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Pavel Barahtjan

@pavelbarahtjan.bsky.social
291 followers 421 following 18 posts

Lipids | Membranes | Tardigrades | Chemical Biology | PostDoc @EPFL | Alumnus @MPICBG

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Reposted by Pavel Barahtjan
Milena Schuhmacher @mschuhmacher.bsky.social · 01/10/2026
So excited to join the Perutz! #lipidtime I will also be looking for new PhD students and postdocs soon ☺️
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Max Perutz Labs Vienna @maxperutzlabs.ac.at · 30/09/2026
Exciting news for the Perutz: @mschuhmacher.bsky.social will join the institute as a new group leader in 2027! 🎉 Currently leading an independent group at EPFL Lausanne, Milena brings an innovative chemical biology approach to lipid research ➡️ tinyurl.com/4x9xm24m
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Mathilda Lennartz @mathilda95.bsky.social · 30/09/2026
UPDATE!: I am absolutely stoked that the second paper of my PhD is now out in @natcellbio.nature.com :D. We combined lipid imaging, STED microscopy, and mathematical modelling in a super cool team effort to quantify lipid partitioning inside clathrin-coated pits. www.nature.com/articles/s41....
nature.com
Quantification of lipid sorting during clathrin-mediated endocytosis - Nature Cell Biology
Lennartz et al. evaluate lipid enrichment in clathrin-coated pits and observe that the differential lipid partitioning into clathrin-coated pits is largely driven by the lipid asymmetry of the plasma ...
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Giovanni D’Angelo @giodang.bsky.social · 23/09/2026
#lipidtime: It's a lipid universe. Today in Nature we publish the Lipid Brain Atlas, the first map of membrane lipid composition across the entire mouse brain, a layer of organisation that cell-type and transcript maps had left out. #lipidomics #neuroscience #BrainAtlas
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Erdinc Sezgin @sciezgin.bsky.social · 17/09/2026
New paper out: Plasma membrane order maps functional diversity in immune cells We showed how biophysical state of the membranes correlates with the activity of immune cells such as migration and killing. www.nature.com/articles/s41...
nature.com
Plasma membrane order maps functional diversity in immune cells - Nature Chemical Biology
Cells undergo membrane remodeling in response to the environment to perform specific functions. Now, a cytometry-based method with immune cell biomarker analysis captures variations in plasma membrane...
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André Nadler @nadlerlab.bsky.social · 25/08/2026
Oh my. Not great. Not great at all.
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André Nadler @nadlerlab.bsky.social · 29/07/2026
Lipids build the membranes of all cells, but identifying their precise functions is extremely challenging. Here’s our attempt to change that: How to find and understand lipid-protein interactions, by Katelyn Cook & company. www.biorxiv.org/content/10.6...
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Pavel Barahtjan @pavelbarahtjan.bsky.social · 18/06/2026
Happy to see our review on glycosphingolipids in cell identity out in @cp-trendsbiochem.bsky.social. We discuss how GSLs shape cell identity, from biosynthesis to function, and how tools like bifunctional #lipids and MALDI-MSI let us study them to new depths. tiny.cc/t495101
tiny.cc
Glycosphingolipids in cell identity: Biosynthesis, functions, and emerging tools
Cell fate is shaped by external cues and intrinsic cellular states. While supracellular signals, such as growth factors, provide instructive guidance, emerging evidence highlights the role of cell-aut...
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Pavel Barahtjan @pavelbarahtjan.bsky.social · 18/06/2026
Happy to see our review on glycosphingolipids in cell identity out in @cp-trendsbiochem.bsky.social. We discuss how GSLs shape cell identity, from biosynthesis to function, and how tools like bifunctional #lipids and MALDI-MSI let us study them to new depths. tiny.cc/t495101
tiny.cc
Glycosphingolipids in cell identity: Biosynthesis, functions, and emerging tools
Cell fate is shaped by external cues and intrinsic cellular states. While supracellular signals, such as growth factors, provide instructive guidance, emerging evidence highlights the role of cell-aut...
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Reposted by Pavel Barahtjan
Trends in Biochemical Sciences @cp-trendsbiochem.bsky.social · 23/06/2026
Read the Review article "Glycosphingolipids in cell identity: Biosynthesis, functions, and emerging tools" from Dr. Pavel Barahtjan, Nika Goršek, Jean Maillat, and Giovanni D'Angelo: authors.elsevier.com/sd/article/S...
authors.elsevier.com
Glycosphingolipids in cell identity: Biosynthesis, functions, and emerging tools
Cell fate is shaped by external cues and intrinsic cellular states. While supracellular signals, such as growth factors, provide instructive guidance,…
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Reposted by Pavel Barahtjan
Trends in Biochemical Sciences @cp-trendsbiochem.bsky.social · 23/06/2026
🧬 Beyond serving as membrane components, #glycosphingolipids help encode cellular identity by shaping membrane organization, receptor signaling, and cell recognition through an intricate molecular #GlycolipidCode. #CellIdentity #MembraneBiology #Lipidomics
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Antonino Asaro @antonino-asaro.bsky.social · 07/05/2026
Very happy to share our work on Ether lipid remodeling and ferroptosis. This was a very fruitful collaboration with @harayamajrlab.bsky.social . Many thanks to @giodang.bsky.social for the support and guidance, and to Howard Riezman, where part of this story began. www.biorxiv.org/content/10.6...
biorxiv.org
Ether lipid remodeling during neuronal differentiation prevents ferroptosis
Ferroptosis is a form of cell death driven by iron-dependent lipid peroxidation, with specific lipid species playing key roles in modulating susceptibility. Among these, ether lipids have shown conflicting effects, being linked to both protection and sensitization. Here, we dissect the relationship between lipid structure and ferroptosis sensitivity and explain how ether lipids exert context-dependent effects. Ether lipids can promote ferroptosis through a metabolic bias towards the accumulation of polyunsaturated acyl chains and ethanolamine head groups, whereas this pro-ferroptotic tendency is counterbalanced by the anti-ferroptotic vinyl ether moiety introduced by plasmanylethanolamine desaturase 1. We show that this protective effect is critical for preventing ferroptosis in hiPSC-derived neurons, which accumulate otherwise pro-ferroptotic ether lipids during differentiation. This effect is not solely due to its antioxidant properties but also stems from the reprogramming of mitochondrial respiration. The lack of vinyl ether bonds leads to multiple mitochondrial defects, including increased mitochondrial reactive oxygen species (ROS), lower membrane potential, and abnormal cristae structures. These findings indicate that vinyl ether bonds in ether lipids offer dual ferroptosis resistance by scavenging ROS and minimizing its production at the mitochondrial level. The disruption of this system in Caenorhabditis elegans leads to iron-induced death and impaired motility. Thus, our study reveals ether lipid structural remodeling as a key regulator of ferroptosis sensitivity in neurons. ### Competing Interest Statement The authors have declared no competing interest. Deutsche Forschungsgemeinschaft, AS 647/1-1 Agencia Estatal de Investigación, PID2023-146930NB-I00 Japan Science and Technology Agency, JPMJER2101, JPMJFR230H, JPMJND2305, 25H01425, 25H01426, JPMJAP2505 National Research Agency French government, ANR-25-CE44-1525 Agencia Estatal de Investigación (AEI)-Spain, PID2021-123336NB-C21, PID2024-158644NB-C21 Swiss National Science Foundation, 185898, 184949 CNRS/Inserm ATIP-Avenir, ANR-15-IDEX-01
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André Nadler @nadlerlab.bsky.social · 13/04/2026
Now out in its final form in @jacs.acspublications.org: Reaction pathways & photoreaction yields of bifunctional lipid probes. The numbers that explain why we spend so much time optimizing protocols for cellular assays. 😉 pubs.acs.org/doi/10.1021/...
pubs.acs.org
Bifunctional Lipid–Protein Cross-linking Efficiency and Reaction Products
Bifunctional diazirine lipids are versatile tools for mapping protein–lipid interactions and cellular localization by photo-cross-linking. Yet, the cross-linking efficiency of these probes has not bee...
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Reposted by Pavel Barahtjan
André Nadler @nadlerlab.bsky.social · 23/03/2026
It’s incredibly hard to study lipids in biological membranes on the nanoscale. You need near-perfect information on both membrane ultrastructure and lipid density. Lipid-CLEM, now out in @natcellbio.nature.com brought to you by @mathilda95.bsky.social changes that: www.nature.com/articles/s41...
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Pavel Barahtjan @pavelbarahtjan.bsky.social · 23/03/2026
So glad to see this one out. Insane work.
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tafesselab.bsky.social @tafesselab.bsky.social · 24/02/2026
Our paper on The Lipid Interactome is now published, and the database is open: lipidinteractome.org @ohsummi.bsky.social @ohsunews.bsky.social @nadlerlab.bsky.social @jeremybaskin.bsky.social Please RT to spread the word. doi.org/10.1093/bioi...
doi.org
The Lipid Interactome: an interactive and open access platform for exploring cellular lipid–protein interactions
AbstractSummary. Lipid–protein interactions play essential roles in cellular signaling and membrane dynamics, yet their systematic characterization has lon
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Pavel Barahtjan @pavelbarahtjan.bsky.social · 17/02/2026
Amazing story. Congrats!
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André Nadler @nadlerlab.bsky.social · 26/01/2026
Methods should be used as widely as possible, so here is our detailed lipid imaging protocol, written with @martinba99.bsky.social and Chia-Yi (Christine) Chou authors.elsevier.com/a/1mU4XHRzCb... in Methods in Enzymology. Everything you need to know to do it yourself is in there -
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André Nadler @nadlerlab.bsky.social · 26/01/2026
It's always important to carefully characterize the reactivity of your favorite tools to optimize applications. We teamed up with Carla Kirschbaum and Carol V. Robinson to map photolysis reaction pathways of bifunctional lipids www.biorxiv.org/content/10.6...
biorxiv.org
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Pavel Barahtjan @pavelbarahtjan.bsky.social · 23/01/2026
We have several Master’s thesis projects available in the D’Angelo lab, spanning different areas of lipid biology/biochemistry. If you know someone who might be interested, we’d really appreciate you sharing this. #lipidtime www.epfl.ch/labs/dangelo...
epfl.ch
Master Projects
DANGELOLAB
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Max Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 09/01/2026
With Byung Ho Lee and Kana Fuji as first/lead authors, @anne-grapin.bsky.social group, @utokyoofficial.bsky.social, Inst. of Physics of Academia Sinica, & @igbmc.bsky.social found the shape of lumens in the developing pancreas is controlled by pressure & proliferation. www.mpi-cbg.de/news-outreac...
mpi-cbg.de
Engineering the development of the pancreas
Researchers found that the shape of the fluid-filled cavities in the developing pancreas is controlled by pressure and the rate cells divide.
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Pavel Barahtjan @pavelbarahtjan.bsky.social · 29/10/2025
Congrats @mikelangelipid.bsky.social and @olzmannlab.bsky.social ! Amazing story and findings.
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Gioele La Manno @gioelelamanno.bsky.social · 16/10/2025
🧠 The Lipid #Brain Atlas is out now! If you think #lipids are boring and membranes are all the same, prepare to be surprised. Led by @lucafusarbassini.bsky.social with Giovanni D'Angelo's lab, we mapped membrane lipids in the mouse brain at high resolution. www.biorxiv.org/cgi/content/...
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Oded Rechavi @odedrechavi.bsky.social · 15/10/2025
BIG ANNOUNCEMENT📣: I haven’t been this excited to be part of something new in 15 years… Thrilled to reveal the passion project I’ve been working on for the past year and a half!🙀🥳 (thread 👇)
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André Nadler @nadlerlab.bsky.social · 09/10/2025
Lipid imaging on the cover of @nature.com! Great times for lipid cell biology indeed. And a fantastic recognition of all the hard work by the team, especially Juan M. Iglesias-Artola and Kristin Böhlig (who made the cover). Link to article: www.nature.com/articles/s41...
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James Saenz @jamessaenz.bsky.social · 24/09/2025
🌶️ Lipids bring the heat 🔥 Lipids don’t just shape membranes, they influence cellular metabolism. We show that tuning lipidome composition strongly alters metabolic heat flow in the minimal cell JCVI-Syn3B 🦠 Fantastic collaboration with Karim Fahmy’s lab (HZDR) 🎉 www.biorxiv.org/content/10.1...
biorxiv.org
Metabolic heat flow from the minimal cell JCVI-Syn3B reveals the lipidome-dependence of growth and metabolism
The cell membrane facilitates interactions with the environment and serves as an organizational platform for coordinating cellular processes, with lipids playing a central role in determining membrane...
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Milena Schuhmacher @mschuhmacher.bsky.social · 04/09/2025
So honored to be awarded the ERC Starting Grant! I am very grateful for this support and looking forward to more exciting #lipidtime 🥳 Also, we will have positions available next year. So stay tuned!
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paveltomancak.bsky.social @paveltomancak.bsky.social · 04/09/2025
We are all super happy and proud to see our work on the function and evolution of the #cephalic #furrow published in @nature.com. Let me say a few things about the background and history of this work on the #Evolution_of_Morphogenesis (1/12)
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Giovanni D’Angelo @giodang.bsky.social · 03/09/2025
Happy to share our work on uMAIA, a framework for building metabolomic atlases from mass spectrometry imaging. With uMAIA, we mapped the lipidome of zebrafish development, uncovering spatially organized metabolic programs . www.nature.com/articles/s41... #developmentalbiology #MSI #lipidtime
nature.com
Unified mass imaging maps the lipidome of vertebrate development
Nature Methods - uMAIA is an analytical framework designed to enable the construction of metabolic atlases at high resolution using mass spectrometry imaging data.
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André Nadler @nadlerlab.bsky.social · 21/08/2025
Out today in @nature.com: Together with the Honigmann, Shevchenko, Drobot and Hof labs, we present a general workflow for imaging the localization and transport of individual lipids in cells and mapping their metabolism. www.nature.com/articles/s41...
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Jeremy Baskin @jeremybaskin.bsky.social · 20/08/2025
Quite a week for #lipidtime: phenomenal study using bifunctional lipid probes to quantify intracellular lipid transport from @nadlerlab.bsky.social and colleagues is now out @nature.com! www.nature.com/articles/s41...
nature.com
Quantitative imaging of lipid transport in mammalian cells - Nature
Directional, non-vesicular lipid transport is responsible for fast, species-selective lipid sorting into organelle membranes.
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Milena Schuhmacher @mschuhmacher.bsky.social · 12/08/2025
We are hiring! If you are looking for a postdoc position and you are interested in signaling lipids and proteomics, come join us in beautiful Switzerland! More information on www.epfl.ch/labs/gr-schu...
epfl.ch
Open positions
GR-SCHUHMACHER
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Pavel Barahtjan @pavelbarahtjan.bsky.social · 29/05/2025
The world is small... Randomly found out that @mikelangelipid.bsky.social and I are both in Osaka, so we met up for some drinks and #lipidtime talk.
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Rita Mateus @ritamateus.bsky.social · 13/05/2025
Think biosensors that give absolute measurement values! So happy this is out :) congrats to everyone involved, especially @sascha-kuhn.bsky.social and @nadlerlab.bsky.social
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André Nadler @nadlerlab.bsky.social · 06/05/2025
Why are biological membranes asymmetric, with different lipids in the two bilayer leaflets? Discovered in the 70s, lipid asymmetry is linked to many cellular processes, but why the cell needs it is largely unclear. @pavelbarahtjan.bsky.social addresses this question: www.biorxiv.org/content/10.1...
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André Nadler @nadlerlab.bsky.social · 13/05/2025
Meet GEQO: Genetically-encoded biosensors for absolute small-molecule quantification in single cells brought to you by @sascha-kuhn.bsky.social. For simple absolute quantification of your favourite small molecule or ion, head on over to @bioarxiv and read our new preprint: doi.org/10.1101/2025...
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Coskun Lipid Cellar @ ZML Dresden @lipid.bsky.social · 09/05/2025
An amazing new enabling technology. Measurements of molecular size and shape on a chip. Couldn't be prouder of our friend Madhavi Krishnan of @ox.ac.uk this was and is one among the must fun collaborations I ever had. www.science.org/doi/10.1126/...
science.org
Measurements of molecular size and shape on a chip
Size and shape are critical discriminators between molecular species and states. We describe a microchip-based high-throughput imaging approach offering rapid and precise determination of molecular pr...
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Pavel Barahtjan @pavelbarahtjan.bsky.social · 06/05/2025
Really happy that my main PhD story is out! Huge thanks to everyone involved - especially @nadlerlab.bsky.social - for giving me the opportunity to work on this amazing topic.
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Pavel Barahtjan @pavelbarahtjan.bsky.social · 10/03/2025
Amazing work! Of course LA is the answer to all questions :D
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jean-maillat.bsky.social @jean-maillat.bsky.social · 16/01/2025
Amazing review to learn about single-cell lipid biology ! Congratulations to all authors @antonino-asaro.bsky.social @Agostina Crotta Asis @giodang.bsky.social published in @cp-trendscellbio.bsky.social ! www.cell.com/trends/cell-...
cell.com
Single cell lipid biology
Lipids are major cell constituents endowed with astonishing structural diversity. The pathways responsible for the assembly and disposal of different lipid species are energetically demanding, and gen...
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