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Noah Houpt

@noahhoupt.bsky.social
459 followers 101 following 78 posts

Evolutionary ecology PhD candidate at Yale University, Patriots fan, and obligately bipedal lobe-finned fish. (he/him)

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Reposted by Noah Houpt
Kayla Stoy @kaylastoy.bsky.social · 28/09/2026
New paper with my postdoc advisor @wcratcliff.bsky.social. I love his creativity in putting together this video to summarize the work. Happy we had the chance to collaborate with each other!
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Vivek Mutalik @vivekmutalik.bsky.social · 25/09/2026
😮😮 Microbial community dynamics in a traditional Swiss mountain cheese over 142 years of cheesemaking: Current Biology www.cell.com/current-biol...
cell.com
Microbial community dynamics in a traditional Swiss mountain cheese over 142 years of cheesemaking
How did modernizing cheesemaking change the microbes inside the cheese? By sequencing preserved traditional Alpine cheese wheels spanning 142 years from a single Alpine dairy, Somerville et al. trace ...
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Ian Yen @ianyyen.bsky.social · 25/09/2026
I had a great time at this conference last year and now have the pleasure of helping organize the GRS. I would encourage colleagues to apply and spread the word!
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Noah Houpt @noahhoupt.bsky.social · 22/09/2026
*PLEASE RE-POST* Applications for the trainee-focussed GRS immediately preceding this meeting are also now open! We will begin accepting applicants on *January 15th, 2027*. We will expedite our review for applicants requiring Visas, so please submit ASAP. www.grc.org/microbial-po...
grc.org
2027 Microbial Population Biology (GRS) Seminar GRC
The 2027 Gordon Research Seminar on Microbial Population Biology (GRS) will be held in Andover, New Hampshire. Apply today to reserve your spot.
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Dmitri Petrov @petrovadmitri.bsky.social · 17/09/2026
We are searching for an Assistant Professor in Evolutionary Biology! Looking for colleagues asking fundamental questions relating to evolutionary processes and drivers of evolutionary patterns. If you think it is you, please do apply! And please repost. facultypositions.stanford.edu/jobs/assista...
facultypositions.stanford.edu
Assistant Professor in Evolutionary Biology - Stanford University, California, United States
The Department of Biology at Stanford University seeks applicants for a tenure-track Assistant Professor in Evolutionary Biology. A successful candidate will conduct research that asks fundamental que...
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Asher Leeks @asherleeks.bsky.social · 16/09/2026
Come work with @viromehunter.bsky.social and myself at UBC! We have a postdoctoral position available for someone with an interest in bioinformatics and genomics, using sociovirology to understand disease dynamics in plant viruses. Advert: ppvlab.sites.olt.ubc.ca/files/2026/0...
ppvlab.sites.olt.ubc.ca
Browser Verification | UBC Cybersecurity
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Noah Houpt @noahhoupt.bsky.social · 25/08/2026
Thrilled to see this project officially published in ISMEJ! We showed that filamentous prophages frequently acquired repressor mutations causing hyperactivity which, in turn, drove the evolution of phage resistance with pleiotropic consequences. academic.oup.com/ismej/advanc...
academic.oup.com
Mutations in filamentous bacteriophages spark eco-evolutionary feedbacks in Pseudomonas aeruginosa
Abstract. Microbial populations strongly shape their environment, which can re-route adaptation toward organism-generated fitness optima. However, the cond
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Casey Dunn @caseywdunn.bsky.social · 25/08/2026
My new book, Phylogenetic Biology, is now published. Available online for free at dunnlab.org/phylogenetic... . Physical copies can be purchased at shop.lightningsource.com/b/085?params... or your favorite bookstore.
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Curtis Suttle @virosphere.bsky.social · 13/08/2026
Professor in Bacteriophage Biology & Evolution at the University of British Columbia (UBC). Closing date 1 October, with an expected start date no earlier than January 1, 2027, and a salary within the range of $200,000 to $270,000 per year. For details: ubc.wd10.myworkdayjobs.com/en-US/ubcfac...
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Carli Roush @phagephan.bsky.social · 12/08/2026
Thrilled to share my first paper out of grad school. We sequenced dental wastewater (yes, the stuff collected during teeth cleaning) and found previously unknown bacteriophages harbored in the human mouth. #phagesky #microsky 🧵 journals.asm.org/doi/10.1128/...
journals.asm.org
Dental wastewater reveals a hidden reservoir of oral bacteriophage diversity | Microbiology Spectrum
The human oral cavity contains a diverse microbial community, but the bacteriophages (phages) that infect many oral bacteria remain poorly characterized. This gap limits our understanding of how phage...
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Noah Houpt @noahhoupt.bsky.social · 06/08/2026
Super exciting for us phage therapy peeps. Lots of potential synergy between R-pyos and tailed phages for treating AMR Pseudomonas infections. Congrats Isaac and co-authors 🎉🎊
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Martina Dal Bello @martinadalbello.bsky.social · 17/07/2026
Excited that this is finally out, led by @jhuisman.bsky.social with Jeff Gore, combining experiments, theory and natural microbiome data! As salinity rises, diversity and individual species growth rates fall, yet community's overall growth stays robust: faster growers take over and keep it going.
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Takuji Usui | 薄井拓路 @usuitakuji.bsky.social · 03/07/2026
I am incredibly thrilled to announce that I will be starting as an Assistant Prof at Yale EEB in January 2027!! 🎉🎊 Stay tuned for student and postdoc openings, and please feel free to reach out to me if you are interested in eco-evo, range dynamics, species interactions, and global change! 🌐🌱🦠🧬
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Rees Kassen @reeskassen.bsky.social · 02/07/2026
What might a functional theory for the genetics of adaption look like? A first proposal: academic.oup.com/gbe/advance-... TL;DR : it’s all about rebalancing stress and growth.
academic.oup.com
Towards a functional genetics of adaptation: insights from microbial experimental evolution
Abstract. A general theory of adaptation is one that accounts for both the quantitative and functional properties of adaptive evolution. To date, the field
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Megan Behringer @megbehri.bsky.social · 30/06/2026
Our lab is looking to hire a RA to contribute to experimental evolution studies on anaerobic & aerotolerant bacteria! This is a great opportunity for recent grads looking to gain experience before perusing graduate training. Info at this link: ecsr.fa.us2.oraclecloud.com/hcmUI/Candid...
ecsr.fa.us2.oraclecloud.com
Research Technician - Term Biological Sciences - Behringer Lab
The TERM Research Technician is part of the Behringer Lab in the Department of Biological Sciences at Vanderbilt University and is a key member of the research team responsible for supporting the rese...
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Noah Houpt @noahhoupt.bsky.social · 25/06/2026
As a community we need to find the good use and bad use cases for genAI. I appreciate the @qedscience.bsky.social creators for attempting to make a useful tool that, IMO, has some good use cases and some bad use cases. I think the 1% thing is a VERY bad use case given all the known biases of genAI.
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Harmit Singh Malik @harmitmalik.bsky.social · 24/06/2026
I know it seems like a heretical idea, but one way to figure out if a preprint is really interesting (to you) is... to read the preprint. Then, in the spirit of sharing, send a note to authors: a simple kudos or a more detailed question. I do this a dozen times a year. It's awesome. Try it.
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Kayla King, Ph.D. @kayla-king.bsky.social · 24/06/2026
Evolutionary rescue in a phage community! New paper from former PhD student, Sam Greenrod, with brilliant colleague @craigmaclean.bsky.social : academic.oup.com/ismej/advanc...
academic.oup.com
Rapid adaptation accelerates competitive suppression in a parasite community
Abstract. Environmental stress leads to changes in community composition by altering competitive hierarchies and pushing taxa towards extinction. Parasites
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Noah Houpt @noahhoupt.bsky.social · 07/06/2026
Come by my poster (AEM 737) today from 3-4PM if you’re interested in phage therapy, Pseudomonas lung infections, phage training, or filamentous phages!
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Paul Turner Lab @paulturnerlab.bsky.social · 07/06/2026
Research Scientist from our lab @antanij.bsky.social presenting TODAY at 10.45 am in the Mechanism Discovery Hub (area near posters in the exhibit halls). #ASMicrobe
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Paul Turner Lab @paulturnerlab.bsky.social · 06/06/2026
Come see my former postdoc @cathyhernandez.bsky.social’s presentation on how prophages shape thermal performance in marine bacteria (room 147AB at 12:15PM). Cathy is now a professor at the University of South Carolina and is recruiting PhD students for Fall 2027!
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Asher Leeks @asherleeks.bsky.social · 14/04/2026
The Social Lives of Viruses is coming to Vancouver, Canada, from 4th-8th August 2026! This is a free meeting dedicated to all aspects of virus-virus interactions & evolution. To apply: socialviruses.zoology.ubc.ca @sociovirology.bsky.social #socialviruses #evosky #lovevirology #virosky
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Paul Turner Lab @paulturnerlab.bsky.social · 21/02/2026
Next one in a storm of preprints from our lab's amazing scientists.. Recent-ex-postdoc, #newPI @cathyhernandez.bsky.social studied thermal ecology of marine bacteria isolated near New Haven. Turns out, response of this bacterium to temperatures is shaped by prophages! #phagesky #microsky
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Noah Houpt @noahhoupt.bsky.social · 21/02/2026
Check out the latest from @cathyhernandez.bsky.social, where she shows that prophage activity underlies intraspecific variation in thermal tolerance AND evolutionary rescue in response to extreme temperature challenge. This is one for prophage peeps and climate change peeps.
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Megan Behringer @megbehri.bsky.social · 13/02/2026
Excited to share this new Preprint from our lab led by PhD Candidate Carl Stone (defending Tuesday). Here we present a framework for longitudinal rbTn-Seq and apply it to the Microbial extended growth curve to resolve the fitness seascape through growth, death, and long-term stationary phase!
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 23/01/2026
Mutations in filamentous bacteriophages spark eco-evolutionary feedbacks in Pseudomonas aeruginosa www.biorxiv.org/content/10.64898/20…
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bioRxivpreprint @biorxivpreprint.bsky.social · 23/01/2026
Mutations in filamentous bacteriophages spark eco-evolutionary feedbacks in Pseudomonas aeruginosa www.biorxiv.org/content/10.64898/20…
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Noah Houpt @noahhoupt.bsky.social · 23/01/2026
Interested in eco-evolutionary feedbacks? Microbial experimental evolution? Pleiotropy? Filamentous phages?? Check out our latest preprint, now up on BioRxiv! biorxiv.org/content/10.6... For a quick summary, peep the thread below...🧵 (1/10)
biorxiv.org
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Noah Houpt @noahhoupt.bsky.social · 08/10/2025
Cathy is one of the most brilliant, supportive, and thoughtful scientists and mentors I’ve had the privilege of working with. I would recommend working with Cathy to any student interested in bacteria-phage interactions. Congrats, Cathy!! We will miss you dearly.
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Asher Leeks @asherleeks.bsky.social · 07/10/2025
I gave a talk last year at TEDxNewEngland aimed at introducing the idea of viral sociality to a general audience, including implications for evolution & virology. Video now available online below. #socialviruses #evosky #virosky 🧪
youtube.com
The social lives of viruses | Asher Leeks | TEDxNewEngland
YouTube video by TEDx Talks
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Martina Dal Bello @martinadalbello.bsky.social · 23/07/2025
📢 We're seeking a postdoc to work on a project funded by HFSP @hfspo.bsky.social at the intersection of bacterial physiology, ecology and evolution. You can find more details about the project, the position, and how to apply here www.dalbellolab.com/hfsp-project! #bacteria #ecosky #MevoSky #microSky
dalbellolab.com
HFSP project — dal bello lab
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Kiseok (Keith) Lee @kiseokmicro.bsky.social · 16/07/2025
Published in Nature today! Here, we sought to systematically ask how natural community's metabolism changes with the environment. A simple consumer-resource model can predict N-cycle metabolism (nitrate use) and, more importantly, the mechanism behind its change. www.nature.com/articles/s41...
nature.com
Functional regimes define soil microbiome response to environmental change - Nature
Experimental perturbation of soil pH leads to a generalizable model of the soil microcosm comprising three functional regimes with distinct mechanisms linking environmental change to metabolite dynami...
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Noah Houpt @noahhoupt.bsky.social · 12/07/2025
Excited to get to work on GRS 2027 with @duhitasant.bsky.social!! Hit me up here or via email if you have any feedback or ideas for the next Micro Pop Biol GRS!
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Laura Suttenfield @lcatherines.bsky.social · 12/07/2025
Thanks especially to fearless leaders @reeskassen.bsky.social and Christina Burch, and to @drhhnz.bsky.social and @wcratcliff.bsky.social. It was a great to see the process that led up to an amazing 40th anniversary conference 🎉🍰
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Dave Baltrus 🦦 @surtlab.bsky.social · 11/07/2025
Super stoked and honored to be elected as co-chair along with @ksbakes.bsky.social for the Microbial Population Biology 2029 GRC! And looking forward to a great 2027 meeting in Andover chaired by @drhhnz.bsky.social and @wcratcliff.bsky.social !
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Noah Houpt @noahhoupt.bsky.social · 23/06/2025
#ASMicrobe day 3 vibes
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Cathy Hernandez @cathyhernandez.bsky.social · 20/06/2025
For #ASMicrobe folks - looking forward to a busy phage day on Sunday!
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Noah Houpt @noahhoupt.bsky.social · 20/06/2025
Come check out my poster tomorrow at #ASMicrobe in the E&EB section! We found that repressor mutations in Pf prophages sparked a coevolutionary dynamic that resulted in loss of twitch motility and susceptibility to virulent pilus-targeting phage. Would love to chat about all things phage :).
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Noah Houpt @noahhoupt.bsky.social · 28/01/2025
apnews.com/article/dona...
apnews.com
Federal judge temporarily blocks Trump administration freeze on federal grants and loans
A federal judge has temporarily blocked a Trump administration freeze on federal grants and loans that could total trillions of dollars. U.S. District Judge Loren L.
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Noah Houpt @noahhoupt.bsky.social · 28/01/2025
www.insidehighered.com/news/governm...
insidehighered.com
NSF cancels grant reviews to comply with Trump EOs
Scheduled review panels for National Science Foundation grant applications are on pause until Feb. 1. Some researchers believe the pause may be connected to the new administration’s anti-DEI crusade.
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Noah Houpt @noahhoupt.bsky.social · 28/01/2025
www.npr.org/sections/sho...
npr.org
National Science Foundation freezes grant review in response to Trump executive orders
The National Science Foundation has canceled all grant review panels this week. It's unclear how long the pause could last.
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Will Ratcliff @wcratcliff.bsky.social · 10/01/2025
Yo folks, it is time to apply to *hands down the best conference in microbial evolution and ecology*: www.grc.org/microbial-po... We begin reviewing apps in 10 days! We strongly encourage everyone to give a poster. DM w/ questions.
grc.org
2025 Microbial Population Biology Conference GRC
The 2025 Gordon Research Conference on Microbial Population Biology will be held in Andover, New Hampshire. Apply today to reserve your spot.
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Noah Houpt @noahhoupt.bsky.social · 17/12/2024
Former @paulturnerlab.bsky.social postdoc @norapyenson.bsky.social featured Yale News today! Check out this overview on Nora's work or the full paper out in @science.org news.yale.edu/2024/12/16/n... www.science.org/doi/10.1126/...
news.yale.edu
New insights into the vast diversity of nature’s most abundant viruses
A new Yale-led study offers insights into the “social lives” of viruses — findings that might advance  the fight against antibiotic resistance.
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Nora Pyenson @norapyenson.bsky.social · 12/12/2024
Is it “winner-takes all” when the simplest living things compete? Check out my fresh publication on phage coexistence in Science and a thread below🧵 www.science.org/doi/10.1126/...
science.org
Diverse phage communities are maintained stably on a clonal bacterial host
Bacteriophages are the most abundant and phylogenetically diverse biological entities on Earth, yet the ecological mechanisms that sustain this extraordinary diversity remain unclear. In this study, w...
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Honour McCann @honour.bsky.social · 20/11/2024
The UCSB KITP QBio course on mobile elements was amazing 🩵 With excellent projects led by @paulturnerlab.bsky.social, Roberto Kolter, Joanne Emerson, Richard Neher, @erikvannimwegen.bsky.social, Ben Good (+ me). Course began with a wetlab bootcamp, Dallas Mould demonstrating the first experiments..
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Noah Houpt @noahhoupt.bsky.social · 08/05/2024
Check out the latest edition of Rees’ book, which provides an exhaustive synthesis of how microbial experimental evolution studies have been applied to answer some of the big questions in ecology and evolution! A must read for researchers starting out in MEE!
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Noah Houpt @noahhoupt.bsky.social · 03/04/2024
I still need them. I still feed them. Now they’re 64 (days old).
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Noah Houpt @noahhoupt.bsky.social · 06/12/2023
Check out this amazing new paper led by PhD student Helen Stone where she shows that pseudoviruses studded with spike proteins from three different SARS-CoV-2 strains can enter cells expressing dolphin and beluga whale ace2! royalsocietypublishing.org/doi/full/10....
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Tatum Mortimer @tatumdmortimer.bsky.social · 09/11/2023
Not an in person workshop, but ASM has recordings of their genomics webinars here: asm.org/Webinars/tra... I've also been working on a list of commonly used bacterial population genomics software if that's at all useful: mortimerlab.com/microbial_ge...
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Noah Houpt @noahhoupt.bsky.social · 09/11/2023
Dear microbial peeps, Looking for a workshop that will give me a solid foundation in analyzing bacterial WGS and population sequencing data. I have no prior experience doing this. Are y'all aware of any good workshops (esp. in North America) for gaining these skills? Thanks!
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