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Katharina Imkeller

@imkeller.bsky.social
190 followers 272 following 11 posts

Biophysicist interested in immunology. Professor at Goethe University Frankfurt | Frankfurt Cancer Institute. agimkeller.github.io

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Katharina Imkeller @imkeller.bsky.social · 02/09/2026
New publication: Benchmarking cell-type deconvolution in cross-platform transcriptomic data We identified methods for deconvolution of mixed transcriptomic profiles that are particularly robust across various experimental setups and transcriptomic platforms. doi.org/10.1186/s130...
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Katharina Imkeller @imkeller.bsky.social · 08/07/2026
New preprint on spatial AIRR here 👇 Great accomplishment by @schuckjonas.bsky.social and many others. This is the bioinformatic basis for ongoing biological discovery projects in tumor immunology. @loewe-fci.bsky.social @trr417.bsky.social
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Katharina Imkeller @imkeller.bsky.social · 08/07/2026
Thank you for inviting me to this wonderful retreat! I enjoyed the scientific exchange!
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Frankfurt Cancer Institute @loewe-fci.bsky.social · 25/06/2026
🚨 Deadline extension: Register until July 10 for the #FrankfurtCancerConference 2026! ✨ Highlights: 9 scientific sessions, 32 excellent speakers, short talks, posters, lots of time to connect! 👇 Check out our program and register here: www.frankfurtcancerconference.org
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Frankfurt Cancer Institute @loewe-fci.bsky.social · 08/06/2026
✨ Introducing the speakers of our #DrugDesign sessions at the #FrankfurtCancerConference 2026 – Part 1: ▫️Gerald Crabtree ▫️Sine Reker Hadrup ▫️Michael Hölzel 📆 Sep 2–4, Frankfurt 🔗 www.frankfurtcancerconference.org 👉 Deadline: June 25, 2026
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Julius Enssle @jenssle.bsky.social · 04/06/2026
🎉🚀 We're excited to share our latest insights on #DLBCL www.cell.com/cancer-cell/...! 🧵 How can we understand its clinical & molecular heterogeneity by incorporating the proteome?
cell.com
Pathogenesis of diffuse large B cell lymphoma proteogenotypes
Enssle et al. perform transcriptomic and proteomic profiling of diffuse large B cell lymphoma (DLBCL), revealing seven proteogenotypes (PGs) that reflect molecular and tumor microenvironment features ...
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Kurianlab @kurianlab.bsky.social · 28/05/2026
Seminar Alert: *Prof. Elena Conti* 'RNA exosome complex: Molecular Mechanisms of RNA degradation in health and disease' When: 18.06.2026, 14:00 Where: Haus 22-1 (lecture hall H22-1), Neiderad Campus (Uni KliniK), Goethe University RT🙏 @scale-cluster-ffm.bsky.social @goetheuni.bsky.social
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Waggoner Lab @labwaggoner.bsky.social · 28/05/2026
Pan-cancer spatial atlas of tertiary lymphoid structures www.science.org/doi/10.1126/... @science.org @utmdanderson.bsky.social
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Johannes Rainer @jorainer.bsky.social · 25/05/2026
Vince Carey kicking off the 22nd edition of the #CSAMA @bioconductor.bsky.social summer school in Brixen 🇮🇹 #CSAMA2026
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Frankfurt Cancer Institute @loewe-fci.bsky.social · 20/05/2026
✨ Keynote spotlight of #FrankfurtCancerConference 2026: Douglas Hanahan, Distinguished Scholar @ludwigcancer.bsky.social, Lausanne. Renowned for the #HallmarksOfCancer & pioneering work on #tumorigenesis and #TumorMicroenvironment 👉 Register until June 25, 2026! www.frankfurtcancerconference.org
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SFB/TRR 417 @trr417.bsky.social · 13/05/2026
💬 Join us for a CRC Crosstalk Seminar 💬 “Decoding and targeting cellular dynamics in colorectal cancer metastasis” with Dr. Rene Jackstadt (@jackstadt-lab.bsky.social), from HI-STEM gGmbH and @dkfz.bsky.social 📅 Wed, May 20, 2026 🕙 12:00 pm 📍 Lecture Hall, Georg-Speyer-Haus FFM / Hybrid
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Frankfurt Cancer Institute @loewe-fci.bsky.social · 13/05/2026
✨ Keynote spotlight of the #FrankfurtCancerConference 2026: Prof. Carl June, pioneer in CAR T cell therapy and #immunotherapy @upenn.edu. His groundbreaking work led to CTL019, the first FDA-approved CAR T cell therapy in the US. 👉 Register until June 25, 2026! 🔗 www.frankfurtcancerconference.org
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Wolfgang Huber @wkhuber.bsky.social · 09/04/2026
For PhD students or postdocs who start out wanting to analyse their own high-throughput data:
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Immunity @cp-immunity.bsky.social · 16/03/2026
Online now: Ultra-high-throughput IGH genotyping of 25 global populations reveals population-biased allelic diversity and homozygous V and D gene deletions
dlvr.it
Ultra-high-throughput IGH genotyping of 25 global populations reveals population-biased allelic diversity and homozygous V and D gene deletions
The genes that encode our antibodies display extensive variation between individuals. Corcoran et al. developed a high-throughput sequence-based method for identifying variations in antibody genes (ImmuneDiscover). This enabled the sequencing of 2,486 individuals with 25 different population ancestries, identifying variations that are population specific and may underlie differences in disease susceptibility and vaccine response at both an individual and population level.
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Frankfurt Cancer Institute @loewe-fci.bsky.social · 09/03/2026
📢 Call for Abstracts - Frankfurt Cancer Conference 2026 Present your research September 2-4 as a poster or get selected for a short talk. Share your work, get feedback, and connect at the international #FrankfurtCancerConference. 📆 Deadline: March 26, 2026 🔗 www.frankfurtcancerconference.org
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Claus Wilke @clauswilke.com · 13/02/2026
AI agent goes nuts on open source maintainer after having its pull request denied. This is a pretty insane story. Open source development as we've been used to for the last few decades is likely over. 1/ theshamblog.com/an-ai-agent-...
theshamblog.com
An AI Agent Published a Hit Piece on Me
Summary: An AI agent of unknown ownership autonomously wrote and published a personalized hit piece about me after I rejected its code, attempting to damage my reputation and shame me into acceptin…
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Frankfurt Cancer Institute @loewe-fci.bsky.social · 19/01/2026
Save the Date: FRANKFURT CANCER CONFERENCE 2026 Translating Paul Ehrlich’s Magic Bullet into Novel Targeted Therapies 🕗 Wed., September 2, 2026 – Fri., September 4, 2026 📍Campus Westend, @goetheuni.bsky.social, Frankfurt/Main, DE ➡️ www.frankfurtcancerconference.org #frankfurtcancerconference
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Roberto Covino @rocovino.bsky.social · 05/12/2025
The Frankfurt Institute for Advanced Studies (FIAS) and the newly funded Cluster of Excellence SCALE are seeking several Independent Research Group Leaders to drive theoretical and computational research in molecular and cellular life science. fias.institute/de/das-fias/...
fias.institute
Independent Research Group Leaders (f/m/d) SCALE / FIAS
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Frankfurt Cancer Institute @loewe-fci.bsky.social · 11/11/2025
Great news: The #LOEWE Center Frankfurt Cancer Institute @goetheuni.bsky.social will continue to receive funding from the state of Hesse! 🎉 12 mio € for two more years – a strong signal for the importance of #translational #cancer #research in Frankfurt. Thank you Hesse and everyone involved!!
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Goethe-Universität Frankfurt @goetheuni.bsky.social · 10/11/2025
Im @loewe-fci.bsky.social arbeiten Forschende gemeinsam an translationaler #Krebsforschung. Nun wird das #FCI weiter vom Land Hessen gefördert: Wissenschaftsminister Timon Gremmels hat heute einen Förderbescheid für die Jahre 2026/27 überreicht. 🔗 Mehr: aktuelles.uni-frankfurt.de/allgemein/12...
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Wolfgang Huber @wkhuber.bsky.social · 08/11/2025
There are two complementary views of scientific advance: the "heroes" view, individual geniuses driving unique one-of-a-kind advances, and the "multiple discovery" or zeitgeist view, that the time is ripe for a discovery, and the details of who makes it first, where, and how are, well, details.(1/3)
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 06/11/2025
📆 For those who haven't turned the page on their calendar yet, here's a reminder. In November, we look at a colorful piece of microscopy art by Jadranka Macas (Institute of Neurology (Edinger Institute), University Hospital Frankfurt). Read more about it here: 👉 nfdi4bioimage.de/resources-an...
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Greifflab @victorgreiff.bsky.social · 22/10/2025
📢 We are announcing the Adaptive Immune Profiling Challenge 2025! Can you predict immune state labels from adaptive immune receptor repertoires? 💰 $10,000 prize pool! 🗓️ Launches Nov 5 on @kaggle.com More Info: uio-bmi.github.io/adaptive_imm...
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Katharina Imkeller @imkeller.bsky.social · 22/10/2025
Our new publication in @cp-immunity.bsky.social: Tertiary lymphoid structures with signs of functional adaptive immune responses in a subset of human gliomas. Association with longer overall patient survival and more immune-permissive tumor microenvironment. doi.org/10.1016/j.im...
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Waggoner Lab @labwaggoner.bsky.social · 21/10/2025
Tertiary lymphoid structures in a subset of gliomas that show signs of functional adaptive immune activation and are associated with longer overall patient survival and an immune-permissive tumor microenvironment @cp-immunity.bsky.social www.cell.com/immunity/ful...
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Johannes Rainer @jorainer.bsky.social · 06/10/2025
Reminder 👇 Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy? ⏲️ 3 year position 📍 Bolzano, 🇮🇹 👉 apply if you like: - #rstats SW development - @bioconductor.bsky.social - large-scale #metabolomics data analysis - hiking ⛰️ 🔗 bit.ly/46AMawx
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Junyan Lu @junyanlu.bsky.social · 01/10/2025
🚀 Postdoc / Bioinformatician in Computational Multi-Omics for Precision Oncology at Heidelberg University Hospital: karriere.klinikum.uni-heidelberg.de/index.php?ac... A great short-term opportunity for anyone looking for a bridge position between PhD, postdoc, or the next career step.
karriere.klinikum.uni-heidelberg.de
Postdoc / Bioinformatician – Computational Multi-Omics for Precision Oncology (m/f/d)
Pflichtfelder sind mit einem (*) markiert.
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Bioconductor @bioconductor.bsky.social · 18/09/2025
EuroBioC2025 is in full swing here in Barcelona! Day 1 was full of great talks, conversations, and that amazing Bioconductor community energy. Excited for what’s ahead today and tomorrow! #EuroBioC2025 #Bioconductor #OpenScience #Community
EuroBioC2025 group photo on PRBB terrace with sea in background.EuroBioC2025 welcome in PRBB auditorium by host Robert Castelo, showing slides with conference sticker and sponsor logos.EuroBioC2025 hexwall banner with the hexwall creator Kevin Rue-Albrecht standing beside it.EuroBioC2025 carved wooden keyring, a gift for all participants, created by Annekathrin Nedwed.
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James Bonfield @jbonfield.bsky.social · 15/09/2025
Heads up: ignore samtools dot org, similarly minimap2 dot com and likely others. It's owned by a known phishing site and while the binaries they offer look valid currently (but note they may be serving us different binaries to others), that could change. Ie: it's not us (Samtools team)! Be warned
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Katharina Imkeller @imkeller.bsky.social · 10/09/2025
PhD position available in my group in Frankfurt. Explore adaptive immune responses in metastatic colorectal cancer using multi-omics and AIRR profiling. #TRR417 @loewe-fci.bsky.social georg-speyer-haus.de/karriere/ste...
georg-speyer-haus.de
Georg-Speyer-Haus: Doctoral Researcher Positions in Colorectal Cancer Research
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Dr. Jean Fan @jef.works · 29/08/2025
Our paper identifying evidence of off-target probe binding in the 10x Genomics Xenium Breast Gene Panel is now available as a reviewed preprint at #eLife elifesciences.org/reviewed-pre... We look forward to revising the paper to incorporate reviewer recommendations and other updates 🧵👇
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Johannes Rainer @jorainer.bsky.social · 18/08/2025
Reminder 📣 still time to apply to the position in my team! - statistical modeling - large scale #metabolomics and #proteomics data - #rstats , #python 📍 Bolzano, ⛰️, 🇮🇹 🔗https://eurac.onboard.org/jobs/Q4301nGV
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Junyan Lu @junyanlu.bsky.social · 22/07/2025
🔬 PhD Position in Bioinformatics! Join my group at Heidelberg University (lu-group-ukhd.github.io) to study AML dormancy & therapy resistance using multi-omics & single-cell data. 👉Apply or share: www.jobvector.de/job/bioinfor...
jobvector.de
PhD Student Bioinformatics, Computational Biology (m/f/d)
Analyze bulk and single-cell multi-omics data generated from in vivo AML models Curate and integrate public datasets (eg scRNA-seq) to derive prior knowledge on AML dormancy Develop and apply integrat...
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Elisa Rosati Scalchi @elisarosix.bsky.social · 28/06/2025
1/6 🧬 NEW COMMENTARY 🧬 Let’s talk about the challenges in immunoglobulin (IG) & T cell receptor (TR) gene nomenclature in the era of modern genomics. A 🧵 on why it’s time to rethink how we name these genes—and what it means for immunogenetics. #IGTR #Genomics #Immunology
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Lisa Buchauer @libuchauer.bsky.social · 02/07/2025
We are currently recruiting a bioinformatics/computational biology postdoc to join the infrastructure project of a newly funded large research consortium (SFB-TRR) on Circadian Medicine between Charité - Universitätsmedizin Berlin and Universität zu Lübeck ⌚ ⏰ ⏱️ 🕰️ !
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NFDI4BIOIMAGE @nfdi4bioimage.bsky.social · 26/06/2025
🌟 #MeetOurDataStewards #1: Ksenia Krooß New to bioimage data? This workshop offers a practical introduction to @nfdi4bioimage.bsky.social and I3D:bio, common challenges and the OMERO platform. Learn about image analysis tools and how to select data repositories. 👉 zenodo.org/record/13861...
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Katharina Imkeller @imkeller.bsky.social · 27/03/2025
Last chance to apply to this PhD position with @mlolab.bsky.social
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Francesca Finotello 🖥️🧬 @francescafinotello.bsky.social · 17/03/2025
🧬🖥️ #iHet code is available at: github.com/Computationa...
github.com
GitHub - ComputationalBiomedicineGroup/iHet
Contribute to ComputationalBiomedicineGroup/iHet development by creating an account on GitHub.
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Katharina Imkeller @imkeller.bsky.social · 11/03/2025
We are recruiting a PhD student in Computational Biology to work on omics data and spatial integration in cellular immunotherapy of cancer. Joint project with the group of Florian Büttner. @loewe-fci.bsky.social agimkeller.github.io/recruit.html
agimkeller.github.io
Open positions - AG Imkeller
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Katharina Imkeller @imkeller.bsky.social · 14/02/2025
Interested in understanding what B cells do in brain tumors? We offer a Master's thesis project in molecular biology / tumor immunology. Apply and join us at Edinger Institute in #Frankfurt @loewe-fci.bsky.social agimkeller.github.io/recruit.html
agimkeller.github.io
Open positions - AG Imkeller
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ProLOEWE @proloewe.bsky.social · 10/02/2025
Many women, one mission: LOEWE top research from Hesse. February 11: Women & Girls in Science Day. @tuda.bsky.social @jlugiessen.bsky.social @goetheuni.bsky.social @unikassel.bsky.social @unimarburg.bsky.social @thm.de @synmikro.bsky.social @ciesek.bsky.social @susanneherold.bsky.social @sgn.one
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Frankfurt Cancer Institute @loewe-fci.bsky.social · 10/02/2025
@imkeller.bsky.social @melanietichet.bsky.social
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