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Matthew McCallum

@mattmccallum.bsky.social
339 followers 167 following 6 posts

Assistant Professor in LMP at the University of Toronto Structural biology - Protein design - Microbiology - Virology - Evolution (he/him)

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Reposted by Matthew McCallum
Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
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Alex Merz 🇺🇸🇨🇦🇺🇦 @merz.bsky.social · 31/08/2026
Our new paper with @ckellison.bsky.social. is finally out! We identify an ancient and widely conserved mechanism that promotes initiation of fiber polymerization in type IV pili and type II secretion systems.
pnas.org
β-strand addition within tip initiation complexes licenses assembly of diverse type IV filaments | PNAS
PilC/PilY1 proteins are tip-located adhesins of type IV pili (T4P) that are critical for T4P function in diverse behaviors including twitching moti...
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Nature @nature.com · 12/08/2026
Three studies represent an important advance towards a vaccine that protects against HIV go.nature.com/4fUczdz
go.nature.com
HIV vaccines guide rare immune cells to make broadly neutralizing antibodies
Three studies in non-human primates show that strategically designed vaccines could prime a population of B cells to produce effective antibodies against HIV.
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Reposted by Matthew McCallum
George O'Toole (he/him/his) @geiselbiofilm.bsky.social · 23/06/2026
Our Dept of Microbiology & Immunology @Geisel School of Medicine @Dartmouth has an opening for an Assistant Professor. Looking for programs bridging multiple areas in Micro & Immuno. A great place to be! Programs: www.M2P2.org www.dartmouthbiofilm.org Job ad: apply.interfolio.com/187637
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Alex Merz 🇺🇸🇨🇦🇺🇦 @merz.bsky.social · 11/06/2026
Reminder — UW #Microbiology has an open search for an Assistant Professor, focusing on fundamental problems in #bacteriology! If you or someone you know would be suitable, here's the ad: apply.interfolio.com/185622
Screenshot of the job listing linked in full above
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Matthew McCallum @mattmccallum.bsky.social · 29/04/2026
Excited to share this paper from my time in the Veesler lab. I had some fun designing another “frankenprotein”, and it turns out it’s pretty useful too!
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Reposted by Matthew McCallum
Joost Snijder @joostsnijder.bsky.social · 30/03/2026
Structure of SARS-CoV-2 spike in complex with its co-receptor the neuronal cell adhesion protein contactin1 www.biorxiv.org/content/10.6... Check out our new preprint. Cool structure by Sabrina Krepel with Bert Janssen. Thanks to @danielhurdiss.bsky.social @utrechtvirology.bsky.social #covid #pais
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 17/03/2026
AlphaFold database has entered the era of complexes. Together with NVIDIA, DeepMind and EBI, we use ColabFold, OpenFold and MMseqs2-GPU to predict ~31 million complexes (homo & hetro-dimers) resulting in 1.8 million high-quality predictions 📄 research.nvidia.com/labs/dbr/ass... 🌐 alphafold.ebi.ac.uk
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Matt Slein @mattslein.bsky.social · 09/03/2026
The final portion of my PhD thesis is now live! Here we describe that both neutralziing and non neutralizing Abs targeting HSV gB require Fc effector functions to protect neonatal mice from infection. Thanks to all my coauthors, collaborators and thesis advisors! journals.asm.org/doi/10.1128/...
journals.asm.org
Antibodies targeting HSV glycoprotein B require effector functions to protect neonatal mice | Journal of Virology
Antibodies represent promising drugs for the prevention and treatment of viral infections, especially when efficacious vaccines are unavailable. Determining the dominant mechanisms of Ab-mediated prot...
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Nature Portfolio @natureportfolio.nature.com · 19/02/2026
Vaccination with two doses of recombinant zoster vaccine is associated with a 51 percent reduction in the risk of dementia in adults over 65 years, reports a study published in Nature Communications. go.nature.com/4aHg6rM 🧪
The image presents a study design, with sections labelled 'a' to 'd'. Section a outlines primary and secondary study objectives: association between two doses of RZV and reduced dementia risk in adults over 65. Sections b and d show KPSC EHR search flow, RZV vaccination status.
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cryoEM papers @cryoempapers.bsky.social · 14/02/2026
Analysis of the heterogenous structural states of the hexameric ATPase PilU of the Type IV pili from Vibrio cholerae pubmed.ncbi.nlm.nih.gov/41676508/ #cryoEM
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cryoEM papers @cryoempapers.bsky.social · 03/02/2026
A broadly protective antibody targeting gammaherpesvirus gB pubmed.ncbi.nlm.nih.gov/41629701/ #cryoEM
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Matthew McCallum @mattmccallum.bsky.social · 21/01/2026
Excited to share that I’ll be starting as an Assistant Professor in LMP at the University of Toronto this March! I’m launching a new lab at the intersection of protein design and cryoEM, building something exciting, open, and collaborative. More soon!
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cryoEM papers @cryoempapers.bsky.social · 09/01/2026
Monoclonal neutralizing antibodies elicited by infection with Kaposi sarcoma-associated herpesvirus reveal critical sites of vulnerability on gH/gL pubmed.ncbi.nlm.nih.gov/41499715/ #cryoEM
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Kelvin Lau @klausenhauser on 🙅‍♂️🐘🪡 @klausenhauser.bsky.social · 04/12/2025
Most protein design binders look the same, bundles of alpha helices or clearly a VHH. But the strategies in getting there are getting more diverse. The pipelines that humans are deciding to use are super interesting. proteinbase.com/competitions...
proteinbase.com
Nipah Binder Competition
Design a protein capable of neutralizing the Nipah virus, a pathogen with up to 75% mortality rate and high pandemic potential, currently lacking effective treatments.
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Reposted by Matthew McCallum
Veesler lab @veeslerlab.bsky.social · 12/11/2025
Delighted to share the peer-reviewed version of our article describing a prefusion-stabilized MARV GP vaccine immunogen and a best-in-class MARV neutralizing and protective antibody! Led by @aminaddetia.bsky.social with @virbiotechnology.bsky.social @hhmi.org www.nature.com/articles/s41...
nature.com
Potent neutralization of Marburg virus by a vaccine-elicited antibody - Nature
Nature - Potent neutralization of Marburg virus by a vaccine-elicited antibody
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Veesler lab @veeslerlab.bsky.social · 21/10/2025
Our latest work on #COVID immunity and imprinting in humans. Led by Ale Tortorici and Kaiti Sprouse with @aminaddetia.bsky.social and several others! www.biorxiv.org/content/10.1...
biorxiv.org
Repeated COVID-19 vaccine boosters elicit variant-specific memory B cells in humans
The first exposure to a pathogen or an antigen profoundly impacts immune responses upon subsequent encounter with related pathogens. This immune imprinting explains that infection or vaccination with ...
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Lori L. Burrows @dr-lori-burrows.bsky.social · 07/10/2025
New paper! Specific PilA and PilY1 sequences make PilU dispensable for T4P-dependent twitching motility in P. aeruginosa. However, most suppressors still had high cAMP levels from loss of PilU, showing that motility and surface sensing responses can be uncoupled.🧐 ⏩ journals.asm.org/doi/10.1128/...
journals.asm.org
Separation of Pseudomonas aeruginosa type IV pilus-dependent twitching motility and surface-sensing responses | mBio
The ability of bacteria to sense and respond to contact with surfaces is important for triggering changes in secondary messenger levels and gene expression, leading to the formation of biofilms and in...
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George O'Toole (he/him/his) @geiselbiofilm.bsky.social · 07/10/2025
Excited to be part of this collaboration with the Burrows lab exploring twitching and surface surface sensing by P. aeruginosa. This work further delineates a role for the T4P motor proteins and pili for surface sensing. journals.asm.org/doi/10.1128/... @asm.org
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Veesler lab @veeslerlab.bsky.social · 18/05/2025
Outbreaks of Marburg virus (MARV) disease have been increasingly more frequent recently. Here we describe a prefusion-stabilized MARV GP and a best-in-class MARV neutralizing antibody! Led by @aminaddetia.bsky.social with @virbiotechnology.bsky.social @hhmi.org www.biorxiv.org/content/10.1...
biorxiv.org
Potent neutralization of Marburg virus by a vaccine-elicited monoclonal antibody
Marburg virus (MARV) is a filovirus that causes a severe and often lethal hemorrhagic fever. Despite the increasing frequency of MARV outbreaks, no vaccines or therapeutics are licensed for use in hum...
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Veesler lab @veeslerlab.bsky.social · 14/05/2025
Delighted to share our most recent work on designing broadly protective sarbecovirus vaccines and defining the path forward for other coronaviruses. Led by @aminaddetia.bsky.social @hhmi.org www.biorxiv.org/content/10.1...
biorxiv.org
Phylogeny-driven design of broadly protective sarbecovirus receptor-binding domain nanoparticle vaccines
Vaccines against emerging SARS-CoV-2 variants and sarbecoviruses with pandemic potential must elicit a robust humoral immune response in a population imprinted with the SARS-CoV-2 spike (S) protein. H...
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Ian Yen @ianyyen.bsky.social · 24/04/2025
Thrilled to announce my first PhD publication in Nature Comms! We determined structures of the Tad pilus ATPase CpaF from Caulobacter. We use these structures to propose how CpaF employs a rotary mechanism of catalysis to drive Tad pilus assembly. www.nature.com/articles/s41...
nature.com
Conformational changes in the motor ATPase CpaF facilitate a rotary mechanism of Tad pilus assembly - Nature Communications
The bacterial Tad pilus extends and retracts using a single bifunctional ATPase CpaF. Here, the authors employ cryo-EM, fluorescent microscopy, and AlphaFold modelling to propose how a rotary mechanis...
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Eric Topol @erictopol.bsky.social · 02/04/2025
The vaccine against Shingles helps protect against dementia, results of a natural experiment, adding to prior evidence "implications are profound" New @nature.com www.nature.com/articles/d41... nature.com/articles/s41...
nature.com
A natural experiment on the effect of herpes zoster vaccination on dementia - Nature
Using a natural experiment that avoids common bias concerns, this study finds that the live-attenuated shingles vaccine reduced the probability of a new dementia diagnosis within a follow-up period of...
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bioRxivpreprint @biorxivpreprint.bsky.social · 01/03/2025
Deconvolution to restore cryo-EM maps with anisotropic resolution www.biorxiv.org/content/10.1101/202…
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cryoEM papers @cryoempapers.bsky.social · 21/02/2025
Structure-based design of an immunogenic, conformationally stabilized FimH antigen for a urinary tract infection vaccine pubmed.ncbi.nlm.nih.gov/39970181/ #cryoEM
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Veesler lab @veeslerlab.bsky.social · 07/02/2025
With participation of Jimin Lee, Jack Brown, Risako Gen, @dabiophysicist.bsky.social, Cameron Stewart in our lab & in collaboration with the labs of Huan Yan and Tyler Starr www.cell.com/cell/fulltex...
cell.com
Multiple independent acquisitions of ACE2 usage in MERS-related coronaviruses
Two coronaviruses related to MERS-CoV, which infect European Pipistrellus bats, have been found to use ACE2 as their receptor. These viruses target an ACE2 surface region distant from those recognized...
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Goran Bajic @gogo-science.bsky.social · 24/01/2025
Our long-awaited study in collaboration with the Schmidt lab on H5Nx influenza recognition by naive B cells is out! #antibody #bcell #flu #avianflu #cryoEM www.science.org/doi/10.1126/...
science.org
Human naïve B cells recognize prepandemic influenza virus hemagglutinins
Antibodies targeting the influenza hemagglutinin from potentially pandemic H5Nx viruses can be isolated from naïve individuals.
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Veesler lab @veeslerlab.bsky.social · 16/01/2025
Here, we show that SARS-CoV-2 nsp1 inhibits translation in a wide range of mammalian cells from known hosts (deer, mink, cat, dog,...) & unveils the architecture of a Rhinolophus bat ribosome with mRNA channel obstructed by nsp1! Led by Risako Gen @hhmi.bsky.social www.biorxiv.org/content/10.1...
biorxiv.org
SARS-CoV-2 nsp1 mediates broad inhibition of translation in mammals
SARS-CoV-2 nonstructural protein 1 (nsp1) promotes innate immune evasion by inhibiting host translation in human cells. However, the role of nsp1 in other host species remains elusive, especially in b...
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Crawford Kilian @crof.bsky.social · 11/01/2025
www.science.org/doi/10.1126/...
science.org
Repetitive injury induces phenotypes associated with Alzheimer’s disease by reactivating HSV-1 in a human brain tissue model
Head injury may raise the risk of neurodegenerative disease by awakening a dormant virus.
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Matthew McCallum @mattmccallum.bsky.social · 07/01/2025
Indeed - thank you David Goodsell for bringing science to life with art! Seeing the pilus motor featured is still my favourite grad school memory doi.org/10.2210/rcsb...
doi.org
PDB101: Molecule of the Month: Pilus Machine
A molecular machine with a rotary motor builds a long protein filament involved in bacterial motility and attachment.
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Tanmay Bharat @tbharat-lab.bsky.social · 16/12/2024
Structure of the Pseudomonas aeruginosa PAO1 Type IV pilus Finally out in PLOS Pathogens. Congrats Hannah Ochner and co-authors. @mrclmb.bsky.social journals.plos.org/plospathogen...
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Matthew McCallum @mattmccallum.bsky.social · 17/11/2024
Our latest work stabilizing the gB fusion protein. This paves the way for next-gen vaccines against Herpesviruses implicated in cancer, MS, and dementia. 🔗 www.biorxiv.org/content/10.1... #herpesvirus #EBV #HSV #CMV #proteindesign #virology #immunology
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