms by which severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection causes widespread sensory impairment remain incomple...
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Reposted by Stefan Rothenburg
Ken Stedman @xtremevirusprof.bsky.social · 22/09/2026
Congratulations to @oliverio.bsky.social and @hbrappap.bsky.social for their Cell paper on extremophilic amoeba from Lassen Volcanic National Park. So glad to have been able to help with this work! authors.elsevier.com/sd/article/S...
authors.elsevier.com
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Steve Baker @sfbkr.bsky.social · 15/09/2026
Our musings on one of the cell's most radical compartments. Most mitochondrial proteins are nuclear encoded, but it's a long path from gene expression to arrival at the powerhouse. Stressors like viral infection can relocalize mitochondrial proteins to impact defense journals.asm.org/doi/10.1128/...
journals.asm.org
The factory enters the fray: how mitochondrial protein trafficking shapes the host response to infection | Journal of Virology
Mitochondrial protein trafficking sits at the intersection of metabolism and immunity. Redistribution of host and viral proteins to and from the mitochondria underlies a wide range of infection outcom...
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Chuan Ku @chuanku.bsky.social · 15/09/2026
Our new work @fmschu.bsky.social: Giant viruses are widespread environmental pathogens infecting diverse eukaryotes, but most GVs remain uncultured with hosts unknown. GVHoP provides hierarchy-aware host prediction and identifies potential host-determining factors. www.biorxiv.org/content/10.6...
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Aris Katzourakis @ariskatzourakis.bsky.social · 15/09/2026
Wrote up a piece for @theconversation.com on whether ancient smallpox can be brought back from 500 year old smallpox DNA (I wouldn't worry about that) and what the smallpox samples from the Chilean burial sites show us. theconversation.com/can-an-ancie...
theconversation.com
Can an ancient virus be brought back to life? What 500-year-old smallpox DNA reveals
Smallpox DNA from two people buried in Chile reveals the virus’s arrival through European colonisation – but recreating it would require deliberate laboratory work.
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Thelonevirologist @thelonevirologist.bsky.social · 14/09/2026
The organization and dynamics of viral factories journals.asm.org/doi/10.1128/...
journals.asm.org
The organization and dynamics of viral factories | Journal of Virology
Viruses are “nonliving” microscopic infection machines with unique mechanisms for hijacking host cell pathways to produce viral progeny and often induce cell death. Viral factories (VFs) are a prime e...
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Reposted by Stefan Rothenburg
Thelonevirologist @thelonevirologist.bsky.social · 14/09/2026
African swine fever virus A151R protein antagonizes the antiviral activity of barrier-to-autointegration factor (BAF) by targeting its dsDNA-binding activity journals.asm.org/doi/10.1128/...
journals.asm.org
African swine fever virus A151R protein antagonizes the antiviral activity of barrier-to-autointegration factor (BAF) by targeting its dsDNA-binding activity | Journal of Virology
DNA viruses replicating in the cytoplasm must overcome host intrinsic defenses to ensure productive replication, yet the mechanisms underlying their antagonism of the DNA-binding antiviral factor BAF remain incompletely understood. Here, we identify African swine fever virus (ASFV) A151R as a novel viral regulator that disables BAF by targeting its double-stranded DNA-binding interface rather than altering its phosphorylation state. We demonstrate that A151R impairs BAF DNA binding, disrupts its dimerization, and promotes viral DNA accumulation and progeny production in a BAF-dependent manner. Importantly, this activity requires A151R-BAF interaction and is independent of BAF phosphorylation status. Our findings reveal a previously unrecognized strategy employed by ASFV to neutralize host DNA-binding restriction factors and expand the molecular framework of BAF-mediated antiviral defense.
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Reposted by Stefan Rothenburg
Priya Shah @whatthefugacity.bsky.social · 03/09/2026
Feeling this very much after sending a draft to collaborators. You’ll get there, babe. As I tell my trainees, a shitty draft is better than no draft. You can’t edit a draft that doesn’t exist.
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Reposted by Stefan Rothenburg
CalMatters @calmatters.org · 02/09/2026
A California science bond measure to counter the Trump administration’s research cuts is back from the dead after state lawmakers and Gov. Gavin Newsom reached a deal last week to place the $7.5 billion request to voters on the March 2028 ballot. cal.news/4h5xdaU 📸 Ariana Drehsler
A student walks towards the Biomedical Sciences building at the University of California, San Diego in San Diego on July 26, 2022. Photo by Ariana Drehsler for CalMatters
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Reposted by Stefan Rothenburg
virologyunmasked.bsky.social @virologyunmasked.bsky.social · 01/09/2026
virologyunmasked.com/michael-emerman/ This month's titan of virology and vaccinology. Dr. Michael Emerman. Dr. Emerman is an HIV researcher who helped unlock its molecular mysterious. He is also a pioneer in the field of 'plaleovirology' and a mentor to over 100 students! @memerman.bsky.social
virologyunmasked.com
Michael Emerman
Dr. Michael Emerman “You align priorities to favor the trainees (so) that what is good for the trainees will end up being good for the lab” Emerman on successful mentoring, Virology Unm…
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Stefan Rothenburg @stefanrothenburg.bsky.social · 27/08/2026
Insights into longevity and virus-driven adaptation from Myotis bat genomes. This includes a detailed analysis of protein kinase R (PKR) duplications in Myotis bats. doi.org/10.1038/s415...
doi.org
Insights into longevity and virus-driven adaptation from Myotis bat genomes - Nature
Comparative and functional analyses of Myotis bats uncover unique patterns of adaptation in virus-interacting proteins and longevity-associated pathways, linking two hallmarks of bat biology.
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Stefan Rothenburg @stefanrothenburg.bsky.social · 25/08/2026
Wow, this is a huge story. So many authors have used the wrong antibodies. I wonder how many other studies have confused other antibodies with similar names. This should lead to many investigations, expressions of concern, and potentially retractions.
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Stefan Rothenburg @stefanrothenburg.bsky.social · 21/08/2026
Monkeypox Virus Surveillance — United States, 2024–2025 www.cdc.gov/mmwr/volumes... 'Persistent low-level transmission of clade IIb MPXV in the United States suggests a likely transition toward endemic circulation. "
cdc.gov
Monkeypox Virus Surveillance
This report describes cases of monkeypox virus infection reported during 2024–2025.
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Reposted by Stefan Rothenburg
Harmit Singh Malik @harmitmalik.bsky.social · 21/08/2026
Here's a quick and cool cheat-sheet on all the competitions, eligibility, deadlines (just realizing the dates I wrote above were the opening dates, not the deadlines: please consult the links I posted for the correct dates and more details of why you should absolutely apply)
HHMI Program details
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Steve Baker @sfbkr.bsky.social · 20/08/2026
lab 2.0 in Chicago in search of a postdoc! Pursue virus-host interactions, post-translational modifications, and RNA splicing. Excellent in oral and written communication, lab and project management, and an ability to supervise and mentor trainees. sfbkrlab.org www.careers.luc.edu/postings/35620
sfbkrlab.org
sfbkr lab
We study how host alternative splicing shapes the outcome of influenza virus infection — from cryptic isoforms that antagonize the polymerase to the ANP32 proteins that support it.
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Lisa Baik 🦟 @mosquitolady.bsky.social · 20/08/2026
Today is the #WorldMosquitoDay 🦟 And I’m happy to get bitten by them so that everyone else will not have to, one day! 🥴 Not only are mosquito bites annoying, it can spread deadly pathogens. Let’s keep funding scientific research so we can continue to #fightthebite 💪💪💪❌🦟
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Kylee Morrison @kylee-morrison.bsky.social · 13/08/2026
ANNOUNCEMENT! My lab at Western Michigan University will be recruiting at least one graduate student, but no more than 2, to begin in Fall of 2027. Please share with any prospective students interested in host-virus interactions! Link to apply below 😊🦠🧬 docs.google.com/forms/d/e/1F...
docs.google.com
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Reposted by Stefan Rothenburg
Natalia Sampaio @drnatsampaio.bsky.social · 11/08/2026
We set out to map what #RNA binds to immune receptor #MDA5 during #virus infection. Our findings were unexpected: rather than viral, it was host RNA! Excited (translate: frankly, knackered) to share our paper in @natureportfolio.nature.com Nature Immunology! 🔗 www.nature.com/articles/s41... 🧵👇
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Sam Díaz-Muñoz (they / ella) @sociovirology.bsky.social · 05/08/2026
Hi Everyone! I will be broadcasting live from the Social Lives of Viruses 2026 conference @zoology.ubc.ca @ubcbiodiversity.bsky.social in beautiful Vancouver BC, organized by @asherleeks.bsky.social and myself with the support of Canadian Institutes of Health Research and @moorefound.bsky.social.
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American Society for Virology @amersocvirology.bsky.social · 23/07/2026
The ASV VIRO committee is pleased to host Temple Grandin for a workshop on neurodiversity in science. Please note a small correction from the official program: registration is NOT required and dinner will be served! #asv2026
Information on Temple Grandin workshop at ASV 2026
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Stefan Rothenburg @stefanrothenburg.bsky.social · 23/07/2026
pubmed.ncbi.nlm.nih.gov/42398761/ Asthma Control Before and After Changing Gas Stoves to Electric Stoves www.sciencedirect.com/science/arti...
pubmed.ncbi.nlm.nih.gov
Asthma Control Before and After Changing Gas Stoves to Electric Stoves - PubMed
Asthma control appeared to improve in the follow-up period after electric stove installation compared with the baseline period with a gas stove. People with poorly controlled asthma may consider trans...
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Stefan Rothenburg @stefanrothenburg.bsky.social · 17/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
RNAquarium: an archive-scale atlas of zebrafish gene expression coupled with pan-taxonomic profiling reveals diverse viral drivers of transcriptomic states
Zebrafish RNA-seq studies span diverse developmental, physiological, and disease contexts, yet most analyses remain confined to individual experiments and disregard the non-zebrafish component of the ...
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Stefan Rothenburg @stefanrothenburg.bsky.social · 29/06/2026
Huibin Yu (former graduate student in my lab) and Bernie Moss developed a promising new strategy to boost neutralizing antibodies against poxviruses. dlvr.it/TSz9g5 #MicroSky go.nature.com/3QcjuEE Free view-only full text: rdcu.be/fnxGh
dlvr.it
Immunogenicity of poxvirus A16/G9 entry–fusion subcomplex and its restriction by A56/K2 protein informs vaccine design - Nature Microbiology
The poxvirus A16/G9 entry protein is shown to be a potent cross-protective antigen for incorporation into recombinant vaccines, but its immunogenicity in current live vaccines is restricted by the vir...
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Reposted by Stefan Rothenburg
Thelonevirologist @thelonevirologist.bsky.social · 24/06/2026
Double trouble: how co- and superinfections shape viral dynamics and host responses journals.asm.org/doi/10.1128/...
journals.asm.org
Double trouble: how co- and superinfections shape viral dynamics and host responses | Journal of Virology
Infection by multiple viruses is common in nature and can occur either concurrently or sequentially within the same host or cell. While coinfection refers to the simultaneous infection of an individua...
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Alex Lercher @alercher.bsky.social · 18/06/2026
Thank you for the highlight! @rockefeller.edu
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hanckslab.bsky.social @hanckslab.bsky.social · 19/05/2026
The plot thickens...our thoughts on #mitochondria and metabolism during infection. TL;DR, Maybe sensing of mito. dysfunction evolved as an important signal to cue progression of immune states. @asm.org #mBio journals.asm.org/doi/10.1128/...
journals.asm.org
mGem: More than building blocks? Mitochondrial metabolism, viruses, and the host response to infection | mBio
Co-option of mitochondria is generally accepted as a consequence of endosymbiosis of an ancestral α-proteobacterium due to a perceived metabolic advantage provided by bioenergetic and biosynthetic act...
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Reposted by Stefan Rothenburg
Marc Stadler @ms-fungi.bsky.social · 12/05/2026
A highlight that arose during our @MSCAction collaborations (@Mycobiomics & #GoMyTri) with BIOTEC/Thailand was recently published by SIM. Hypocrealean insect fungi are cool! It is available at zenodo.org/records/2013... See for yourself! Congrats to Jennifer Luangsa-ard & her fantastic team!
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Craig Kaplan @triggerloop.bsky.social · 11/05/2026
Really important preprint from @mcmanuslabrna.bsky.social @gemmaemay.bsky.social and should be read by anyone interested in IRES elements. More evidence that vast majority of endogenous elements nominated as IRES do not have expected activity in stringent, RNA based assays 1/
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Stefan Rothenburg @stefanrothenburg.bsky.social · 03/04/2026
Another report showing co-circulation of different monkeypox virus clades, making the scenario of co-infections with different caldes and potential recombinations leading to new phenotypes more likely. Important to keep/increase surveillance efforts and full genome sequencing. rdcu.be/fbCIB
rdcu.be
Evidence of monkeypox virus clade IIb lineage A.2.2 in the Republic of the Congo and co-circulation of clade Ia, Ib and clade IIb
Nature Medicine - Whole-genome phylogenetic analyses have identified a case of monkeypox virus clade IIb lineage in the Republic of the Congo and co-circulation of three clade lineages,...
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Andreas Bäumler @abaumler.bsky.social · 19/03/2026
Here we show that buildup of uremic toxins during CKD generates nitrate in the colon. Nitrate supports expansion of Enterobacteriaceae, turning them into a major source of uremic toxins. Inhibiting nitrate production (iNOS inhibition) mitigates disease progression. www.science.org/eprint/YGNMK...
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Andreas Bäumler @abaumler.bsky.social · 12/03/2026
On world kidney day, let’s remember that uremic toxins, metabolites derived from the gut microbiota, drive progression towards renal failure. Yet while the microbial origin of uremic toxins is undisputed, it is not clear whether gut dysbiosis contributes to disease. www.worldkidneyday.org
worldkidneyday.org
Homepage - World Kidney Day 2026
#WorldKidneyDay20YearsWorld Kidney Day 20th AnniversaryJoin the CelebrationWorld Kidney DayRaising awareness of theimportance of our kidneysWho we areWKD 2026 Scientific EditorialKidney Health for All...
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Sara R Heras @herassr.bsky.social · 05/03/2026
Our New paper in Nucleic Acids Research, in collaboration with @saramaciasrna.bdky.social! A new link between TEs, RNA regulation, innate immunity and 22qDS. Congrats to the authors,specially @anagazquezg.bsky.social academic.oup.com/nar/article/...
academic.oup.com
Validate User
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Stefan Rothenburg @stefanrothenburg.bsky.social · 12/02/2026
rdcu.be/e3IC6
rdcu.be
Transmission of MPXV from fire-footed rope squirrels to sooty mangabeys
Nature - An outbreak of MPXV in sooty mangabeys in Côte d’Ivoire was linked to MPXV-infected fire-footed rope squirrels, providing direct evidence of interspecies transmission and...
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Stefan Rothenburg @stefanrothenburg.bsky.social · 30/01/2026
www.youtube.com/watch?v=IKOW...
youtube.com
BILLY BRAGG - CITY OF HEROES
YouTube video by Billy Bragg
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Reposted by Stefan Rothenburg
Andreas Bäumler @abaumler.bsky.social · 29/01/2026
I just leaned that my former postdoc mentor, Fred Heffron, passed away last week. I have fond memories from my time in Portland. Fred was smart, funny, and gave us the freedom to develop our own ideas. I am indebted to him for getting my academic career started in the US. Thank you and R.I.P.
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Florian I. Schmidt lab @fischmidtlab.bsky.social · 21/01/2026
Ever wondered how you can specifically inhibit #AIM2 #inflammasomes? @y-m-tesfamariam.bsky.social generated inhibitory AIM2 #nanobodies to ‬dissect inflammasome responses to #poxvirus infections in human #PrimaryCells @unibonn.bsky.social @immunosens.bsky.social link.springer.com/article/10.1...
link.springer.com
Poxvirus dsDNA genomes differentially activate AIM2 or NLRP3 inflammasomes in human primary cells - The EMBO Journal
The innate immune system is known for its ability to recognize cytosolic DNA as evidence of infection, but detailed studies of this process have been mostly limited to mice and cell lines. To investig...
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Sam J Wilson @samjwilsonphd.bsky.social · 26/11/2025
Hi Bluesky! I’m a molecular virologist studying how innate immune defences restrict cross-species transmission and shape disease severity. I just joined, so reposts appreciated to help me reconnect with virology, immunology, and host–pathogen interaction folks. (whiteboard art from Zhuonan Li)
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Stefan Rothenburg @stefanrothenburg.bsky.social · 16/01/2026
Great structure of a poxvirus entry fusion complex! Cryo-EM structure of the vaccinia virus entry fusion complex reveals a multicomponent fusion machinery | Science Advances www.science.org/doi/10.1126/...
science.org
Cryo-EM structure of the vaccinia virus entry fusion complex reveals a multicomponent fusion machinery
Structure of vaccinia entry fusion complex reveals a unique multiprotein architecture for poxvirus entry.
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Emma Harding @emma-harding.bsky.social · 17/12/2025
Happy to share our new paper on retroviruses in amphibians - a labour of love for our team @unswbabs.bsky.social with Prof. Peter White. We explore 102 amphibian species to understand what type of retroviruses infect them and their evolution, highlights below 🧵 link.springer.com/article/10.1...
link.springer.com
Transcriptome mining reveals diversity and evolution of circulating and endogenous amphibian retroviruses - Retrovirology
Background The evolutionary history of retroviruses and their impact on vertebrate evolution remains poorly understood, particularly in non-mammalian hosts. In this study, we explore retroviruses asso...
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Stefan Rothenburg @stefanrothenburg.bsky.social · 02/12/2025
1/1 New publication from my lab further elucidated the molecular basis for the host and virus-specific inhibition of PKR. My previous graduate student, Chorong Park, and other lab members compared orthologous PKR inhibitors from vaccinia virus (K3L) and capripoxviruses (011). www.mdpi.com/3608128
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Stefan Rothenburg @stefanrothenburg.bsky.social · 20/11/2025
A novel antiviral role of ankyrin repeat and LEM domain-containing 2 (ANKLE2) in restricting vaccinia virus through barrier to autointegration factor (BAF) | Journal of Virology journals.asm.org/doi/10.1128/...
journals.asm.org
A novel antiviral role of ankyrin repeat and LEM domain-containing 2 (ANKLE2) in restricting vaccinia virus through barrier to autointegration factor (BAF) | Journal of Virology
Vaccinia virus relies on disabling host defenses to replicate efficiently, with the host DNA-binding protein BAF representing a key target for viral kinases. Here, we uncover ANKLE2 as a critical host...
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Stefan Rothenburg @stefanrothenburg.bsky.social · 16/10/2025
Now with the correct link: We reviewed the "Molecular Mechanisms of Poxvirus Evolution" We show that poxviruses have highly adaptable genomes, and are not sluggishly evolving, as often described. journals.asm.org/doi/10.1128/...
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Stefan Rothenburg @stefanrothenburg.bsky.social · 16/10/2025
We reviewed the "Molecular Mechanisms of Poxvirus Evolution" | mBio journals.asm.org/doi/10.1128/... We show that poxviruses have highly adaptable genomes, and are not sluggishly evolving, as often described.
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Stefan Rothenburg @stefanrothenburg.bsky.social · 16/10/2025
Locally acquired Mpox case from infection of the more virulent monkeypox virus clade I in California. No need to panic, but it's important to stay vigilant. We need a functional CDC. lbpost.com/news/health/...
lbpost.com
More severe strain of mpox reported in Long Beach — the 7th ever case in the U.S.
It's the first U.S. case reported in someone without recent international travel, health officials said.
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