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Duhita Sant

@duhitasant.bsky.social
652 followers 205 following 19 posts

Postdoc at @RutgersCABM | Ecology and evolution of microbial communities | qevomicrolab.org

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Reposted by Duhita Sant
Noah Houpt @noahhoupt.bsky.social · 22/09/2026
My co-chair @duhitasant.bsky.social and I are coordinating with the GRC chairs to ensure space for our GRS attendees in the main conference, which is even further incentive to apply! If you have any questions, comments, concerns, please let us know. See you all there!
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Noah Houpt @noahhoupt.bsky.social · 22/09/2026
For those who don't know, the GRS is a mini-meeting for graduate students and postdocs working in microbial population biology. At this meeting we will build our professional networks, share our research, and hear from our amazing keynote speaker, @bkoskella.bsky.social!
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Noah Houpt @noahhoupt.bsky.social · 22/09/2026
*PLEASE RE-POST* Applications for the trainee-focussed GRS immediately preceding this meeting are also now open! We will begin accepting applicants on *January 15th, 2027*. We will expedite our review for applicants requiring Visas, so please submit ASAP. www.grc.org/microbial-po...
grc.org
2027 Microbial Population Biology (GRS) Seminar GRC
The 2027 Gordon Research Seminar on Microbial Population Biology (GRS) will be held in Andover, New Hampshire. Apply today to reserve your spot.
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Snorre Sulheim @sulheim.bsky.social · 18/09/2026
Finally online! Cross-feeding enables robust coexistence between four bacterial species | PNAS www.pnas.org/doi/10.1073/... #microsky
pnas.org
Cross-feeding enables robust coexistence between four bacterial species | PNAS
Resource supply is generally considered a dominant driver of microbial diversity. Here, using a four-species bacterial consortium, we asked whether...
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Duhita Sant @duhitasant.bsky.social · 17/09/2026
As an early career researcher, some of my most valuable scientific discussions began at this meeting 🦠 Applications are already rolling in, so trainees, get yours in early!
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 14/09/2026
What a lovely email to receive this morning. Our perspective paper on the importance of microbial interactions for antibiotic resistance evolution was one of the most viewed papers in Microbiology (the society journal) in August. Shameless plug here 😉: www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Microbial interactions as key players shaping the emergence and spread of de novo resistance mutations
Antibiotic resistance and the microbiome are two of the most prominent and highly active research areas currently in microbiology. However, these studies are commonly siloed. Research into antibiotic ...
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Kayla King, Ph.D. @kayla-king.bsky.social · 24/06/2026
Evolutionary rescue in a phage community! New paper from former PhD student, Sam Greenrod, with brilliant colleague @craigmaclean.bsky.social : academic.oup.com/ismej/advanc...
academic.oup.com
Rapid adaptation accelerates competitive suppression in a parasite community
Abstract. Environmental stress leads to changes in community composition by altering competitive hierarchies and pushing taxa towards extinction. Parasites
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Jake Barber @jakenbarber.bsky.social · 11/06/2026
This has finally been published in Nature Communications! Please check it out if you are interested in population genetics, antibiotic resistance and mutation biased adaptation :) www.nature.com/articles/s41...
nature.com
Mutation-biased adaptation is consequential even in large bacterial populations - Nature Communications
Adaptation is assumed to proceed by survival of the fittest. The study shows that mutation bias can drive adaptation via survival of the likeliest, steering bacteria along divergent paths to resistanc...
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Vaughn Cooper @vscooper.micropopbio.org · 16/06/2026
Rather: small N + strong selection = beneficial mutations linked to DNA repair mutants that ⬆️ mutation supply We tried to be accurate here @catarmbruster.bsky.social www.cell.com/cell-reports... Grateful that evolutionary biology is being used in microbial pathogenesis, now need more pop-gen
cell.com
Adaptation and genomic erosion in fragmented Pseudomonas aeruginosa populations in the sinuses of people with cystic fibrosis
Armbruster et al. find that infection-site biogeography impacts evolution of the opportunistic pathogen, Pseudomonas aeruginosa. In the sinuses of adults with cystic fibrosis, P. aeruginosa residing i...
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Meike Wortel @meikewortel.bsky.social · 15/05/2026
How do human gut microbiome species interact? Can we explain their communities and invasion patterns form environmental factors alone? PhD students Pim van Leeuwen and Pietro Gadaleta set out to test this! TLDR: Indeed, for the 10 common species we can! Paper out in mSystems: doi.org/10.1128/msys...
doi.org
Environmentally mediated interactions predict community assembly and invasion success in a gut microbiota synthetic community | mSystems
The stability of the human gut microbiome is crucial for host health, with opportunistic pathogen invasions causing diseases and healthy strain replacements needed for recovery. The microbiota’s compl...
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Glen Dsouza @nonresidentdesi.bsky.social · 04/05/2026
Simons Graduate Fellowships in Ecology & Evolution are open! Our lab is open to hosting applicants. We link cell-level decision making to ecological outcomes and evolutionary trajectories in microbiomes. Interested or know someone who might be? Let's chat! www.simonsfoundation.org/grant/simons...
simonsfoundation.org
Simons Graduate Fellowships in Ecology and Evolution
The purpose of these awards is to provide support for students entering U.S.-based Ph.D. programs with a plan to perform research in ecology and evolution. While we will consider all projects in ecolo...
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Sergey Kryazhimskiy @skryazhi.bsky.social · 10/04/2026
It looks like there will be an open postdoc position in my lab soon. I'll be looking for someone with substantial wet-lab experience in microbiology / microbial ecology / evolution / physiology. If everything goes well, an ad will be coming. But if you know someone, ask them to reach out already.
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Vaughn Cooper @vscooper.micropopbio.org · 07/04/2026
We should all do our part to join Brian in ending genetics essentialism. I give a lecture at Pitt to the new PhD students entitled "There is no such thing as wild-type." I blogged about this years ago and it's part of my teaching statement. Long road, team effort✊🏻 micropopbio.org/blog/2018-07...
micropopbio.org
The root of pan-adaptationism?
There’s been a fair bit of recent discussion about why most biologists are (uncritically) adaptationists. I don’t dispute this but think it’s worth reconsidering why. Some have argued that this is bec...
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Sergey Kryazhimskiy @skryazhi.bsky.social · 12/03/2026
Nice to see this published at @PLoS Comp Bio. Big improvements after peer review and important input from @gsherloc.bsky.social! Hopefully, this tool will be helpful for those interested in using barcodes for detecting new beneficial mutations. journals.plos.org/ploscompbiol...
journals.plos.org
Putting BASIL in a BLT: A Bayesian filtering method for estimating the fitness effects of nascent adaptive mutations
Author summary Beneficial mutations are rare but they are the ultimate drivers of evolution by natural selection. Evolutionary biologists seek to understand how many beneficial mutations an organism h...
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Nandita Garud @nanditagarud.bsky.social · 12/02/2026
I am seeking a postdoc to join my group at UCLA -- ideally the candidate would have some experience in either population genetics or microbes/microbiome (computational background needed). We have a range of projects and are happy to tailer to your interests. Please dm/email me if interested.
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Noah Houpt @noahhoupt.bsky.social · 23/01/2026
Interested in eco-evolutionary feedbacks? Microbial experimental evolution? Pleiotropy? Filamentous phages?? Check out our latest preprint, now up on BioRxiv! biorxiv.org/content/10.6... For a quick summary, peep the thread below...🧵 (1/10)
biorxiv.org
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Duhita Sant @duhitasant.bsky.social · 15/01/2026
Moving across countries as an Indian researcher hasn’t been easy, but it’s been deeply transformative. I wrote about my journey and why mobility is so important in science. Grateful to be part of this initiative by @cp-trendsmicrobiol.bsky.social read on and check out the full series as well!
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Mike McDonald @mikejmcd.bsky.social · 15/01/2026
Come to Taipei! Registration Free, Closes Jan 20th. Generous Travel Grants Available. EMBO Workshop integrating perspectives from molecular evolution, genomics, ecology, and systems biology to highlight how interactions across organisms drive adaptation and innovation. @ishengtsai.bsky.social
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ISME - International Society for Microbial Ecology @isme-microbes.bsky.social · 24/12/2025
As we close the year, the ISME Early Career Scientist Committee is glad to spotlight @duhitasant.bsky.social , Postdoctoral Researcher at Rutgers University, and her paper “Eco-evolutionary robustness of wild bacterial communities to experimental perturbation”. doi.org/10.1093/isme... (1/2)
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Alexander Harms @aharms485.bsky.social · 20/11/2025
🚨Preprint alert - this is a big one! We transfer the revolutionary power of TnSeq to bacteriophages. Our HIDEN-SEQ links the "dark matter" genes of your favorite phage to any selectable phenotype, guiding the path from fun observations to molecular mechanisms. A thread 1/8
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Erik Bakkeren @erikbakkeren.bsky.social · 07/11/2025
Can we leverage bacterial competition for targeted replacement of harmful strains? Maybe! Our recent piece in @natmicrobiol.nature.com provides a theoretical framework and a set of experiments to show what it might take: www.nature.com/articles/s41...
nature.com
Strain displacement in microbiomes via ecological competition - Nature Microbiology
Mathematical modelling and experimental tests reveal principles that govern displacement of a resident strain by an invader in microbial communities.
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Tim Barraclough @timbarra.bsky.social · 20/10/2025
I'm advertising a PhD project on the evolution of horizontal transfer. Interested in this or other topics in evolution and species diversity, please get in touch. www.findaphd.com/phds/project...
findaphd.com
The evolutionary costs and benefits of horizontal gene transfer in eukaryotes (TB01) at University of Oxford on FindAPhD.com
PhD Project - The evolutionary costs and benefits of horizontal gene transfer in eukaryotes (TB01) at University of Oxford, listed on FindAPhD.com
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The Royal Society @royalsociety.org · 29/08/2025
The Royal Society's Francis Crick Medal and Lecture 2026 is awarded to Professor Kayla King for contributions to the fields of evolutionary biology and genetics of infectious disease. #RSMedals royalsociety.org/medals-and-prizes/…
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Trends in Microbiology @cp-trendsmicrobiol.bsky.social · 31/08/2025
Scientific mobility in microbiology – 8
dlvr.it
Scientific mobility in microbiology – 8
Jingdi Li
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Michael Manhart @michaelmanhart.bsky.social · 02/09/2025
I am recruiting a Ph.D. student in microbial ecology, evolution, and systems biology for fall 2026. Please share! Details: qevomicrolab.org/Documents/Gr... Apply by October 1 here: forms.gle/38pPS1Ky84HB...
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UBC Science @science.ubc.ca · 27/08/2025
Congratulations to Dr. Kayla King who was awarded the 2025 Francis Crick Medal & Lecture by the Royal Society for contributions to the fields of evolutionary biology & genetics of infectious disease. @zoology.ubc.ca @ubcmicroimmuno.bsky.social @kayla-king.bsky.social @royalsociety.org bit.ly/4lGJrWB
bit.ly
Dr. Kayla King awarded Royal Society’s Francis Crick Medal
Evolutionary biologist Dr. Kayla King has been awarded the 2025 Francis Crick Medal and Lecture by the Royal Society of London for contributions to the fields of evolutionary biology and genetics of i...
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Tami Lieberman @contaminatedsci.bsky.social · 15/08/2025
Our high-precision metagenomic strain caller, PHLAME, is now published in Cell Reports!! www.cell.com/cell-reports... PHLAME works on tough sample types -- including those with coexisting strains of a species and low depth.
cell.com
Intraspecies associations from strain-rich metagenome samples
Qu et al. present PHLAME, a method to analyze strain composition in metagenomic samples where many strains of the same species coexist. Using PHLAME, they show relationships between strain abundances ...
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Tim Barraclough @timbarra.bsky.social · 01/08/2025
Our new paper on experimental evolution in wild tree-holes -Eco-evolutionary robustness of wild bacterial communities to experimental perturbation #ISMEJournal @duhitasant.bsky.social Tom Smith Edgar Wong Juli Cohen @kayla-king.bsky.social Tom Bell academic.oup.com/ismej/advanc...
academic.oup.com
Eco-evolutionary robustness of wild bacterial communities to experimental perturbation
Abstract. Most knowledge about bacterial evolution and ecological interactions comes from laboratory studies. One difference between the wild and most labo
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Ákos T Kovács @evolvedbiofilm.bsky.social · 24/07/2025
Eco-evolutionary robustness of wild bacterial communities to experimental perturbation #ISMEJournal by @duhitasant.bsky.social et al from @timbarra.bsky.social with Tom Bell, @kayla-king.bsky.social academic.oup.com/ismej/advanc...
academic.oup.com
Eco-evolutionary robustness of wild bacterial communities to experimental perturbation
Abstract. Most knowledge about bacterial evolution and ecological interactions comes from laboratory studies. One difference between the wild and most labo
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Tom Smith @ecologicaltom.bsky.social · 23/07/2025
Great to have our new tree hole paper out!
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Duhita Sant @duhitasant.bsky.social · 22/07/2025
🚨Fresh out of press! How do wild bacterial communities respond to environmental perturbations like liming? We experimentally evolved them to find out! academic.oup.com/ismej/articl...
academic.oup.com
Eco-evolutionary robustness of wild bacterial communities to experimental perturbation
Abstract. Most knowledge about bacterial evolution and ecological interactions comes from laboratory studies. One difference between the wild and most labo
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Tami Lieberman @contaminatedsci.bsky.social · 22/07/2025
We are on the lookout for postdocs for two different projects at the intersection of ecology, evolution, and the human microbiome. See thread for more information and reach out!
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Nandita Garud @nanditagarud.bsky.social · 22/07/2025
I am seeking a postdoc for my group at UCLA. We work at the intersection of population genetics x microbiome (garud.eeb.ucla.edu). If interested, please message me!
garud.eeb.ucla.edu
Garud Lab
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Joao Ascensao @joaoascensao.bsky.social · 21/07/2025
New review article with @mmdesai.bsky.social is out today! Grateful for the opportunity to contribute something we hope will serve the community well
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Rees Kassen @reeskassen.bsky.social · 13/07/2025
Congrats to both of you. The GRS is in good hands.
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Noah Houpt @noahhoupt.bsky.social · 12/07/2025
Excited to get to work on GRS 2027 with @duhitasant.bsky.social!! Hit me up here or via email if you have any feedback or ideas for the next Micro Pop Biol GRS!
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Duhita Sant @duhitasant.bsky.social · 12/07/2025
Thrilled to have been elected as GRS co-chair along with @noahhoupt.bsky.social Looking forward to the 2027 meeting! #GRCMicroPop
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Laura Suttenfield @lcatherines.bsky.social · 12/07/2025
Still winding down from the Microbial Population Biology GRS/GRC!🦠 It was a great experience to be GRS co-chair with @mikeblazanin.bsky.social, and congrats to the newly-elected GRS chairs @noahhoupt.bsky.social and @duhitasant.bsky.social!💃 #GRCMicroPop #MicroSky
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Heather Hendrickson @drhhnz.bsky.social · 10/07/2025
This week I am at the #GRC meeting for Microbial Population Biology. It is my favourite meeting. There is nothing like these small meetings for gathering a community together, and I learn a huge amount here every time. Here is to 40 more years of this incredible conference!
A celebratory cake at the 40th anniversary of the Gordon conference that says “ 40 years Micro Pop Bio Answering big questions with little things” .
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Meike Wortel @meikewortel.bsky.social · 05/07/2025
Postdoc in Experimental Evolution available at the University of Alberta with collaborators in our exciting HFSP project on predicting evolution in Candida communities! I Apply this month 🧫🥼📈 apps.ualberta.ca/careers/post...
apps.ualberta.ca
Postdoctoral Researcher in Experimental Evolution - Careers@UAlberta.ca
University of Alberta: Careers@UAlberta.ca
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Mike Blazanin @mikeblazanin.bsky.social · 03/07/2025
Looking forward to seeing everyone, new and old, at the Microbial Population Biology GRS + GRC in just a couple days! go.bsky.app/GGxRjzC
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Tami Lieberman @contaminatedsci.bsky.social · 30/06/2025
Our paper demonstrating that within-species warfare interactions are ecologically important on human skin is now published in Nature Micro! www.nature.com/articles/s41...
nature.com
Intraspecies warfare restricts strain coexistence in human skin microbiomes - Nature Microbiology
About 15,000 pairwise interactions within S. epidermidis from 18 people in 6 families reveal the antagonism and molecular trade-offs that shape the skin microbiota.
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Jake Barber @jakenbarber.bsky.social · 20/06/2025
New pre-print is finally out! This is the first project from my postdoc with Alejandro Couce, looking at how mutation-bias influences adaptation across large population sizes, and how this may have real world consequences. Really happy with how this turned out :) www.biorxiv.org/content/10.1...
biorxiv.org
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Duhita Sant @duhitasant.bsky.social · 21/05/2025
Excited to share that I’ve been awarded the prestigious 2025 Peggy Cotter Award from @njmicrobe.bsky.social (NJ branch of @asm.org ) and the Career Development Grant for Postdoctoral Women from @asm.org!
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Glen Dsouza @nonresidentdesi.bsky.social · 21/04/2025
We have openings for motivated and curious individuals to join our team @arizonastateuni.bsky.social microbialeco.systems #MicroSky
microbialeco.systems
µscale dynamics in microbial ecosystems
Our research develops general principles underlying the functioning of microbial communities by studying model systems and natural marine communities from disparate environments.
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Ignacio J. Melero-Jiménez @ignamelero.bsky.social · 14/04/2025
1/ In our new paper, we explored whether obligate mutualisms can survive abrupt stress via evolutionary rescue. We found that evolutionary rescue is possible—but it comes at the cost of mutualism. @jfriedman.bsky.social #microsky #evosky #mevosky
nature.com
Mutualism breakdown underpins evolutionary rescue in an obligate cross-feeding bacterial consortium - Nature Communications
Rapid genetic adaptation to environmental change, or evolutionary rescue, can be constrained by a less adaptable mutualistic partner. Here, the authors explore evolutionary rescue in an obligate mutua...
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Nora Pyenson @norapyenson.bsky.social · 12/12/2024
Is it “winner-takes all” when the simplest living things compete? Check out my fresh publication on phage coexistence in Science and a thread below🧵 www.science.org/doi/10.1126/...
science.org
Diverse phage communities are maintained stably on a clonal bacterial host
Bacteriophages are the most abundant and phylogenetically diverse biological entities on Earth, yet the ecological mechanisms that sustain this extraordinary diversity remain unclear. In this study, w...
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Duhita Sant @duhitasant.bsky.social · 22/11/2024
Abstracts for ASM Microbe 2025 are now open (asm.org/Events/ASM-M...) I’m excited to announce that I’ll be convening a session under the EEB track, and we’re thrilled to have the amazing @petrovadmitri.bsky.social and @deepaagashe.bsky.social speaking in the session.
asm.org
ASM Microbe | Abstracts
ASM Microbe 2025 showcases the best microbial sciences in the world and provides a one-of-a-kind forum to explore everything from basic microbiology to translation and application.
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Tim Barraclough @timbarra.bsky.social · 22/11/2024
PhD opportunity: Bdelloid rotifers are strange animals with no males and amazing stress tolerance. 10% of their genes came from bacteria, fungi via HGT, including antimicrobial genes that are unique in animals. Find out how/why and discover new antimicrobials too! www.findaphd.com/phds/project...
A bdelloid rotifer, Rotaria macrura
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Mike Blazanin @mikeblazanin.bsky.social · 14/11/2024
Applications are open for the Microbial Population Biology GRS and GRC! The GRS is a fun day for grad students and postdocs to network before the full GRC starts, and is co-chaired this year by me and Laura Suttenfield Get your applications in by Jan 15! #evosky 🦠🧪 www.grc.org/microbial-po...
grc.org
2025 Microbial Population Biology (GRS) Seminar GRC
The 2025 Gordon Research Seminar on Microbial Population Biology (GRS) will be held in Andover, New Hampshire. Apply today to reserve your spot.
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