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Reposted by Teun Huijben

Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 23/09/2026

What if any dataset, any size, any number of dimensions, opened in a browser tab from a link? 🔬🧪💻 Luxar is out today: write it in Python, share it as a link, explore it in any browser. Open source. 🧵 @biohub.org Preprint: doi.org/10.5281/zen... Code: github.com/royerlab/luxar

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Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 14/07/2026

📣 Tracking cells through time – including divisions – is a core problem in live-imaging microscopy. We built HOCT, an edge-centric Transformer that hits state-of-the-art on the Cell Tracking Challenge without a pretrained image encoder. Work led by @jookuma.bsky.social arxiv.org/abs/2607.11754 🧪🔬💻

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Teun Huijben @teunhuijben.bsky.social · 29/06/2026

🚨Open call to the Cell Tracking crowd out there🚨! Loïc's team at @biohub.org opened our Kaggle Challenge for 3D cell tracking, with $60k of prize money💰. Spread the news, delve into our gigabytes of imaging (zarr3) and cell tracking (geff) data of developing zebrafish embryos, and start tracking 🤩

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Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 03/06/2026

Want to build some of the most advanced light-sheet microscopes in the world to watch life assemble itself cell by cell? The Royer Lab @ Biohub is hiring an Optical Engineer (Advanced Light Sheet Microscopy). 🧪🔬💻🔧 #Hardware + #Python + Advanced #Optics job-boards.greenhouse.io/biohub/jobs/...

job-boards.greenhouse.io

Optical Engineer, Advanced Light Sheet Microscopy

San Francisco, CA (Hybrid)

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Teun Huijben @teunhuijben.bsky.social · 23/02/2026

What a luxury to travel to #bps2026 by bike this year 🚲, locally in SF! I will be presenting the work from the Royer lab (@biohub.org) on Monday, 1:30 pm, in the Biophysics 101 session 🐠🔬. Followed by a poster ...

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Teun Huijben @teunhuijben.bsky.social · 09/12/2025

Join us for the AI Applications in Biology Symposium at @biohub.org! A full day of talks on ML for structural biology, imaging, single-molecule & multimodal/omics data 🗓️ Feb. 20, 2026 (1 day before BPS) 📍San Francisco 🔗 shorturl.at/uQerL Attend in-person or virtual. Submit abstracts by Jan. 20!

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Teun Huijben @teunhuijben.bsky.social · 01/12/2025

Ultrack on the cover of Nature Methods! Thanks @alexandredizeux.bsky.social for helping us with the beautiful cover art! 😍

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Teun Huijben @teunhuijben.bsky.social · 25/11/2025

Apparently, 🐟 cells are not at all different from herds of 🦓! Great use of #inTRACKtive on very different types of data. Thanks Niko, for trying it out and getting it working already 'during’ my talk 😮

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Crick BioImage Analysis Symposium @cbias.bsky.social · 25/11/2025

Second speaker is @teunhuijben.bsky.social from @loicaroyer.bsky.social group at @czbiohub.bsky.social #CBIAS2025 Tracking is hard because segmentation is hard, especially in whole zebra fish embryos: Ultrack can help github.com/royerlab/ult...

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Anna Foix @afoix.bsky.social · 25/11/2025

Our very own @teunhuijben.bsky.social from the @loicaroyer.bsky.social lab at the Biohub gave a brilliant overview of their journey to improve tracking and visualisation (and our lives in general 😝) at #CBIAS2025 👩🏻‍💻🔬👩🏻‍🔬 #tracking #interdisciplinary #bioimageanalysis

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Teun Huijben @teunhuijben.bsky.social · 24/11/2025

Happy to be in London for #CBIAS2025! Looking forward to two days of image analysis, and presenting #inTRACKtive and #Ultrack tomorrow 🔬😊

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Teun Huijben @teunhuijben.bsky.social · 10/10/2025

Had a great time in Janelia this summer developing #geff with this amazing group of cell tracking enthousiasts and software engineers! #geff is a file format for tracking data allowing universal cross-tool communication for a wealth of tracking tools, amongst others our #ultrack and #inTRACKtive 🚀

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Teun Huijben @teunhuijben.bsky.social · 25/08/2025

🍾What a day 🥳 Two papers of the Royer lab in Nature Methods today, including #inTRACKtive! Check out Loïc's thread below for the details ⬇️ Over the next days, I will share the exciting new features we have added since the original preprint. Stay tuned!

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Jean-Yves Tinevez @jytinevez.bsky.social · 01/08/2025

Saying goodbye to beautiful @hhmijanelia.bsky.social, after an intense two weeks trackhathon. Organized by legends Caroline Malin-Mayor and Morgan Schwartz in the @janfunkey.bsky.social. It has been awesome and productive. Thank you!!

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Teun Huijben @teunhuijben.bsky.social · 21/07/2025

Enjoying two weeks of cell tracking tools, file formats, and collaboration, all at the beautiful Janelia Research Campus. What a place! 🤩🔬🧪 @hhmijanelia.bsky.social

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Aafke Gros @aafkegros.bsky.social · 15/01/2025

Microscopy Nodes is now up on bioRxiv! 🚀 This is a Blender extension that seamlessly integrates and visualizes 3D microscopy data (TIF & @zarr.dev). High-quality volume rendering for anyone, in both EM and fluorescence, regardless of computational expertise! 🔬 www.biorxiv.org/content/10.1...

FIB-SEM dataset visualized with Microscopy Nodes, data from Mocaer et al 2023

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Teun Huijben @teunhuijben.bsky.social · 17/12/2024

Little Nanobiology reunion in San Diego. Great to see multiple professors/alumni at the Cell Bio conference! 🙌 @tudelft.bsky.social #nanobiology #ASCB24 #CellBio2024

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Teun Huijben @teunhuijben.bsky.social · 15/12/2024

Happy to be in sunny☀️San Diego for ASCB Cell Bio! Tomorrow I will present #Ultrack and #inTRACKtive (poster B513) at 11:15 am. Swing by the CZI+@czbiohub.bsky.social booth (#119) for live demos of these tools + #napari & #zebrahub 🐠 Looking forward to connect!🤩🧪🔬 #CellBio2024 #ASCB24 #celltracking

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Teun Huijben @teunhuijben.bsky.social · 11/12/2024

Join us next Friday at UC San Diego for a day full of microscopy 💡🔬, mass spec, and AI! Shout out to @manorlaboratory.bsky.social for putting this together! I will present our recent work on cell tracking algorithms and visualization with #Ultrack and #inTRACKtive🧪 #CellBio2024

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Heilemann Lab @heilemannlab.bsky.social · 03/12/2024

We modified our STED🔬to make it more efficient ('smart') to acquire high-resolution data of small and rare objects in a 3D cell volume. This enabled collecting a large amount of data in a fully automated fashion. With that, we visualized the ulra-structure a small nuclear body, the paraspeckle👇🏻(1/3)

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Teun Huijben @teunhuijben.bsky.social · 26/11/2024

PSFs are just Gaussians, right?? Not when your fluorophore💡is close to a nanoparticle 🟠! Excited to share our recent ACS Nano paper 🥳 in which we present a novel PSF-fitting approach for localization microscopy near nanoparticles. pubs.acs.org/doi/full/10.... Main findings below in🧵[1/10]

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Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 20/11/2024

Indeed! Hello everyone!

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Teun Huijben @teunhuijben.bsky.social · 13/11/2024

🚀Thrilled to announce #inTRACKtive: a web-based tool for exploring massive cell-tracking datasets, no software installation required! Open your browser and dive into terabytes of developmental biology data 🐭🪰🪱🪲🐠 Preprint: biorxiv.org/content/10.1... Repository: github.com/royerlab/inT... 🧵1/n

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Teun Huijben @teunhuijben.bsky.social · 13/11/2024

I will be reposting a few threads from the 🐦 app to populate my profile and share the science we are doing :)

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Teun Huijben @teunhuijben.bsky.social · 12/11/2024

#HiSciSky, time for an introduction! I work with Loïc Royer at the CZ Biohub in San Francisco. My work focuses on image analysis, light-sheet microscopy, and AI. I did my PhD in SMLM, so expect a mix of localization microscopy, cell tracking, light-sheet movies, data viz, and super-resolution!💡🧪🔬

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