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Katrin Hammerschmidt

@khammerschmidt.bsky.social
712 followers 876 following 4 posts

Evolution, Microbiology, Multicellularity, Division of Labour, Major Transitions in Evolution, Life Cycles, Symbiosis Kiel University

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Reposted by Katrin Hammerschmidt
Will Ratcliff @wcratcliff.bsky.social · 28/09/2026
New paper out with @kaylastoy.bsky.social: academic.oup.com/evlett/advan...
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Will Ratcliff @wcratcliff.bsky.social · 15/09/2026
1/17 Submissions are now open for the 2027 Microbial Population Biology GRC! We expect this meeting to be extraordinarily oversubscribed. If you want to come, time is of the essence--apply ASAP! June 27–July 2 • Andover, NH www.grc.org/microbial-po...
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Will Ratcliff @wcratcliff.bsky.social · 15/05/2026
1/35 New preprint! We show that obligate multicellularity removes fundamental population genetic barriers to multicellular adaptation. Even a brief unicellular phase can dramatically constrain the evolution of beneficial multicellular traits. www.biorxiv.org/content/10.6...
biorxiv.org
Obligate multicellularity circumvents population genetic barriers to collective-level adaptation
Complex multicellularity has evolved in just five lineages (animals, plants, brown algae, red algae, and fungi) and in each case, these organisms develop clonally and are obligately multicellular. While prior work has shown that clonal development plays a critical role in the evolution of complex multicellularity, none has disentangled this from the impact of obligate vs facultative multicellular life cycles. Here we use experimental evolution with engineered snowflake yeast ( Saccharomyces cerevisiae ) to directly test how life cycle structure affects multicellular adaptation. We created isogenic strains capable of switching between unicellular and clonal multicellular phases, then evolved populations for 192 days under obligately multicellular, facultatively multicellular, and obligately unicellular regimes. Obligately multicellular populations rapidly evolved larger size, primarily driven by a whole genome duplication, in all five replicates. Facultative populations showed dramatically constrained evolution, with tetraploidy evolving in only 2/10 facultative populations despite experiments demonstrating that it is strongly beneficial across the full life cycle. Mathematical modeling reveals the mechanistic basis for this constraint: facultative life cycles create establishment barriers through two population genetic effects. Group formation dramatically reduces the number of units of selection, making beneficial multicellular mutations vulnerable to drift. This asymmetry in population size between life cycle phases also allows cell-level selection to overpower group-level selection, eliminating mutations that provide group-level benefits but carry cell-level costs. These findings demonstrate that obligate multicellularity circumvents fundamental population genetic barriers to collective-level adaptation, helping explain why complex multicellularity has evolved exclusively in obligately multicellular lineages, and suggesting similar constraints may operate in other evolutionary transitions in individuality. ### Competing Interest Statement The authors have declared no competing interest. U.S. National Science Foundation, https://ror.org/021nxhr62, DEB-1845363 Howard Hughes Medical Institute Gilliam Fellowship National Science Foundation Graduate Research Fellowship
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Will Ratcliff @wcratcliff.bsky.social · 13/05/2026
1/23 New preprint! Been thinking about the origin of cellular life. Specifically, how protocells (or *any* compartments) just aren't enough to support the evolution of increasingly complex cells. You gotta de-Darwinize the parts! The ribosome/genome do this. www.biorxiv.org/content/10.6...
biorxiv.org
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Will Ratcliff @wcratcliff.bsky.social · 07/04/2026
1/25 New paper out in PNAS! We show that the fitness costs of reproductive specialization, where somatic cells give up reproduction, scale inversely with organism size. Larger organisms can afford far more soma, removing a key barrier to multicellular complexity.
pnas.org
The fitness costs of reproductive specialization scale inversely with organismal size
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Vaughn Cooper @vscooper.micropopbio.org · 30/03/2026
Now out in AEM @asm.org! 🎉🧪 *High school student-isolated mutants 👉🏻 novel genetic causes of biofilm-associated adaptations *We learn how diversity arises quickly and is maintained *EvolvingSTEM enables scalable research in classrooms & promotes scientific literacy journals.asm.org/eprint/FBU9M...
journals.asm.org
Genetic diversification of Pseudomonas fluorescens maintained by multi-niche selection within biofilms | Applied and Environmental Microbiology
Bacterial biofilms dominate microbial life; however, their evolutionary genetics remain incompletely understood. Extensive replication of biofilm selection experiments by secondary school students can...
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Enrico Sandro Colizzi @escolizzi.bsky.social · 26/03/2026
How common is multicellularity in bacteria? And archaea? And how does it evolve? We wrote a short review "On the architecture and evolution of prokaryotic multicellularity". Preprint link: bit.ly/4ta06Gq Sharing and comments are much appreciated. 1/4
An overview of bacterial multicellular formations: biofilms, filaments, free-floating aggregates, motile collectives and fruiting bodies. For each form, we mention an analogous eukaryotic multicellular form (respectively animal epitelia, filaments in fungi, Volvox, Dictyostelium/social animals, Dictyostelium and other slime moulds)
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Vaughn Cooper @vscooper.micropopbio.org · 01/03/2026
Given that clonal biofilms of single bacterial species rapidly diversify into niche specialists, how do biofilms of multiple species evolve? A 🧵 featuring new collaborative pubs: 1. www.biorxiv.org/content/10.6... 2. www.nature.com/articles/s41...
biorxiv.org
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Thibaut Brunet @thibautbrunet.bsky.social · 28/02/2026
Final version @nature.com of our paper describing unconventional multicellular development in a choanoflagellate inhabiting an extreme environment. A ton of new data since the first @biorxivpreprint.bsky.social preprint (which we've kept updating). A brief 🧵 (carried over from the old place)
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Bram van Dijk 🏳️‍🌈 @bramvandijk.bsky.social · 25/02/2026
In case you missed it: our review titled "Spatial structure: shaping the ecology and evolution of microbial communities" is out! 🚨 Let me hit you with some highlights on why spatial structure matters. (and why you should care!) Sharing is appreciated 🙏 🧵👇 doi.org/10.1093/fems...
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Kaçar Lab at UW-Madison @kacarlab.bsky.social · 30/01/2026
Our new paper, out today! We resurrected ancient nitrogenases first used by life on Earth 3 billion years ago. We combined synthetic biology and geology & validated their chemical #biosignature in rocks that helps reveal ancient life on Earth!(and beyond!) Link: www.nature.com/articles/s41...
nature.com
Resurrected nitrogenases recapitulate canonical N-isotope biosignatures over two billion years - Nature Communications
The study shows that nitrogenase enzymes have maintained stable isotope signatures over billions of years, revealing how ancient microbes shaped Earth’s nitrogen cycle and offering a new experimental ...
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Christian Kost @kostchristian.bsky.social · 27/01/2026
New paper by Saskia Wilmsen and me just came out BioEssays: A new classification framework to understand evolutionary transitions in individuality Please find the OA paper here: onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
A New Classification Framework to Understand Evolutionary Transitions in Individuality
Classifying biological entities based on whether and how the two fundamental aspects physiological and evolutionary components are represented yields six types of structural organization. The resulti...
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Will Ratcliff @wcratcliff.bsky.social · 13/01/2026
This is a beautiful paper examining the molecular genetics of facultative multicellularity in a marine black yeast. I also love that they figure out the ecological context for the behavior (MC form when in sponges, where there are nutrients, & uni when starving!). www.nature.com/articles/s41...
nature.com
Client Challenge
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Christian Kost @kostchristian.bsky.social · 07/01/2026
Very cool paper by Jyotsna Kalathera et al. from @iamsamayp.bsky.social 's-lab on Bottleneck size drives the evolution of cooperative traits in an aggregative multicellular myxobacterium just out @plosbiology.org Congratulations to all coauthors. journals.plos.org/plosbiology/...
journals.plos.org
Bottleneck size drives the evolution of cooperative traits in an aggregative multicellular myxobacterium
Population bottlenecks shape the evolution of cooperative traits in Myxococcus xanthus through life cycle trade-offs. This study shows that stringent bottlenecks favor growth and sporulation, while re...
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Ricard Solé @ricardsole.bsky.social · 19/12/2025
Cooperation is a universal feature of complex systems, from the origins of life and microbiomes to societies. What universal patterns can be found in these systems? Here's our new @pnas.org paper. @jordipinero.bsky.social @artemyte.bsky.social @sfiscience.bsky.social www.pnas.org/doi/epdf/10....
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Richard Lenski @relenski.bsky.social · 19/12/2025
"The changing roles of Escherichia coli" -- a short essay by yours truly. rdcu.be/eVtXT
rdcu.be
The changing roles of Escherichia coli
Nature Microbiology - Richard Lenski traces the legacy of Escherichia coli and how science is evolving to use this model organism in new ways.
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STCmicrobeblog @stcmicrobeblog.bsky.social · 19/12/2025
in 2013, Elio was so fascinated by the 'heterologous multicellularity' of 𝘊𝘩𝘭𝘰𝘳𝘰𝘤𝘩𝘳𝘰𝘮𝘢𝘵𝘪𝘶𝘮 𝘢𝘨𝘨𝘳𝘦𝘨𝘢𝘵𝘶𝘮 that he chose a cross-section to celebrate STC's 10th anniversary 🙂 👉 smallthingsconsidered.blog/schaechter/2... #MicroSky
𝘊𝘩𝘭𝘰𝘳𝘰𝘤𝘩𝘳𝘰𝘮𝘢𝘵𝘪𝘶𝘮 𝘢𝘨𝘨𝘳𝘦𝘨𝘢𝘵𝘶𝘮
cross-section
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Manlio De Domenico @manlius.bsky.social · 16/12/2025
🚨 What if evolution is the ”law”… and networks are the machines that do the work? In this paper (just published) I try to formalize how living systems are non-equilibrium, information-processing, adaptive matter. With a great biological flavor! 🧪🌐🌍🧬🦠 👉 iopscience.iop.org/article/10.1... 🧵 1/
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Amel Latifi @latifilab.bsky.social · 17/12/2025
How do simple cells make complex patterns? We discovered a key piece in cyanobacteria—an ancient enzyme repurposed to activate a pattern-forming signal. A conserved signaling strategy, showing how nature reuses tools to build multicellularity. www.cell.com/iscience/ful...
cell.com
Co-option of an ancestral peptidase controls developmental patterning in multicellular cyanobacteria
Developmental biology
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Richard Lenski @relenski.bsky.social · 10/12/2025
The 2026 Guarda Summer Course in Evolutionary Biology is now accepting applications. Amazing place, amazing course, amazing opportunity for early grad students. tb.ethz.ch/education/gu...
tb.ethz.ch
Summer school:<br> Evolutionary Biology in Guarda
Information about the annual summer school Evolutionary Biology in Guarda
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Will Ratcliff @wcratcliff.bsky.social · 09/12/2025
1/28 New preprint up, which I think is the best theoretical idea I've ever had. We asked a simple question: what are the costs of investment into non-reproductive somatic cells? Turns out these costs decrease with the *logarithm* of organism size! www.biorxiv.org/content/10.6...
biorxiv.org
The fitness costs of reproductive specialization scale inversely with organismal size
The evolution of reproductive specialization represents a fundamental innovation in multicellular life, yet the conditions favoring its evolution remain poorly understood. Here, we develop a populatio...
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Christian Kost @kostchristian.bsky.social · 27/11/2025
I am very excited to announce that a fully funded PhD position is available in my group. Topic: Synergistic coevolution in mono-specific and multi-species microbial consortia Please RT or forward this information to interested candidates. Deadline: 11.01.26 More info: shorturl.at/f1TuF
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SPP2389 - Emergent Functions of Bacterial Multicellularity @spp2389.bsky.social · 30/10/2025
@kostchristian.bsky.social has an open PhD position as a part of #SPP2389 ! #microsky #mevosky
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Chaitanya Gokhale @gokhalecs.bsky.social · 24/07/2025
Very proud that @gauravathreya.bsky.social's brilliant work based on his Master's thesis is out as his first paper in @asn-amnat.bsky.social. Interested in host-symbiont interdependence, eukaryogenesis, evolutionary transitions in individuality, and some great theory to back it?...check out the🧵👇
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Martin Loose @nartimsoole.bsky.social · 02/07/2025
One of the most exciting discoveries from our lab so far is now online as a preprint! Read a story on how the ParMR and Min systems started to collaborate to create the CorMR cytoskeleton, which now controls cell shape in multicellular cyanobacteria: www.biorxiv.org/content/10.1...
biorxiv.org
Evolutionary repurposing of a DNA segregation machinery into a cytoskeletal system controlling cyanobacterial cell shape
Bacteria, despite their diversity, use conserved cytoskeletal systems for their intracellular organization. In unicellular bacteria, the ParMRC DNA partitioning apparatus is well known for forming act...
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Ricard Solé @ricardsole.bsky.social · 24/06/2025
How does agency change as life evolves from single cells to complex bodies? This review by Stuart Newman and colleagues examines the surprising roles of development, microbes, and even cancer in reshaping what organisms can do. @multicellgenome.bsky.social www.journals.uchicago.edu/doi/pdf/10.1...
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Will Ratcliff @wcratcliff.bsky.social · 24/06/2025
1/27 We have a new paper out! Turns out that snowflake yeast have been hiding a secret from us - they've evolved a (very!) crude circulatory system. Not with blood vessels or a heart, but through spontaneous fluid flows powered by their metabolism. 🧪🔬 www.science.org/doi/full/10....
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SPP2389 - Emergent Functions of Bacterial Multicellularity @spp2389.bsky.social · 24/06/2025
We loved hearing @khammerschmidt.bsky.social talk about evolution at the #MultiBac2025 conference this January - check out the @asm.org report on the origins of early microbial life!
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Katrin Hammerschmidt @khammerschmidt.bsky.social · 24/06/2025
Happy to have been part of EVOLUTION & MECHANISMS GOVERNING MULTICELLULARITY—one of 3 workshops behind @asm.org’s new report. Big questions, great conversations—looking back on origins of microbial life and what lies ahead. Highly recommended read: asm.org/reports/earl... #MicroSky #MEvoSky #EvoSky
asm.org
Early Microbial Life: Our Past, Present, and Future
The Academy report, funded by a grant from the Gordon and Betty Moore Foundation, examines the origins and trajectory of early microbial life to inform and inspire future research.
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Kaçar Lab at UW-Madison @kacarlab.bsky.social · 02/06/2025
New preprint: eukaryotic origins! 🥁 We propose that iron -not oxygen- may have delayed the rise of complex life. Our model reframes the “oxygen delay” puzzle: the gap between atmospheric O2 and early eukaryotic fossils may reflect iron-mediated stress, not for O2: www.biorxiv.org/content/10.1...
iron toxicity model
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EMBO @embo.org · 03/06/2025
Abstract submission extended to 1 July – Submit your work now!
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Matthew Herron @matthewherron.bsky.social · 02/06/2025
Kimberly Chen, a former postdoc in my lab, has published a new article in Genome Biology and Evolution. Selection on mixed populations of Chlamydomonas resulted in the evolution of multicellular structures, all from 2 of 10 founder strains. www.linkedin.com/in/kimberly-... doi.org/10.1093/gbe/...
doi.org
Genetic Predisposition Toward Multicellularity in Chlamydomonas reinhardtii
Abstract. The evolution from unicellular to multicellular organisms facilitates further phenotypic innovations, notably cellular differentiation. Multiple
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Bram van Dijk 🏳️‍🌈 @bramvandijk.bsky.social · 03/06/2025
This is still open for another week or so! Please apply :)
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Iñaki Ruiz-Trillo @multicellgenome.bsky.social · 20/04/2025
#multicellularity lovers: the website for the EMBO workshop in multicellularity is live. Barcelona is waiting for you! #protistsonsky
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Arnau Sebé-Pedrós @arnausebe.bsky.social · 07/05/2025
Check out our latest work on the evolution of animal genome regulation out today in @nature.com. Nicely summarized below by @ianakim.bsky.social. www.nature.com/articles/s41... This is a major output from our ERC-StG project Evocellmap @erc.europa.eu at @crg.eu
nature.com
Chromatin loops are an ancestral hallmark of the animal regulatory genome - Nature
The physical organization of the genome in non-bilaterian animals and their closest&nbsp;unicellular relatives is characterized; comparative analysis shows chromatin looping is a conserved feature of ...
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Vaughn Cooper @vscooper.micropopbio.org · 07/05/2025
Check out this amazing segment on Pittsburgh's WTAE about our EvolvingSTEM program. 🙏🏻 to anchor Shannon Perrine for telling our story and showcasing how we engage students grades 6-12 to learn w/ authentic experiments. Teachers and students see themselves as scientists! #SaveNSF #SupportNIH
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Ignacio J. Melero-Jiménez @ignamelero.bsky.social · 14/04/2025
1/ In our new paper, we explored whether obligate mutualisms can survive abrupt stress via evolutionary rescue. We found that evolutionary rescue is possible—but it comes at the cost of mutualism. @jfriedman.bsky.social #microsky #evosky #mevosky
nature.com
Mutualism breakdown underpins evolutionary rescue in an obligate cross-feeding bacterial consortium - Nature Communications
Rapid genetic adaptation to environmental change, or evolutionary rescue, can be constrained by a less adaptable mutualistic partner. Here, the authors explore evolutionary rescue in an obligate mutua...
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Thibaut Brunet @thibautbrunet.bsky.social · 03/04/2025
Striking new study from @archaeon-alex.bsky.social's lab just out in @science.org on multicellular development induced by compression in Archaea: www.science.org/doi/10.1126/...
science.org
Tissue-like multicellular development triggered by mechanical compression in archaea
The advent of clonal multicellularity is a critical evolutionary milestone, seen often in eukaryotes, rarely in bacteria, and only once in archaea. We show that uniaxial compression induces clonal mul...
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Vaughn Cooper @vscooper.micropopbio.org · 03/04/2025
Our new preprint by @nanamikubota.bsky.social shows that P. aeruginosa, and likely many other bacteria carrying filamentous prophages (like V. parahaemolyticus), risk being exploited by these phages in a runaway process that reduces fitness of both host and virus. www.biorxiv.org/content/10.1... 🧵
biorxiv.org
Filamentous cheater phages drive bacterial and phage populations to lower fitness
Many bacteria carry phage genome(s) in their chromosome (i.e., prophage), and this intertwines the fitness of the bacterium and the phage. Most Pseudomonas aeruginosa strains carry filamentous phages ...
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Will Ratcliff @wcratcliff.bsky.social · 01/04/2025
Super cool new paper by @sshekhr.bsky.social and @wallaceucsf.bsky.social showing that there are collective benefits to simple multicellularity in the *very* charismatic Stentor. www.nature.com/articles/s41... Great write up in the NYT by @jack-tamisiea.bsky.social! www.nytimes.com/2025/03/31/s...
nytimes.com
Eating ‘Family Style’ May Have Set the Stage for Life as We Know It (Gift Article)
Under microscopes, scientists found that giant single-cell organisms were able to vacuum up more food when they are stuck together.
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Will Ratcliff @wcratcliff.bsky.social · 19/03/2025
1/35 New paper out! @jamesTstroud and I dive into why long-term studies are crucial for understanding evolution. They reveal processes impossible to detect in short timescales and capture rare events that transform our understanding of evolutionary dynamics. www.nature.com/articles/s41...
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Peter Lind @peteralind.bsky.social · 13/03/2025
We have a 2-year postdoc position available in the Lind Lab at Umeå University, Sweden! Predicting and steering experimental evolution of antibiotic resistance in Pseudomonas aeruginosa. Reposts appreciated. umu.varbi.com/en/?jobtoken...
umu.varbi.com
Postdoctor, 2 years, in predicting the evolution of antibiotic resistance
The Department of Molecular Biology seeks a postdoctoral researcher who will work with forecasting and steering experimental evolution of antibiotic resistance. The employment is full-time for two yea
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E. Yağmur Erten @yagmurerten.bsky.social · 05/03/2025
A theoretical biology PhD position at the University of Leiden on the coevolution of aging and sociality with awesome @lottedevries.bsky.social please spread the word! www.universiteitleiden.nl/en/vacancies...
universiteitleiden.nl
PhD Candidate in Theoretical Biology
The Institute of Environmental Sciences CML and Faculty of Science is looking for:[PhD Candidate in Theoretical Biology]Vacancy number: 15501 We are looking for an enthusiastic and highly motivated Ph...
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Will Ratcliff @wcratcliff.bsky.social · 05/03/2025
1/46 Hey folks, we have a new paper out on the MuLTEE. Strap in and I’ll tell you the story of how this “little paper on polyploidy” turned into the most data rich paper our lab has produced, largely thanks to the leadership and work ethic of @kaitong25.bsky.social. www.nature.com/articles/s41...
nature.com
Genome duplication in a long-term multicellularity evolution experiment - Nature
In the Multicellularity Long Term Evolution Experiment, diploid yeast evolve to be tetraploid under selection for larger multicellular size, revealing how whole-genome duplication can arise due to its...
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MPI for Evolutionary Biology @mpi-evolbio.bsky.social · 13/02/2025
Workshop-Recap "Concepts in Evolutionary Biology" From Feb 10–13, 2025, researchers gathered in Plön to discuss key concepts, present new findings & engage in lively debates. Big thanks to all participants—looking forward to the next edition! #Evolution #EvoBio #Science交流 #ResearchCommunity
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Leonid Digel @leodigel.bsky.social · 18/02/2025
Published online! Everything you wanted to know about different cable bacteria and their electrical conductivity. @cemau.bsky.social doi.org/10.1038/s443...
doi.org
Comparison of cable bacteria genera reveals details of their conduction machinery | EMBO reports
imageimageThis study uncovers key morphological and ultrastructural similarities between cable bacteria genera. The periplasmic conductive fibers display variable electrical conductivity, but conserve...
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Jamie Hall @jpjhall.bsky.social · 18/02/2025
I'm delighted to announce that the 2025 @microbiologysociety.org meeting on "Understanding and predicting microbial evolutionary dynamics" will be held in Liverpool 26-27 November 2025! Abstract submission will open soon... #microsky 🧪🧫🦠 microbiologysociety.org/event/societ...
microbiologysociety.org
Understanding and predicting microbial evolutionary dynamics - 2025 meeting
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Will Ratcliff @wcratcliff.bsky.social · 06/02/2025
It's interesting, I recorded two interviews this week, and both asked me to comment on group selection vs inclusive fitness. I was diplomatic, but honestly, I think the anti-group selection dogma stemming from the 60s is pretty embarrassing, highlighting a surprising lack of critical thinking.
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Michael Brockhurst @brockhurstlab.bsky.social · 06/02/2025
☎️ Calling #MEvoSky ☎️ 2x 5-year research associate / research assistant positions in experimental evolution ERC-funded project: How do mobile genetic elements and defence systems shape bacterial genome evolution? Join the friendly and exciting @mermanchester.bsky.social community in Manchester!
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Vaughn Cooper @vscooper.micropopbio.org · 31/01/2025
Since 1991, the NIH Science Education Partnership Award (SEPA) is dedicated to K-12 students & funds innovative STEM educational projects. It supports our EvolvingSTEM program that engages >1500 students/yr in authentic research. 🚨Its Program Announcement (PAR-23-137) is now GONE.😡 nihsepa.org
nihsepa.org
Home
The Science Education Partnership Award (SEPA) program funds innovative science, technology, engineering, and mathematics (STEM) and Informal Science Education (ISE) educational projects for pre-kinde
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