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Nuria Quiles

@quilesnuria.bsky.social
176 followers 306 following 3 posts

Microbiologist and phage enthusiast. Researcher at UCH CEU University.

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Reposted by Nuria Quiles
Andreas Haag @andreashaag.bsky.social · 25/02/2026
📢 Funded PhD in molecular microbiology & phage biology How do bacterial stress responses control prophage activation and horizontal gene transfer? Join us at St Andrews to dissect Clp protease–mediated regulation in Staphylococcus aureus. Apply: www.findaphd.com/phds/project...
findaphd.com
Protease-Controlled Prophage Activation in Staphylococcus aureus: New Mechanisms Driving Antimicrobial Resistance and Virulence at University of St Andrews on FindAPhD.com
PhD Project - Protease-Controlled Prophage Activation in Staphylococcus aureus: New Mechanisms Driving Antimicrobial Resistance and Virulence at University of St Andrews, listed on FindAPhD.com
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Pedro Dorado-Morales @doradomoralesp.bsky.social · 16/02/2026
A short research stay in 2019 (back in the pre-COVID era) at José R. Penadés lab turned into the third chapter of my PhD and today it finally sees the light.
nature.com
Targeted elimination of Staphylococcus aureus mastitis infections with synthetic phage-based CRISPR-Cas delivery systems - npj Biofilms and Microbiomes
npj Biofilms and Microbiomes - Targeted elimination of Staphylococcus aureus mastitis infections with synthetic phage-based CRISPR-Cas delivery systems
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Thomas Ipoutcha @tomipou.bsky.social · 05/02/2026
On this fabulous day celebrating André Citroën's birthday 🥖🚗, I’m happy to share my main paper from my postdoc in @jrpenades.bsky.social Lab. If you want to hear about how plasmid evolution is driven by mobile genetic elements, please come and read this preprint! www.biorxiv.org/content/10.6...
biorxiv.org
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Asaf Levy @asaflevylab.bsky.social · 26/01/2026
A new paper from the lab on virus-like particles called eCISs www.nature.com/articles/s41... How bacteria evolved thousands of precision nanoinjectors? Some bacteria don’t secrete toxins — they inject them using phage-derived machines called extracellular contractile injection systems (eCISs).
nature.com
A comprehensive catalogue of receptor-binding domains in extracellular contractile injection systems - Nature Communications
Extracellular contractile injection systems (eCISs) are bacteriophage tail-derived toxin delivery complexes that are present in many prokaryotes. Here, the authors present an analysis of eCIS tail fib...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 03/01/2026
A prophage-encoded sRNA limits phage infection of adherent-invasive E. coli #PLoSPathogen from @prsecor.bsky.social journals.plos.org/plospathogen...
journals.plos.org
A prophage-encoded sRNA limits phage infection of adherent-invasive E. coli
Author summary Prophages—viral genomes integrated into bacterial chromosomes—are common in enteric bacteria and can profoundly influence bacterial physiology and ecological fitness. Here we show that ...
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emggroupucph.bsky.social @emggroupucph.bsky.social · 29/12/2025
[1/3] Is your favorite bacterial isolate hiding a surprise lytic virus with a VERY different lifestyle? Finally I can proudly say that our paper on persistent phages is out in Nature Microbiology. rdcu.be/eWJEp. Well done @peterdoug.bsky.social
rdcu.be
Persistent virulent phages exist across bacterial isolates
Nature Microbiology - The long-term existence of diverse virulent phages within cultures of Escherichia coli and others challenges the virulent–temperate dichotomy and points to non-canonical...
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Frank Santoriello @fsantoriello.bsky.social · 21/12/2025
The final form of my 2nd postdoc paper with the Bassler Lab! Turns out our favorite quorum-sensing phage isn’t a one-off, but rather a member of a globally dispersed family of phages that sense a universal autoinducer. #phagesky #microsky journals.asm.org/doi/10.1128/...
journals.asm.org
A family of linear plasmid phages that detect a quorum-sensing autoinducer exists in multiple bacterial species | mBio
The discovery of quorum-sensing responsive linear plasmid phages has transformed understanding of phage-bacterial interactions by demonstrating inter-domain chemical communication. To date, however, e...
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Sahar Melamed @saharmelamed.bsky.social · 19/12/2025
Do viruses use RNA to rewire bacteria? Yes! In our paper in @cp-molcell.bsky.social RIL-seq reveals interkingdom RNA interactions during λ infection. Phages don’t just encode proteins, they use small RNAs to hijack bacterial replication and fine-tune infection. #RNA #Phage doi.org/10.1016/j.mo...
cell.com
Phage-encoded small RNA hijacks host replication machinery to support the phage lytic cycle
Using RIL-seq, Silverman et al. map the RNA interactome of E. coli during phage lambda infection and uncover a conserved phage-encoded sRNA that activates host replication machinery. Their findings re...
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Alexander Harms @aharms485.bsky.social · 20/11/2025
🚨Preprint alert - this is a big one! We transfer the revolutionary power of TnSeq to bacteriophages. Our HIDEN-SEQ links the "dark matter" genes of your favorite phage to any selectable phenotype, guiding the path from fun observations to molecular mechanisms. A thread 1/8
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Emmanuele Severi @emmseveri.bsky.social · 14/10/2025
www.biorxiv.org/content/10.1... #microsky #phagesky #phage
biorxiv.org
Phages communicate across species to shape microbial ecosystems
Arbitrium is a communication system that helps bacteriophages decide between lysis and lysogeny via secreted peptides. In arbitrium, the AimP peptide binds its cognate AimR receptor to repress aimX ex...
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Tung Le @tunglejic.bsky.social · 03/10/2025
Independent research fellowships leading to tenured positions at the John Innes Centre. Repost = nice. Thank you very much!!!
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Lingchen He 何灵尘 @lingchenhe.bsky.social · 09/09/2025
We discovered a new horizontal gene transfer mechanism: tail-less cf-PICIs hijack free phage tails extracellularly, forming infectious chimeric virions that drive both intra- and inter-species transfer among bacteria. @jonaszpatkowski.bsky.social @tcostalab.bsky.social @jrpenades.bsky.social
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José R Penadés @jrpenades.bsky.social · 09/09/2025
Thrilled to share our two latest papers with the @tcostalab.bsky.social lab! In the first, we uncover a new mechanism of satellite transfer: cf-PICIs hijack tails from diverse phages to spread across species. @imperialcollegeldn.bsky.social www.cell.com/cell/fulltex...
cell.com
Chimeric infective particles expand species boundaries in phage-inducible chromosomal island mobilization
Capsid-forming PICIs (cf-PICIs) produce their own capsids and exploit phage tails from unrelated species to transfer their DNA across bacterial hosts. This tail piracy enables broad dissemination and ...
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Tiago Costa @tcostalab.bsky.social · 09/09/2025
Thrilled to share that two of our papers with @jrpenades.bsky.social & GoogleDeepMind are now out in @cellpress.bsky.social 1️⃣Microbial piracy: tinyurl.com/yvf6t3b3 2️⃣AI co-scientist mirrors experimental science: tinyurl.com/2dym92kj @imperialcollegeldn.bsky.social @imperiallifesci.bsky.social
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Itai Yanai @itaiyanai.bsky.social · 04/09/2025
New review 🔥 Single-cell RNA-Seq has been revolutionary for studying eukaryotic cells and now it's time for it to do the same for microbes! We describe the technology for single-bacterium RNA-Seq & the questions now studied using it.🧵⬇️ science.org/doi/10.1126/... @andrewpountain.bsky.social
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Aisling Brady @aislingbrady.bsky.social · 27/08/2025
What is everyone's favourite review on anti-phage/defence systems? Ideally as an introduction to the concept/key systems for undergraduate level without expertise in phage biology #MicroSky #PhageSky
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Alvaro San Millan @sanmillan.bsky.social · 13/08/2025
New paper in collaboration with the @asantoslopez.bsky.social lab! www.biorxiv.org/content/10.1...
biorxiv.org
Plasmids promote antimicrobial resistance through Insertion Sequence-mediated gene inactivation
Antimicrobial Resistance (AMR) is a major threat to public health. Plasmids are mobile genetic elements that can rapidly spread across bacterial populations, promoting the dissemination of AMR genes i...
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ASM @asm.org · 30/07/2025
Why do some people age more healthily than others? The answer may come, in part, from our guts and the massive community of microbes living in them. Discover how aging shapes—and is shaped by—the gut microbiota: asm.org/Articles/202...
asm.org
Aging and the Gut: The Microbiome's Second Act | ASM.org
Why do some people age more healthily than others? The answer may come, in part, from our guts and the massive community of microbes living in them.
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Microbiology Society @microbiologysociety.org · 01/07/2025
Today, Professor Donal Wall, @uofglasgow.bsky.social attended a pitch session as part of the Science, Innovation and Technology Committee's 'Under the Microscope' inquiry to explain why they should be interested in microbiomes.
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Xu Kuang @antiphagexu.bsky.social · 22/05/2025
Let’s talk about/with/to phage!
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Sebastian S. Cocioba @atinygreencell.bsky.social · 02/05/2025
I got hit by some rather sudden and extreme financial hardship so if anyone is in need of remote wetlab contract research, strictly BSL1, do let me know. Currently scrambling for gigs. Plant, Bacterial, Archaeal Non-model Bioeng Custom Lab Hardware Turn Key Genetic Design Please repost for reach 💚
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Nature Portfolio @natureportfolio.nature.com · 13/04/2025
Gene editing and many other useful biotechnology tools came from studies of bacteria fighting off viral invaders, but scientists have only begun to unlock the secrets of this microbial warfare. Read the Nature feature on what breakthroughs could be next. 🧪
go.nature.com
Microbial warfare brought us CRISPR. What big breakthroughs could be next?
Gene editing and many other useful biotechnology tools came from studies of bacteria fighting off viral invaders. But scientists have only begun to unlock the secrets of this ancient arms race.
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Alf Soler-Bistué 🦠🔬🧫 @alfmicrobe.bsky.social · 10/04/2025
I was waiting two years to see this out!! The genomic location of bacterial genes is not random!!! Congratulation on the authors (Martin Lercher and Team!). www.science.org/doi/10.1126/...
science.org
Most bacterial gene families are biased toward specific chromosomal positions
The arrangement of genes along bacterial chromosomes influences their expression through growth rate–dependent gene copy number changes during DNA replication. Although translation- and transcription-...
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PLOS Biology @plosbiology.org · 08/04/2025
The BASEL collection of E. coli #phages is limited by its host strain. @humollidorentina.bsky.social @damienpiel.bsky.social @aharms485.bsky.social &co use a modified host to add 36 new phages, revealing roles of O-antigen in recognition & R-M systems in immunity @plosbiology.org 🧪 plos.io/4jirGvX
A fanciful depiction of BASEL phages on a roadmap. Credit: Fabienne Estermann
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Nuria Quiles @quilesnuria.bsky.social · 31/03/2025
PhD opportunity in a fantastic topic with great supervisors. Check it out!
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José R Penadés @jrpenades.bsky.social · 27/03/2025
If you are interested in phage satellites, we hope you'll enjoy this. Fun collaboration with the Rocha, Seed, Bikard, and Chen labs! rdcu.be/efkvG
rdcu.be
Genetics, ecology and evolution of phage satellites
Nature Reviews Microbiology - In this Review, Penadés et al. explore the genetics, potential origins and life cycle of phage satellites, and they discuss the impact of these elements on the...
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I2SysBio @i2sysbio.es · 22/03/2025
We welcome on BlueSky Alfred Fillol Salom @alfredfisa.bsky.social, the leader of the The Ecology of Mobile Genetic Elements group at our research institute #microsky 🧫🦠🧪 #phages #virology #viruses
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Vivek Mutalik @vivekmutalik.bsky.social · 09/03/2025
Made a feed for phage papers/discussions/friends! Please feel free to pin this feed to your bluesky profile and if you wish to add to the feed, simply add the #phage hashtag (NOT case sensitive) and the feed will aggregate the posts. See you there! Please repost🙏🏽
media.tenor.com
a cartoon drawing of a man in a white superhero costume
Alt: a cartoon drawing of a man in a white superhero costume
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Kirsty Wan @micromotility.bsky.social · 04/03/2025
Re-posts appreciated! We have an open PhD position w/ Prof Harold Auradou on #microswimmers/#protists in complex media! Students get to spend at least 12 months in Paris, and will receive their PhD from both Exeter and Paris-Saclay! Apply by 31st Mar. More details: adum.fr/as/ed/voirpr...
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Kevin Forsberg @kvnforsberg.bsky.social · 03/03/2025
My lab’s first preprint! We used functional metagenomics to identify phage defenses in human and soil microbiomes. We scaled these selections while maintaining accuracy, enabling us to examine 9 habitats for defense elements against 7 phages. www.biorxiv.org/content/10.1... 1/10
Functional Metagenomic Selections for Phage Defense
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 28/02/2025
A prophage-encoded anti-phage defense system that prevents phage DNA packaging by targeting the terminase complex www.biorxiv.org/content/10.1101/202…
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Ben Adler @benadler.bsky.social · 26/02/2025
It is finally out! Muntathar Al-Shimary, @doudna-lab.bsky.social , @cresslab.bsky.social and I present a gene knockdown tool that works in diverse bacteriophages: CRISPRi through antisense RNA Targeting (CRISPRi-ART)! Check it out @naturemicrobiol.bsky.social www.nature.com/articles/s41...
nature.com
CRISPRi-ART enables functional genomics of diverse bacteriophages using RNA-binding dCas13d - Nature Microbiology
Leveraging RNA-targeting dCas13d enables selective interference with phage protein translation and facilitates measurement of phage gene fitness at a transcriptome-wide scale.
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Fernando Rossine @fernpizza.bsky.social · 21/02/2025
I'm so happy that I can finally share the results of my first postdoc paper with @baym.lol!!! Turns out plasmids are an amazing system to study multi-scale evolution and we can track within-cell and between-cell dynamics! (1/n) www.biorxiv.org/content/earl...
biorxiv.org
Intracellular competition shapes plasmid population dynamics
Conflicts between levels of biological organization are central to evolution, from populations of multicellular organisms to selfish genetic elements in microbes. Plasmids are extrachromosomal, self-r...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 12/02/2025
Chimeric infective particles expand species boundaries in phage inducible chromosomal island mobilization www.biorxiv.org/content/10.1101/202…
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Richard Lenski @relenski.bsky.social · 08/02/2025
Many of us, and especially early-career scientists, are facing huge challenges now. However, one of the joys of science is to delve into thinking about research. In that spirit, I offer this blog post on starting a microbial evolution experiment. telliamedrevisited.wordpress.com/2025/02/08/h...
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Michael Brockhurst @brockhurstlab.bsky.social · 06/02/2025
☎️ Calling #MEvoSky ☎️ 2x 5-year research associate / research assistant positions in experimental evolution ERC-funded project: How do mobile genetic elements and defence systems shape bacterial genome evolution? Join the friendly and exciting @mermanchester.bsky.social community in Manchester!
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Alexander Harms @aharms485.bsky.social · 06/02/2025
🚨 🧬 Updated preprint on the completed BASEL collection - what's new? Some fun with bacterial immunity and a new P22 relative infecting E. coli K-12. A thread 🧵
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Mike Inouye @mikeinouye.bsky.social · 01/02/2025
Headline click bait but this is an excellent bit size interview. Sometimes Guardian science hits the mark. www.theguardian.com/science/2025...
theguardian.com
Virologist Wendy Barclay: ‘Wild avian viruses are mixing up their genetics all the time. It’s like viral sex on steroids’
The British scientist on the risk of humans contracting bird flu, how people would cope with new lockdowns and being asked to pour the tea because she is a woman
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Saloni @scientificdiscovery.dev · 23/12/2024
Many people talk about the "Golden Age of Antibiotics", but I hadn't seen it visualized properly. Just how many types of antibiotics were discovered during that time? So, I visualized it myself!
A timeline titled "The Golden Age of Antibiotics" shows when each antibiotic drug class was first available for medical use, with example antibiotics labeled. Classes are color-coded by their source: actinomycetes, other bacteria, fungi, or synthetic. Milestones include the first antibiotics (arsphenamines in 1910), as well as the discovery of many actinomycetes-derived antibiotics, such as streptomycin, and sulfonamides, penicillins, and tetracyclines. Data: Hutchings, Truman, Wilkinson (2019). Created by Saloni Dattani for Our World in Data.
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Ákos T Kovács @evolvedbiofilm.bsky.social · 13/01/2025
Happy to see this multi country collaboration published in @cp-cellreports.bsky.social led by Polonca and Anna Ecology of prophage-like elements in Bacillus subtilis at global and local geographical scales www.cell.com/cell-reports... #Phage #Bacillussubtilis #MicrobiomeEcology at #LeidenBiology
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 02/01/2025
The mycomembrane differentially and heterogeneously restricts antibiotic permeation www.biorxiv.org/content/10.1101/202…
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 02/01/2025
Persistent virulent phages exist in bacterial isolates www.biorxiv.org/content/10.1101/202…
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Alvaro San Millan @sanmillan.bsky.social · 30/12/2024
www.nature.com/articles/s41... New paper out!!
nature.com
A plasmid-chromosome crosstalk in multidrug resistant enterobacteria - Nature Communications
The authors describe a new crosstalk between a globally disseminated carbapenem resistance plasmid and clinical enterobacteria clones. This crosstalk provides a fitness advantage to the plasmid-carryi...
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