Sign in

Patrick Pausch

@patrick-pausch.bsky.social
396 followers 522 following 19 posts

Research Professor & Group Leader at Vilnius University, LSC-EMBL - CRISPR, Gene Editing and Microbiology

PostsRepliesMedia
Reposted by Patrick Pausch
Dina Grohmann @curiousdina.bsky.social · 28/09/2026
🌙 Bringing Archaea to moon! Our latest study with the Orsi lab shows that M. okinawensis can survive, perform methanogenesis, and grow under simulated Enceladus conditions. Yet another reminder of how astonishingly adaptable Archaea are. www.science.org/doi/10.1126/...
science.org
Enceladus-like geochemistry fuels methanogenesis under extreme CO2 limitation
Saturn’s icy moon Enceladus features chemical signatures consistent with an alkaline soda ocean with H2 production via hydrothermal water-rock reactions. Chemolithoautotrophic methanogenesis is thermo...
0107
Reposted by Patrick Pausch
Alexander Harms @aharms485.bsky.social · 25/09/2026
The final version of our manuscript on TnSeq in bacteriophages (“HIDEN-SEQ”) is out today – if you have an interesting phage phenotype and want to know the underlying genetic basis, this one is for you! 1/4
515068
Reposted by Patrick Pausch
Martin Pacesa @martinpacesa.bsky.social · 21/09/2026
ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi...
4292141
Reposted by Patrick Pausch
Doudna Lab @doudna-lab.bsky.social · 19/09/2026
Out now in Science: Two papers from our lab reveal VIPR, an RNA-guided DNA-targeting system in bacteriophages, providing clues to the origins of CRISPR www.science.org/doi/10.1126/... www.science.org/doi/10.1126/... Congrats to Peter Yoon, @kenjmloi.bsky.social @terryzzy.bsky.social, T.Docter & team
science.org
A noncontiguous code for RNA-guided DNA recognition at the origin of CRISPR-Cas
CRISPR-Cas provides RNA-mediated adaptive immunity, but how its first RNA-guided effector arose is unclear. In this study, we report the discovery of Viral Interference Programmable Repeat (VIPR) syst...
217569
Reposted by Patrick Pausch
Vivek Mutalik @vivekmutalik.bsky.social · 19/09/2026
Some of the smallest 😎 viruses on Earth are all around us. Three or four genes 😍 each, in nearly every environment. We keep finding thousands by sequencing, yet don't know who they infect, can't easily isolate them, or even how the few we have infect a cell. Our new preprint takes this on 🧵👇
Schematics of how single strand RNA and DNA phages infect bacteria with F-pilus
513456
Reposted by Patrick Pausch
Mariana Schuster @marischuster.bsky.social · 07/09/2026
I'm excited to share that my newly funded #ERCStG FRONTERA is recruiting two postdoctoral researchers at @ipbhalle.bsky.social 🌱🔬 If you are passionate about plant immunity, proteolysis, membrane proteins, or proteomics, I'd love to hear from you. 🧵 Please RT/share!
18884
Reposted by Patrick Pausch
cryoEM papers @cryoempapers.bsky.social · 28/08/2026
Structural biology of retron-mediated immunity against phage pubmed.ncbi.nlm.nih.gov/42658732/ #cryoEM
032
Reposted by Patrick Pausch
Jens Hör @jenshoer.bsky.social · 10/08/2026
Do you need to analyze bacterial microscopy data and are looking for an all-in-one tool for Windows or macOS? Check out BactoMate by Lasse Hallenga and Philipp Popp! I'm happy that we were able to contribute to this great work. www.biorxiv.org/content/10.6...
biorxiv.org
BactoMate: an integrated platform for reproducible bacterial microscopy analysis
Quantitative microscopy of microorganisms increasingly produces large, multidimensional datasets, yet their analysis often depends on fragmented workflows spanning file conversion, segmentation, quali...
04020
Reposted by Patrick Pausch
Jason Nomburg @jnoms.bsky.social · 22/07/2026
Happy to share the first preprint out of the Nomburg lab! Many aspects of cellular immunity are shared across the tree of life. Here, we show that some of these conserved aspects of cellular immunity are mirrored by conserved effectors of immune antagonism. Thread below! 1/15
38249
Reposted by Patrick Pausch
Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 21/07/2026
1/4 Every good defence needs a backup! 🛡️⚔ Out now in @natrevmicro.nature.com our Comment on "𝗶𝗺𝗺𝘂𝗻𝗲 𝘀𝗮𝗳𝗲𝗴𝘂𝗮𝗿𝗱𝗶𝗻𝗴"! 🎉 🔗 www.nature.com/articles/s41...
nature.com
Immune safeguarding as a conserved principle of antiviral defence - Nature Reviews Microbiology
All organisms defend against viral infections through active immunity mechanisms that clear the virus or population-level mechanisms that cause regulated cell death. Recent research increasingly shows...
17145
Reposted by Patrick Pausch
Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 16/07/2026
1/10 🚨Preprint! One RING to rule them all (phages)👑💍⚔️ Bacteria build giant DNA-scaffolded RNase rings (larger than the ribosome!) to shut down viral infection🧬🧵👇 biorxiv.org/content/10.6...
411857
Reposted by Patrick Pausch
Arturo Carabias @arturocdr.bsky.social · 16/07/2026
🧬 Thrilled to share our latest @biorxiv-microbiol.bsky.social preprint! Here we find that Retron-IX build crazy supramolecular rings scaffolded by DNA molecules that sense phage infection! www.biorxiv.org/content/10.6... Read more below🧵! (1/X)
37128
Reposted by Patrick Pausch
Doudna Lab @doudna-lab.bsky.social · 16/07/2026
Our AI-guided design of RNA-guided nucleases is now out in @science.org 💻🧬 We used structure and evolutionary data to generate minimal, active and divergent gene editors! www.science.org/doi/10.1126/... Congrats to @petrskopintsev.bsky.social @isabelesain.bsky.social @evandeturk.bsky.social & team!
science.org
Structure and evolution-guided design of minimal RNA-guided nucleases
The design of RNA-guided nucleases with properties not limited by evolution can expand programmable genome-editing capabilities. However, generating diverse multidomain proteins with robust enzymatic ...
212841
Reposted by Patrick Pausch
Rafal Mostowy @rafalmostowy.bsky.social · 15/07/2026
PhD opening in my lab @jagiellonskiuni.bsky.social: using AI to predict how phage enzymes break down bacterial capsules — joint work with ML group GMUM and Zuzanna Drulis-Kawa's phage lab (Wrocław), spanning genomics, AI & evolution. mostowylab.com/job-phd-ai-d... Deadline: 15 August 2026
1916
Reposted by Patrick Pausch
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 15/07/2026
A DNA-scaffolded Retron Ring Mediates Antiphage Immunity www.biorxiv.org/content/10.64898/20…
0117
Reposted by Patrick Pausch
Jelena Godrijan 🫧❾🌊🦋 @godi.bsky.social · 14/07/2026
Join us at the EMBO Young Scientists’ Forum 2026 in Dubrovnik, 28–30 October. All areas of life sciences are welcome! ⏰ Early-bird registration ends 15 July. #EYSF2026 #LifeSciences
047
Reposted by Patrick Pausch
Rafal Mostowy @rafalmostowy.bsky.social · 10/07/2026
Klebsiella phages often modify the bacterial capsule instead of degrading it, stripping acetyl groups. Nobody's traced how this evolves. I'm hiring a computational postdoc to find out — Kraków, apply by 21 July. mostowylab.com/job-postdoc-...
11410
Reposted by Patrick Pausch
Martin Pacesa @martinpacesa.bsky.social · 07/07/2026
We often talk about complex protein folds but what does that really mean? Turns out we don't have a good metric for it. So we made a game to make one! Head over to our website to vote on which fold you think is more complex and why! pacesalab.com/foldcomplexi...
13417
Reposted by Patrick Pausch
Jacob Corn @jcornlab.bsky.social · 30/06/2026
Do you need a super active #CRISPR Cas for in vivo editing? I have not one, but two options for you. Activities rival SpyCas9, but they fit into an scAAV. Check out our latest paper, co-led by Fedor Gorbenko and Irene Sala. Just out in Genome Research. link.springer.com/article/10.1...
054
Reposted by Patrick Pausch
Jelena Godrijan 🫧❾🌊🦋 @godi.bsky.social · 30/06/2026
This year #EYSF2026 is in Dubrovnik, Croatia! 🔗 event.fourwaves.com/eysf/pages ▶️ For early-career life scientists across Europe: interdisciplinary presentations, networking, collaborations, and creative scientific exchange. & we have a special session #ProtistsOnSky
031
Reposted by Patrick Pausch
Constantinos Patinios @copabio.bsky.social · 29/06/2026
1/4 Excited to share our new preprint on phage genome editing: Targeted DNA nicking enables efficient, single-step and counterselection-free editing of bacteriophage genomes Preprint: lnkd.in/dv4g5kW6
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
2149
Reposted by Patrick Pausch
Martin Pacesa @martinpacesa.bsky.social · 15/06/2026
Our lab website is finally online! pacesalab.com You can find information about our research, publications, and on-going developments in the lab.
1508
Reposted by Patrick Pausch
Danijel Majić @danijelmajic.bsky.social · 11/06/2026
Und das ganze Auditorium schweigt...wir müssen nochmal über Zivilcourage reden.
hessenschau.de
Professorin berichtet über Morddrohungen an Uni: "Marburg ist für mich zum Angstort geworden"
Schmierereien mit Mordaufrufen, Störungen in Seminaren und wachsender Druck: Die Marburger Historikerin Christina Brüning spricht erstmals öffentlich über Bedrohungen gegen sie, warum sie sich an ihre...
23557186
Reposted by Patrick Pausch
Rafal Mostowy @rafalmostowy.bsky.social · 10/06/2026
Phage receptor-binding proteins are known for their LEGO-like modularity, but we still do not fully understand their evolutionary potential and how it shapes phage host range. Our new preprint examines this systematically in Klebsiella phages. 🔗 www.biorxiv.org/content/10.6... Thread 🧵
34622
Reposted by Patrick Pausch
Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 02/06/2026
Phages invented sgRNAs before humans!! 🧬 Obviously, for mischief… 😈 Loved seeing this story unfold!
15624
Reposted by Patrick Pausch
Rafal Mostowy @rafalmostowy.bsky.social · 01/06/2026
Thrilled to share a major milestone from our long-running collaboration with Zuzanna Drulis-Kawa's lab in Wrocław — DepoCatalog, is now out in @natcomms.nature.com: 129 Klebsiella phage depolymerases, 75 capsule types, 5-class structural framework and public database. www.nature.com/articles/s41...
2227
Reposted by Patrick Pausch
New Concepts in Prokaryotic Virus-Host Interaction @spp2330.bsky.social · 18/05/2026
📢 Registration for our International Symposium on “New Concepts in Prokaryotic Virus-Host Interactions” is now open! 🗓️ 5–7 October 2026 📍 Harnack House, Berlin, Germany ➡️ Information and registration: spp2330.de/symposium-20...
12314
Reposted by Patrick Pausch
Rafal Mostowy @rafalmostowy.bsky.social · 04/05/2026
Polish phage science meets Polish visual storytelling 🇵🇱🦠 To celebrate our last paper, we collaborated with an artist who previously worked on The Witcher 3 — to create a comic about phages and why understanding them matters in the fight against antibiotic-resistant bacteria. Comic below 👇
23011
Reposted by Patrick Pausch
Kenneth Loi @kenjmloi.bsky.social · 27/04/2026
Excited to share our discovery of a new programmable RNA-guided DNA-targeting system hiding inside bacteriophages that predates CRISPR. We call it VIPR (Viral Interference Programmable Repeat), and it uses an entirely new logic to find its targets. Thread + link below.
7448197
Reposted by Patrick Pausch
Addgene @addgene.bsky.social · 20/04/2026
Bacteriophages are in a constant arms race with bacteria 🦠 The Phage ORFeome pooled library from the Aaron Whiteley lab contains phage proteins that activate antiphage defense systems — a tool to dissect the mechanisms of bacterial immunity. Aaron Whiteley
twp.ai
Addgene: Phage ORFeome Library
Use the Phage ORFeome Library to uncover the triggers responsible for immune activation.
02810
Reposted by Patrick Pausch
Alex Gao @algao.bsky.social · 16/04/2026
Excited to share our new findings in @science.org on how the DRT3 bacterial defense system uses a reverse transcriptase that builds DNA repeats without a nucleic acid template. Microbes never cease to amaze! www.science.org/doi/10.1126/...
science.org
Science | AAAS
412460
Reposted by Patrick Pausch
VAAM e.V. @vaam-microbes.bsky.social · 14/04/2026
PhD student or postdoc in microbiology? 🔬🦠 We are opening a new round of our career orientation program VAAMentoring – Get matched with an experienced scientist 👨‍🔬👩‍🔬 to help you find your direction🎯 Apply by May 15, 2026 More info🔗 t1p.de/2iamo #microbiology #mentoring #VAAM #PhDlife #Postdoc
055
Reposted by Patrick Pausch
Daan C. Swarts @dcswarts.bsky.social · 09/04/2026
PostDoc position available! (links in post below) Feel free to share!
12523
Reposted by Patrick Pausch
Artem Nemudryi @artemnemudryi.bsky.social · 08/04/2026
‼️Please share‼️ Nemudryi lab is looking for postdocs to join our team and study: 🦠 Bacterial phage defense mechanisms 🧬 RNA repair & CRISPR-based RNA editing Excited about RNA, host-virus interactions & mechanistic biology? Let's talk! Apply: explore.jobs.ufl.edu/en-us/job/53...
explore.jobs.ufl.edu
University of Florida - Details - Postdoctoral Associate
01913
Reposted by Patrick Pausch
Aude Bernheim @audeber.bsky.social · 02/04/2026
How diverse is bacterial immunity ? We report in @science.org how language models allowed us to predict 2.4M antiphage proteins spanning >23K novel potential systems. 👏 @emordret.bsky.social, @alexhv.bsky.social & al doi.org/10.1126/scie... Explore them here defensefinder.mdmlab.fr/wiki/refseq_...
science.org
10229115
Reposted by Patrick Pausch
Sorek Lab @soreklab.bsky.social · 02/04/2026
A big advance in the field of bacterial immunity, from the Bernheim and Laub labs
03813
Reposted by Patrick Pausch
Vivek Mutalik @vivekmutalik.bsky.social · 03/04/2026
📣Huge preprint 🔔 Today we share something our group has been working toward for a long time, led by @lucasmoriniere.bsky.social We asked can we predict which receptor a phage targets from its genome sequence alone? For most phages, we couldn’t. So Lucas set out to do something I had only dreamed of.
Phage receptor prediction from genome sequencing alone. Bacterial receptor (blue) interacting with phage proteins (purple) is shown here
6226120
Reposted by Patrick Pausch
Peter Fineran @peterfineran.bsky.social · 22/03/2026
Only 9 days left to apply for this post doctoral position. Please share and forward to your colleagues.
0812
Reposted by Patrick Pausch
Jens Hör @jenshoer.bsky.social · 21/03/2026
Excited to share the first preprint from the lab! We show that ApeA defends against RNA phage infection by cleaving the phage genome: www.biorxiv.org/content/10.6...
biorxiv.org
110147
Reposted by Patrick Pausch
Kranzusch Lab @kranzuschlab.bsky.social · 16/03/2026
Our lab is excited to share unpublished research on phage defense at the upcoming 2026 Symposium on the Immune System of Bacteria! Today is the last day for abstract submissions: sisb2026.rockefeller.edu Thank you to Marraffini @naamaaviram.bsky.social Seed @jbdsf.bsky.social labs for organizing!
1218
Reposted by Patrick Pausch
meisterlab.bsky.social @meisterlab.bsky.social · 04/03/2026
Exciting news: Our RNA community in @uniregensburg.bsky.social is set to grow! We are opening a Junior Group Leader position in RNA biochemistry / ribonucleases / RNA stability. A great opportunity to start your own team within our collaborative RNA network. Details & application 👇
11722
Reposted by Patrick Pausch
Gert Bange @bangebalcony.bsky.social · 28/02/2026
Great collaboration with the labs of Axel Innis and @patrick-pausch.bsky.social on Typ I-F2 CRISPR-Cas. @synmikro.bsky.social @unimarburg.bsky.social @mpimicrobiomarburg.bsky.social
track.smtpsendmail.com
Structural basis of Cas8-independent Cas3 recruitment in Type I-F2 CRISPR–Cas
Abstract. CRISPR–Cas systems provide adaptive immunity in prokaryotes by targeting and degrading invasive genetic elements. Among them, the Type I-F2 syste
191
Reposted by Patrick Pausch
Nature Structural & Molecular Biology @natsmb.nature.com · 18/02/2026
New online: Structure and mechanism of antiphage retron Eco2
dlvr.it
Structure and mechanism of antiphage retron Eco2
Nature Structural & Molecular Biology, Published online: 18 February 2026; doi:10.1038/s41594-026-01754-2This study shows how the bacterial retron Eco2 defends against viruses. Phage nucleases trigger activation of Eco2, which cuts RNAs, shuts down protein production and stops phage replication.
0126
Reposted by Patrick Pausch
Gytis Dudas @evogytis.bsky.social · 19/02/2026
Now that @mftorresj.bsky.social & I are based at VU Life Sciences Center (one of the birthplaces of CRISPR tech) our publication portfolio gets extra diverse thanks to our phylogenetics & data vis skills. Here's one collaboration with @patrick-pausch.bsky.social: doi.org/10.1038/s415...
doi.org
Structure and mechanism of antiphage retron Eco2 - Nature Structural & Molecular Biology
This study shows how the bacterial retron Eco2 defends against viruses. Phage nucleases trigger activation of Eco2, which cuts RNAs, shuts down protein production and stops phage replication.
083
Patrick Pausch @patrick-pausch.bsky.social · 19/02/2026
1/6) Hot off the press @natsmb.nature.com 🔥! Jasnauskaite et al. reveal how the minimal bacterial retron Eco2 defends against #phage 🛡️. Phage nucleases trigger Eco2, which cuts RNA, shuts down protein production and stops phage replication 🦠🚫. #phagesky #immunity #microbiology #cryo-em rdcu.be/e4AyH
rdcu.be
Structure and mechanism of antiphage retron Eco2
Nature Structural & Molecular Biology - This study shows how the bacterial retron Eco2 defends against viruses. Phage nucleases trigger activation of Eco2, which cuts RNAs, shuts down protein...
53411
Reposted by Patrick Pausch
Seth Shipman @seth-shipman.bsky.social · 18/02/2026
New preprint on Detectrons from @jihoon-han.bsky.social! These are programmable biosensors for RNA that produce DNA barcodes in the presence of their target RNA. Check out Jihoon's quoted thread and the preprint for more: www.biorxiv.org/content/10.6...
0179
Reposted by Patrick Pausch
Nature Structural & Molecular Biology @natsmb.nature.com · 18/02/2026
New online: The phage–bacteria arms race
dlvr.it
The phage–bacteria arms race
Nature Structural & Molecular Biology, Published online: 18 February 2026; doi:10.1038/s41594-026-01768-wIn this issue of Nature Structural & Molecular Biology, we are publishing two studies investigating the mechanisms of how bacteria fight phage invasion, and how phages fight back.
081
Reposted by Patrick Pausch
Vivek Mutalik @vivekmutalik.bsky.social · 18/02/2026
📣new preprint from the phagefoundry.org team 🎉 Jessica Trinh and Catherine Mageeney (Sandia National Laboratories)!! Systematic analysis of prophages from ~1000 Acinetobacter baumannii isolates, induction & screening. We found this 😎 looking phage with bunch of 💍💍
Bacterial viruses image
03513
Reposted by Patrick Pausch
Stand Up for Science! @standupforscience.net · 28/01/2026
Get in, dorks. We're ready for round two. RALLY TO TAKE BACK SCIENCE! 🔬🧪✊ March 7th, 2026 in Washington, DC Learn more at www.standupforscience.net/ma... (link in our bio.)
17520253
Reposted by Patrick Pausch
Emmanuel Saliba @emmanuel-saliba.bsky.social · 28/01/2026
🔔HIRI has opened a new call to recruit Group Leaders. If you are interested in opening an RNA Biology and Infection lab, join us! Deadline: February 15. More info here 👇
01211