iiinova — where your digital self keeps evolving

Laurent Guerard @lguerard.bsky.social · 04/07/2025

I couldn't find a napari plug-in to open all file formats using Bioio. So I made one : pypi.org/project/napa... Feel free to use it and suggest improvements 🎉

pypi.org

Client Challenge

Simon F. Nørrelykke @simonfn.bsky.social · 24/03/2025

Reposted by Laurent Guerard

This summer, we are running a one-week intensive workshop on Python-based BioImage Analysis. Are there better ways to spend 6 days in mid-July in Boston?Probably. Would you learn as much as you will here? Probably not. Apply here: iac.hms.harvard.edu/bobiac/2025

iac.hms.harvard.edu

BoBiAC | 2025

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Laurent Guerard @lguerard.bsky.social · 30/01/2025

My gf got a paper published discussing about evolution of a fish and got approached by creationists that didn't get the conclusion 🙃

Laurent Guerard @lguerard.bsky.social · 15/01/2025

Yup, at least for Vscode. It requires an account but otherwise free and learns from your own code base, which is nice.

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Reposted by Laurent Guerard

Nicolas Chiaruttini @nkiaru.bsky.social · 11/01/2025

Finally had a bit of time to play with multi-GPU deconvolution. Using @truenorth-ia.bsky.social and @haesleinhuepf.bsky.social previous work. Here it is in action in #BigDataViewer using async and lazy processing. Look at the two poor laptop GPUs going as fast as they can:

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Depends for what I guess, I'm using Codeium for coding, using the free version and I'm quite happy with it so far.

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📅 Important dates: Course will run from July 6th (Yes, Sunday!) to July 11th 2025. Registration opens at the end of January until 2025-03-16. You will be informed of your participation on 2025-04-07.

As is our signature, programming knowledge is not required 💻, but an eagerness to learn is welcome! What is important is your biological question and a motivating cover letter to get your application noticed!

Hands-on sessions will be dedicated to well-established open source tools ⚙📚 with an emphasis on creating reproducible workflows.

25 candidates will join our amazing group of instructors locally sourced (through SwissBIAS, and across Europe), and tool developers in order to work with modern bioimage analysis tools🏃‍♂️🏃‍♂️🏃‍♂️

After last year's ZIDAS success, we are thrilled to open the doors of the Uni Basel to a fresh new batch of candidates.

Biozentrum, University of Basel @biozentrum.unibas.ch · 13/12/2024

Reposted by Laurent Guerard

Entry-level position (80 - 100%) for bioimage analysis specialist at the Imaging Core Facility (IMCF) of the Biozentrum, University of Basel www.biozentrum.unibas.ch/open-positio... @unibas.ch #Biozentrum #Basel #research #science #joboffer #scientific

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Laurent Guerard @lguerard.bsky.social · 13/12/2024

Come join us if you do image analysis!

Hadas Weiss @hadas.bsky.social · 12/12/2024

Reposted by Laurent Guerard

sorry about that, i asked it to make sense of my life choices

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Laurent Guerard @lguerard.bsky.social · 12/12/2024

If you're scared of IA taking over your job, we probably still have a few years ahead of us 😁

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Laurent Guerard @lguerard.bsky.social · 07/12/2024

Ah yes thanks, sorry, I saw my name too late 😅

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Reposted by Laurent Guerard

Virginia Silio @virsicas.bsky.social · 07/12/2024

Core facility microscopists assemble!

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Laurent Guerard @lguerard.bsky.social · 07/12/2024

I'd be happy to be in as well 🤚🏻

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Reposted by Laurent Guerard

BioVoxxel (Jan Brocher) @biovoxxel.de · 05/12/2024

#BIAToolTip No.15 On Windows there is the ColourSimulator App which allows you to simulate on your screen with a slidable window to inspect design or images to check if those are inclusive for color deficient vision. The #biovoxxel LUT Channels Tool provides a related functionality.

A screenshot showing the use of the Windows ColourSimulatons app to quickly check color blind friendly display and color usage in images. It shows one image of fluorescently stained cells while combining red, green and blue colors and another one using cyan, yellow and magenta together with the apps sliding window that simulates the color blind vision on screen. Additionally it displays the pop-up menu for the tool.

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Laurent Guerard @lguerard.bsky.social · 29/11/2024

Congratulations!! And all the best for your next adventure!