Sign in

Jarel Elgin Tolentino

@jarelelgin.bsky.social
45 followers 50 following 5 posts

Postdoc at the University of Tokyo

PostsRepliesMedia
Reposted by Jarel Elgin Tolentino
Antigen Evolution & Design Lab @antigenevo.bsky.social · 07/07/2026
Inaugural post! We are a brand new lab @pasteur.fr studying how pathogen antigens evolve and how we can exploit these proteins' evolution to make better vaccines! Read a few words from the currently sole member of the lab @spyroslytras.bsky.social below! 😁 www.pasteur.fr/en/research-...
pasteur.fr
Predicting viral evolution with AI
Spyros Lytras is one of four young scientists selected in 2025 to lead new research groups at the Institut Pasteur. He has headed the “Antigen Evolution & Design laboratory” 5-year Group (G5) since Ju...
15117
Reposted by Jarel Elgin Tolentino
Steph N. Seifert, PhD @stephseifertphd.bsky.social · 15/06/2026
🚨 Ever wonder why some viral reassortants establish and spread while others disappear? Us too! Led by @ricardoriveroh.bsky.social, we studied drivers of viral reassortment across hantaviruses and found that it varies dramatically among lineages (1/3) Preprint: doi.org/10.64898/202...
13215
Reposted by Jarel Elgin Tolentino
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 06/06/2026
Folddisco is now published @natbiotech.nature.com. It’s a fast motif search for similar 3D DISCOntinuous residues like catalytic sites or zinc fingers across the entire protein universe. 📄 www.nature.com/articles/s41... 💾 folddisco.foldseek.com​​​​​​​​​​​​​​​​ 🌐 search.foldseek.com/folddisco
nature.com
Structural motif search across the protein universe with Folddisco - Nature Biotechnology
Folddisco enables protein structural motif search in million scale databases.
213455
Reposted by Jarel Elgin Tolentino
Spyros Lytras @spyroslytras.bsky.social · 07/06/2026
A very busy but exciting first week at @pasteur.fr !! Got a nice empty office that will hopefully start filling up soon! 😁😁
1352
Reposted by Jarel Elgin Tolentino
Jon Cohen @cohenjon.bsky.social · 20/05/2026
www.science.org/content/arti...
science.org
Vaccine experts debate options to combat outbreak of unusual Ebola strain
Small monkey experiments raise some hopes—and many questions
0147
Reposted by Jarel Elgin Tolentino
CVR Bioinformatics @cvrbioinfo.bsky.social · 19/05/2026
. @ulad-litvin.bsky.social is presenting his work at #ViBioM2026 @cvrinfo.bsky.social
1125
Reposted by Jarel Elgin Tolentino
Science Magazine @science.org · 12/05/2026
Exclusive: Alleging a “pattern of deception” in virus studies done over a decade ago, the U.S. has proposed a ban on federal funding to a prominent coronavirus researcher whose more recent work has incited unproven accusations that he helped start the #COVID19 pandemic. scim.ag/3R7nQx1
scim.ag
Virologist accused of starting COVID-19 will fight U.S. ban on funding
HHS memo says Ralph Baric had a “pattern of deception” in describing virus studies long before pandemic
34611
Reposted by Jarel Elgin Tolentino
Ed Hutchinson @socialinfluenza.bsky.social · 07/05/2026
🚨New paper!🚨 Our study showing that H5N1 influenza viruses can remain infectious in unpasteurised milk for, basically, as long as you are likely to encounter that milk has now been published: www.microbiologyresearch.org/content/jour...
A drawing of a Fresian cow whose markings resemble influenza viruses (image: Ed Hutchinson, 2025)
28642
Reposted by Jarel Elgin Tolentino
Andrew Roger @andrewjroger.bsky.social · 06/05/2026
IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models academic.oup.com/mbe/article/...
academic.oup.com
IQ-TREE 3: Phylogenomic Inference Software using Complex Evolutionary Models
Abstract. IQ-TREE (https://iqtree.github.io/) is a widely used open-source software tool for efficiently inferring phylogenetic trees under maximum likelih
2210105
Reposted by Jarel Elgin Tolentino
Spyros Lytras @spyroslytras.bsky.social · 07/05/2026
Press release with study details and comments below! www.ims.u-tokyo.ac.jp/imsut/en/abo...
062
Reposted by Jarel Elgin Tolentino
Spyros Lytras @spyroslytras.bsky.social · 07/05/2026
Been a while since a new SARS-CoV-2 relative came up... here's a new one! 🦇🦇 Together with Dr. Wacharapluesadee's team at Chulalongkorn we comprehensively describe a new sarbecovirus clade from Thailand! Now out in @cp-cell.bsky.social @systemsvirology.bsky.social www.cell.com/cell/fulltex...
cell.com
Virological characteristics of SARS-CoV-2-related coronaviruses dynamically circulating in Southeast Asia
A study by the G2P-Asia consortium provides a comprehensive analysis spanning fieldwork, as well as experimental and computational investigations into the biology, evolution, and ecology of novel SARS...
1207
Reposted by Jarel Elgin Tolentino
Jolly Lab @jollylab.bsky.social · 06/05/2026
We are incredibly excited to see our most recent story out @nature.com today:HIV triggers CD4-signaling to remodel nuclear pores and license infection!A heroic effort led by our very own @d-mesner.bsky.social & @mattvxwhelan.bsky.social! @blizardinstitute.bsky.social Link: tinyurl.com/HIVNup 1/11
42011
Reposted by Jarel Elgin Tolentino
The Sato Lab (Kei Sato) @systemsvirology.bsky.social · 06/05/2026
BREAKING🔔 The 57th paper from G2P-Japan🇯🇵 is out at Cell @cellcellpress.bsky.social 🦇!! We elucidated the virological characteristics of a new bat coronavirus identified in Thailand🇹🇭 The debut work by G2P-Asia🌏! Please repost🔥 www.cell.com/cell/fulltex...
cell.com
Virological characteristics of SARS-CoV-2-related coronaviruses dynamically circulating in Southeast Asia
A study by the G2P-Asia consortium provides a comprehensive analysis spanning fieldwork, as well as experimental and computational investigations into the biology, evolution, and ecology of novel SARS...
02112
Reposted by Jarel Elgin Tolentino
Ed Hutchinson @socialinfluenza.bsky.social · 17/04/2026
🚨New pre-print!🚨 Using a panel of different H5N1 clade 2.3.4.4b viruses and human seasonal influenza, and mammary explants from common beef and dairy cattle breeds, we add to the growing data showing that H5N1 spillovers into cattle should be seen as an ongoing risk www.biorxiv.org/content/10.6...
A panel of immunohistochemistry images showing infection of a panel of IAV viruses (as 6:2 reassortants on a PR8 backbone) in epithelia from the teat and gland cisterns of Aberdeen Angus, Limousin and Holstein Friesian cattle
33415
Reposted by Jarel Elgin Tolentino
Tom Peacock @peacockflu.bsky.social · 14/04/2026
Excited to advertise a fully funded PhD with @socialinfluenza.bsky.social investigating how influenza virus evolution differs between different avian hosts (and how this impacts pandemic potential). Joint between @pirbrightinst.bsky.social + @cvrinfo.bsky.social www.findaphd.com/phds/project...
findaphd.com
FULLY FUNDED PhD - Visualising avian influenza virus tropism and co-infection in avian hosts at University of Glasgow on FindAPhD.com
PhD Project - FULLY FUNDED PhD - Visualising avian influenza virus tropism and co-infection in avian hosts at University of Glasgow, listed on FindAPhD.com
14037
Reposted by Jarel Elgin Tolentino
The Sato Lab (Kei Sato) @systemsvirology.bsky.social · 31/03/2026
Thanks for kindly introducing our recent study😁 I hope you like it🦇
2285
Reposted by Jarel Elgin Tolentino
Kristian G. Andersen @kgandersen.bsky.social · 29/03/2026
Lab Leakers: "SARS-CoV-2 can't infect bats, so it must have been made in a lab". Science: "Let's do the experiment". SARS-CoV-2 behaves exactly like one would expect in a reservoir species - low-level infection, no overt disease, etc. Elegant study from Sato Lab: www.biorxiv.org/content/10.6...
4378116
Reposted by Jarel Elgin Tolentino
Nature @nature.com · 17/03/2026
Nature research paper: Structures of Marburgvirus glycoprotein and its complex with NPC1 receptor go.nature.com/4urU3yb
go.nature.com
Structures of Marburgvirus glycoprotein and its complex with NPC1 receptor - Nature
Marburgvirus glycoprotein binds to the endosomal receptor NPC1 in a distinct orientation with higher affinity compared with Ebola virus glycoprotein, accompanied by fusion-relevant rearrangements, enabling more efficient viral entry.
0193
Reposted by Jarel Elgin Tolentino
Nature @nature.com · 12/03/2026
Nature research paper: Immune evasive DNA donors and recombinases license kilobase-scale writing go.nature.com/4b3e0E2
go.nature.com
Immune evasive DNA donors and recombinases license kilobase-scale writing - Nature
INSTALL overcomes fundamental challenges for DNA delivery and integration methods by synergizing immune-stealth nucleic acids with recombinases to enable kilobase-scale integration strategies without viral vectors.
1184
Reposted by Jarel Elgin Tolentino
Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 28/02/2026
The first version of FigTree was released nearly 20 years ago and it is still widely used (including by me). But there are currently 85 issues on the GitHub repo (github.com/rambaut/figt...) and some of them I don’t really like the look of.
github.com
rambaut/figtree
Automatically exported from code.google.com/p/figtree - rambaut/figtree
314742
Reposted by Jarel Elgin Tolentino
Joe Grove @grovearmada.bsky.social · 18/02/2026
It is almost five years since I first applied AlphaFold to a handful of viral proteins. Today, hundreds of thousands of predictions and many discoveries later, we are delighted to announce the integration of our Viro3D dataset into the @ebi.embl.org and Google DeepMind AlphaFold Database.
23711
Reposted by Jarel Elgin Tolentino
Laboratory of Functional Viromics (LETKO) @fviromics.bsky.social · 12/02/2026
A big thank you to Dr. Nick Catanzaro for visiting the LoFV this week and sharing his cool science!
041
Reposted by Jarel Elgin Tolentino
Spyros Lytras @spyroslytras.bsky.social · 14/02/2026
Our paper on inferring context dependent entropy using protein language models is officially out in NAR Genomics & Bioinformatics! 🧬🤖 with Adam Strange, Jumpei Ito, and @systemsvirology.bsky.social academic.oup.com/nargab/artic... details below... #NARGAB
academic.oup.com
Inferring context-specific site variation with evotuned protein language models
Abstract. Multiple sequence alignments (MSAs) have been traditionally used for making inferences about site-specific diversity in proteins. Recent advancem
1229
Reposted by Jarel Elgin Tolentino
Nature @nature.com · 12/02/2026
Nature research paper: Transmission of MPXV from fire-footed rope squirrels to sooty mangabeys go.nature.com/4a9xMxa
go.nature.com
Transmission of MPXV from fire-footed rope squirrels to sooty mangabeys - Nature
An outbreak of MPXV in sooty mangabeys in Côte d’Ivoire was linked to MPXV-infected fire-footed rope squirrels, providing direct evidence of interspecies transmission and indicating risk for zoonotic transmission of MPXV from both hosts.
0133
Reposted by Jarel Elgin Tolentino
Ed Hutchinson @socialinfluenza.bsky.social · 30/01/2026
🚨New Pre-Print🚨 Although H3N2 subclade K has multiple mutations in HA, neutralisation assays with pre-epidemic human sera show only moderate antigenic drift, and vaccines used in the 2024/2025 flu season induced cross-neutralising immunity www.medrxiv.org/content/10.6...
A data figure showing a phylogenetic tree of H3N2 with 2025-K highlighted, the structure of the HA trimer with mutations characteristic of K highlighted, and box and whisker plots showing % neutralisation of the 2022 H3N2 vaccine strain, and of 2025 clade K, by various human antisera
22916
Reposted by Jarel Elgin Tolentino
The Menachery Lab @themenacherylab.bsky.social · 14/01/2026
Our paper on the role of #SARSCoV2 NSP3 in stress granule control is now out in JVI. Reposting our original BioRXIV thread on the summary. journals.asm.org/doi/10.1128/...
journals.asm.org
Key residues in SARS-CoV-2 NSP3 hypervariable region are necessary to modulate early stress granule activity | Journal of Virology
Stress granules play a key role in host-antiviral defenses, and viruses have developed strategies to antagonize their activity. For SARS-CoV-2, the virus has two proteins that antagonize stress granul...
093
Reposted by Jarel Elgin Tolentino
Thelonevirologist @thelonevirologist.bsky.social · 12/01/2026
Serine protease-driven entry and S2′ cleavage flexibility of feline coronavirus during feline enterocyte infections journals.plos.org/plospathogen...
journals.plos.org
Serine protease-driven entry and S2′ cleavage flexibility of feline coronavirus during feline enterocyte infections
Author summary Like many viruses, the common feline coronavirus (FCoV) relies on the host replication machinery to infect intestinal cells. Our study revealed how it works: FCoV exploits intestinal en...
032
Reposted by Jarel Elgin Tolentino
Dr. Rowan Durrant @rowandurrant.bsky.social · 13/01/2026
New preprint! We had a look at the codon and dinucleotide usage of rabies clades that circulate in specific host species, and found some interesting differences, particularly between carnivore- and bat-associated clades 👀 Coauthors on bluesky: @jdushoff.bsky.social @matt-arnold-bio.bsky.social
biorxiv.org
Differences in codon usage between host-species-specific rabies virus clades are driven by UpA and purine content
Viral genes sometimes use certain codons more than others due to their nucleotide content, translational efficiency, and selection pressure from the host immune system. The rabies virus (RABV) is a ne...
153
Reposted by Jarel Elgin Tolentino
Spyros Lytras @spyroslytras.bsky.social · 20/12/2025
New preprint led by our MSc student Wenye Li!! 🎉 @systemsvirology.bsky.social What we find is a historic genetic interplay between sarbecoviruses and their horseshoe bat hosts' ACE2 receptor! 🦇 🧵... www.biorxiv.org/content/10.1...
biorxiv.org
Genetic diversity in horseshoe bat ACE2 and sarbecovirus spike proteins mutually shape one another
Angiotensin-converting enzyme 2 (ACE2) serves as the entry receptor for a wide diversity of sarbecoviruses naturally harboured by horseshoe bats (genus Rhinolophus ). Despite the extensive circulation...
1227
Reposted by Jarel Elgin Tolentino
BatResearch - A.Prof. Aaron Irving @batresearch.bsky.social · 10/12/2025
Molecular insights into species-specific ACE2 recognition of coronavirus HKU5 | Nature Communications www.nature.com/articles/s41...
nature.com
Molecular insights into species-specific ACE2 recognition of coronavirus HKU5 - Nature Communications
This study reveals how the bat coronavirus HKU5 recognizes ACE2 receptors across mammals and birds, uncovering a cross-class receptor usage in coronaviruses and highlighting its potential for interspe...
042
Reposted by Jarel Elgin Tolentino
BK. Titanji @boghuma.bsky.social · 08/12/2025
A recombinant strain of mpox virus has been isolated from a patient in the UK containing fragments of clade I and clade II virus. Recombination occurs when two strains of virus infect a cell. These events tend to be rare but are well described in poxviruses. www.theguardian.com/world/2025/d...
theguardian.com
England health officials identify newly evolved variant of mpox
Virus caught by person who travelled to Asia combines more severe form of mpox with less virulent type
36821
Reposted by Jarel Elgin Tolentino
Denis - The COVID Info Guy @thecovidinfoguy.bsky.social · 04/12/2025
France: "Two cases of Middle East Respiratory Syndrome coronavirus (MERS-CoV) have been confirmed in France in individuals who recently returned from travel abroad" MERS-CoV mainly spreads from camels in the Arabian Peninsula. Human transmission occurs in healthcare but community spread is rare.
bnonews.com
France confirms 2 MERS coronavirus cases in returning travelers
Two cases of Middle East Respiratory Syndrome coronavirus (MERS-CoV) have been confirmed in France in individuals who recently returned from travel abroad, according to the French Ministry of Health. ...
58843
Reposted by Jarel Elgin Tolentino
Nature @nature.com · 05/12/2025
Nature research paper: Dated gene duplications elucidate the evolutionary assembly of eukaryotes go.nature.com/4azJDF8
go.nature.com
Dated gene duplications elucidate the evolutionary assembly of eukaryotes - Nature
Analysis of eukaryotic gene sequences using a relaxed molecular clock methodology indicate that eukaryotes emerged 3.0–2.25 billion years ago as a result of mitochondrial endosymbiosis with complex archaea that already possessed an elaborated cytoskeleton, membrane trafficking, endomembrane, phagocytotic machinery and a nucleus.
02614
Reposted by Jarel Elgin Tolentino
Spyros Lytras @spyroslytras.bsky.social · 03/12/2025
Big congrats to Matt Turnbull @samjwilsonphd.bsky.social and all co-authors!! 🎉🎉 New paper in @science.org showing how the interaction between flu PB1 and host ANP32A control how flu can replicate in higher body temperatures! 🦆🦆🦆 www.science.org/doi/10.1126/...
science.org
Avian-origin influenza A viruses tolerate elevated pyrexic temperatures in mammals
Host body temperature can define a virus’s replicative profile—influenza A viruses (IAVs) adapted to 40° to 42°C in birds are less temperature sensitive in vitro compared with human isolates adapted t...
0297
Reposted by Jarel Elgin Tolentino
Nature @nature.com · 01/12/2025
Nature research paper: Ancient DNA from Shimao city records kinship practices in Neolithic China go.nature.com/3Ms3A6M
go.nature.com
Ancient DNA from Shimao city records kinship practices in Neolithic China - Nature
Sequencing of 144 ancient genomes from Shimao city and its satellites presents pedigrees among tomb owners spanning up to four generations showing predominantly patrilineal descent structure across Shimao communities, and possibly sex-specific sacrificial rituals.
083
Reposted by Jarel Elgin Tolentino
Ed Hutchinson @socialinfluenza.bsky.social · 28/11/2025
🚨New Paper!🚨 Some like it hot: Matt Turnbull and @samjwilsonphd.bsky.social collaborated with groups from @cvrinfo.bsky.social, @cam.ac.uk and beyond to show that, while our fevers are hot enough to control human flu, they don't protect against avian influenzas adaptd to the hotter bodies of birds
science.org
Avian-origin influenza A viruses tolerate elevated pyrexic temperatures in mammals
Host body temperature can define a virus’s replicative profile—influenza A viruses (IAVs) adapted to 40° to 42°C in birds are less temperature sensitive in vitro compared with human isolates adapted t...
1177
Reposted by Jarel Elgin Tolentino
Chris Thorogood @christhorogood.bsky.social · 19/11/2025
Rafflesia hasseltii: a plant seen more by tigers than people. Watching this flower open by night was the closest thing to magic:
623366
Reposted by Jarel Elgin Tolentino
Science Magazine @science.org · 25/11/2025
Some archaea—an ancient group of microorganisms—have an entirely novel genetic code, according to a new study in Science. The findings expand our understanding of how alternative genetic codes evolve and hint at new molecular tools for biotechnology applications. scim.ag/4omApQ7
scim.ag
An archaeal genetic code with all TAG codons as pyrrolysine
Multiple genetic codes developed during the evolution of eukaryotes and bacteria, yet no alternative genetic code is known for archaea. We used proteomics to confirm our prediction that certain archae...
29032
Reposted by Jarel Elgin Tolentino
The Menachery Lab @themenacherylab.bsky.social · 25/11/2025
A new preprint from our group on control of stress granules (SGs) by #SARSCoV2. Working with Jakob Nilsson's group, we identified key residues in SARS2 NSP3 critical for binding FMRP proteins & disrupting SGs formation. www.biorxiv.org/content/10.1...
biorxiv.org
Key residues in SARS-CoV-2 NSP3 hyper variable region are necessary to modulate early stress granule activity.
Antagonism of the host responses that limits viral replication is critical to the success of infection. Recently, we identified that the hypervariable region (HVR) of SARS-CoV-2 NSP3 binds to FXR1 and...
1113
Reposted by Jarel Elgin Tolentino
Daniel Hurdiss @danielhurdiss.bsky.social · 24/11/2025
Structural insights into MERS and SARS coronavirus membrane proteins www.nature.com/articles/s42...
nature.com
Structural insights into MERS and SARS coronavirus membrane proteins - Communications Biology
Structural insights into SARS and MERS coronavirus membrane protein reveals differences and conserved sites of an inhibitor binding pocket, aiding in the design of broad-spectrum and specific antivira...
0177
Reposted by Jarel Elgin Tolentino
BK. Titanji @boghuma.bsky.social · 22/11/2025
Very sad. Apparently the patient was someone with comorbidities that placed them at higher risk of a bad outcome. At a time when the threat of new pandemic is higher that ever we need our public health and surveillance systems strengthened not dismantled. www.linkedin.com/redir/redire...
linkedin.com
1st human known to be infected with H5N5 strain of bird flu dies, Washington state officials say
The first human to have ever been infected with H5N5 strain of bird flu has died, Washington state health officials confirmed late Friday.
210829
Reposted by Jarel Elgin Tolentino
Nature Microbiology @natmicrobiol.nature.com · 20/11/2025
#NatMicroPicks Cracking the code of Yellow Fever Virus entry! 🔑🧪 YFV uses multiple LDL receptor family members, including LRP4, LRP1, and VLDLR, as entry receptors, offering new targets for antiviral strategies #MicroSky #VirusSky www.nature.com/articles/s41...
nature.com
Multiple LDLR family members act as entry receptors for yellow fever virus - Nature
The low-density lipoprotein receptor family members LRP1, LRP4 and VLDLR are entry receptors for yellow fever virus.
0123
Reposted by Jarel Elgin Tolentino
Paul Lehmann @plehmann.bsky.social · 17/09/2024
Important advice for every PhD student: The importance of stupidity in scientific research I can still remember how stupid I often felt during my PhD. And I can observe my PhD students struggling with the same feeling. I find it helpful to understand that stupidity usually comes before discovery.
612742
Reposted by Jarel Elgin Tolentino
Mun-Keat Looi @munkeatlooi.bsky.social · 19/11/2025
Marburg virus outbreak: Six deaths confirmed in Ethiopia www.bmj.com/content/391/...
bmj.com
Marburg virus outbreak: Six deaths confirmed in Ethiopia
055
Reposted by Jarel Elgin Tolentino
Sergey Ovchinnikov @sokrypton.org · 19/11/2025
A few py2Dmol updates 🧬 py2dmol.solab.org Integration with AlphaFoldDB (will auto fetch results). Drag and drop results from AF3-server or ColabFold for interactive experience! (1/4)
110331
Reposted by Jarel Elgin Tolentino
Nature @nature.com · 19/11/2025
Nature research paper: Ecology and spread of the North American H5N1 epizootic go.nature.com/4nTxEp5
go.nature.com
Ecology and spread of the North American H5N1 epizootic - Nature
The panzootic of highly pathogenic H5N1 since 2021 was driven by around nine introductions into the Atlantic and Pacific flyways, followed by rapid dissemination through wild migratory birds, primarily Anseriformes.
0123
Reposted by Jarel Elgin Tolentino
Science Magazine @science.org · 18/11/2025
"Looking back, that season taught me lessons I’ll hold forever. I learned to ask for help without shame and lean on my support system of friends and classmates. Most importantly, I learned to keep sight of why I came here in the first place." #ScienceWorkingLife scim.ag/49lcqwR
An illustration of a man carrying a laptop climbing up stairs with people underneath them, with text: As an international scholar, my academic dreams belong to my family, too
0526