iiinova — where your digital self keeps evolving

Reposted by Johannes Rainer

Bioconductor @bioconductor.bsky.social · 06/08/2026

🎉 Introducing the Bioconductor Student-ECR Council! The Council will support students and ECRs with mentorship, networking, professional development & opportunities to contribute to Bioconductor. Learn more: bit.ly/4giOlJ1 Interested in joining? Connect on Zulip: bit.ly/4yYVxT0

Hexagonal badge labeled "Student ECR" with a signpost reading COMMUNITY, EVENT, and MENTORS topped by a graduation cap, surrounded by icons for virtual learning (headset at laptop), small mentor–mentee figures, speech bubbles for discussion, and a cheering audience with music notes.

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Johannes Rainer @jorainer.bsky.social · 06/08/2026

Our RmzTabM package is now included in @bioconductor.bsky.social (devel version)! ℹ️ core #rstats API for the HUPO-PSI mzTab-M 2.1 standard for reporting #metabolomics and #lipidomics results. 🙏 Gabriele Tomè, @philouail.bsky.social + mzTab-M working group! 🔗https://bit.ly/3RLHIGN

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Reposted by Johannes Rainer

Bioconductor @bioconductor.bsky.social · 05/06/2026

What an amazing few days in Turku at #EuroBioC2026! 🇫🇮 This year's conference brought together 147 participants from 23 countries, showcasing the diversity of the Bioconductor community. A huge thank you to everyone who made EuroBioC2026 memorable. See you in Basel for EuroBioC2027!

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Johannes Rainer @jorainer.bsky.social · 25/05/2026

Vince Carey kicking off the 22nd edition of the #CSAMA @bioconductor.bsky.social summer school in Brixen 🇮🇹 #CSAMA2026

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Johannes Rainer @jorainer.bsky.social · 20/05/2026

Today @philouail.bsky.social received the Open Research Award from Eurac Research for her contributions to open and collaborative #metabolomics . Very well deserved! 💪🥳 #proudPI

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Reposted by Johannes Rainer

de.NBI & ELIXIR Germany @denbi.bsky.social · 08/05/2026

🚀 Registration is OPEN for the de.NBI Summer School 2026 - Bioinformatics for Proteomics! 🧬 🙌 Fully Supported: There are no fees for the event and we will provide accommodation and local travel tickets for the selected candidates 📅 7-11 September 📍 Bochum, Germany 🔗 www.denbi.de/training-cou...

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Johannes Rainer @jorainer.bsky.social · 18/04/2026

bought a new lid for my @frame.work notebook - now I have to start over again adding #stickers 😊 - and to decide what to do with the old one (on top).

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Reposted by Johannes Rainer

Bioconductor @bioconductor.bsky.social · 12/02/2026

🎉 Speaker Reveal – EuroBioC 2026 We’re excited to announce Dr Aura Raulo as a keynote speaker at EuroBioC2026! 🚨Have work to share? Abstract submission is open! Submit here: openreview.net/group?id=bio... Learn more about EuroBioC2026 here: eurobioc2026.bioconductor.org #EuroBioC2026

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Reposted by Johannes Rainer

Davide Risso @davi1893.bsky.social · 06/02/2026

Registration is now open! See: csama2026.bioconductor.eu/registration...

csama2026.bioconductor.eu

CSAMA 2026 Biological Data Science

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Reposted by Johannes Rainer

Bioconductor @bioconductor.bsky.social · 05/02/2026

🔔 The Bioconductor Developers’ Forum is back! This monthly forum is for developers & users to discuss infrastructure, future tools, and community-driven changes. 🗓 When: Last Thursday of every month ⏰ Time: 4pm GMT First session: Feb 26, 2026 More info: bioconductor.org/developers/d...

Banner for the Bioconductor Developers’ Forum announcing its return. The text reads: “Developers’ Forum is back! The Developers’ Forum aims to provide a regular platform for developers and users to discuss software and hardware infrastructure and future developments in the Bioconductor project. Last Thursday of every month, 4pm GMT. First presentation: Feb 26, 2026 — Native GPU compute access in R: Metal, OpenCL, CUDA, and heterogeneous compute hardware frameworks — Nicholas Cooley.” The graphic shows illustrated people collaborating around a large smartphone.

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Reposted by Johannes Rainer

Helena Lucia Crowell @helucro.bsky.social · 02/02/2026

Registration now open for CSAMA! 📜 csama2026.bioconductor.eu Highly recommend for learning data science with a scenery, plus a fantastic crowd of students and faculty alike! 📸 from the traditional mid-week hike during last year’s edition.

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Johannes Rainer @jorainer.bsky.social · 07/01/2026

let's get the community rolling 💪! Thanks to Vilhelm Suksi from @antagomir.bsky.social 's group for the contribution of the notame vignette 🙌

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Reposted by Johannes Rainer

Phili @philouail.bsky.social · 07/01/2026

🚀 New release: Metabonaut v1.4.0 is here! 1️⃣ New integration with the notame package for robust feature selection. 2️⃣ Added GNPS2 FBMN export for molecular networking. Explore the updates: rformassspectrometry.github.io/Metabonaut/ #Metabolomics #RStats #OpenScience #MassSpec #Bioconductor

rformassspectrometry.github.io

Exploring and Analyzing LC-MS Data

This resource hosts tutorials and end-to-end workflows describing how to analyze LC-MS/MS data, from raw files to annotation, using Bioconductor packages.

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Reposted by Johannes Rainer

Tuomas Borman @tuomasborman.bsky.social · 23/12/2025

Little over a month left to submit an abstract to #EuroBioC2026 (eurobioc2026.bioconductor.org/pages/submis...), which will be held in Turku, Finland. Here are a couple of Finnish Christmas traditions that you might not know:

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Reposted by Johannes Rainer

Davide Risso @davi1893.bsky.social · 23/12/2025

This year's CSAMA Biological Data Science Summer School in Brixen takes place 24-29 May 2026. Topics: single-cell and spatial omics, statistics, multi-omics, ML/AI, all very hands-on using R / Bioconductor! More info: csama2026.bioconductor.eu Registration: 1 Feb 2026! @bioconductor.bsky.social

csama2026.bioconductor.eu

CSAMA 2026 Biological Data Science – CSAMA 2026 Biological Data Science

22nd Edition Bressanone-Brixen, Italy 24-29 May 2026

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Johannes Rainer @jorainer.bsky.social · 18/12/2025

and there will also be lectures and workshops for #MassSpectrometry - based #proteomics and #metabolomics analysis in #rstats with @bioconductor.bsky.social 😎

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Reposted by Johannes Rainer

Wolfgang Huber @wkhuber.bsky.social · 17/12/2025

CSAMA 2026 - Biological Data Science Summer School Bressanone-Brixen, South Tyrol / Italy 24-29 May 2026 csama2026.bioconductor.eu Statistical & computational methods for single cell and spatial omics, with lectures and hands-on exercises in R/Bioconductor.

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Johannes Rainer @jorainer.bsky.social · 16/12/2025

was a great #computational #metabolomics seminar yesterday in Ghent with @jjjvanderhooft.bsky.social Matthijs Vinck and myself! thanks @lynnvanhaecke.bsky.social for inviting us 🙏

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Reposted by Johannes Rainer

Stefano Mangiola @stemang.bsky.social · 07/12/2025

It's official! The #tidyomics blog is up! 🚀 Here, the introductory post tidyomics.github.io/tidyomicsBlo... This blog aims to publish not only news about our community but also anything related to tidy interfaces, opinions, events, and more. Plz share! 🙏 @bioconductor.bsky.social #rstats

tidyomics.github.io

The Tidyomics Ecosystem – tidyomicsBlog

An introduction to the tidyomics ecosystem, including principles, core packages, publications, and community resources for tidy omic analysis.

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Johannes Rainer @jorainer.bsky.social · 03/12/2025

New preprint 📃: doi.org/10.64898/202... 👉 characterization of liver steatosis through blood #metabolomics and #proteomics Great work from Marilyn! and big thanks to all co-authors 🙌

doi.org

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Wolfgang Huber @wkhuber.bsky.social · 01/12/2025

Join EMBL's Interdisciplinary Postdoc Programme! 3 years funding, self-designed interdisciplinary project co-led between EMBL PI and PI in one of EMBL's actual, prospect or associate member states. In particular: AI&Theory, use mathem. models, physics principles and AI www.embl.org/about/info/p...

embl.org

EIPOD-LinC Fellowship Programme – Postdoctoral Programme

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Reposted by Johannes Rainer

Tuomas Borman @tuomasborman.bsky.social · 25/11/2025

Representing EuroBioC2026 at the @abacbs.bsky.social Conference this week. The next European @bioconductor.bsky.social Conference will be in Turku, Finland! #ABACBS2025 #EuroBioC2026

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Reposted by Johannes Rainer

Bioconductor @bioconductor.bsky.social · 27/11/2025

🚀 EuroBioC2026 – Call for Abstracts is Now Open! We invite submissions for short talks, posters, and workshops for EuroBioC2026 by Jan 30, 2026. 👉 Submit here: openreview.net/group?id=bio... ⚠️ Note: Register on OpenReview at least two weeks before the abstract deadline to be able to submit.

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Reposted by Johannes Rainer

Stefano Mangiola @stemang.bsky.social · 27/11/2025

The Euro Bioc 2026 in Turku is official!

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Johannes Rainer @jorainer.bsky.social · 17/11/2025

📣 join in my team 🤗! 👇 - #rstats software development - contribute to @bioconductor.bsky.social and @galaxyproject.bsky.social - large-scale #MassSpectrometry #metabolomics and #proteomics data analysis - hiking ⛰️ 📍 Bolzano, 🇮🇹 ⏲️ 3 year position 🔗 full description: bit.ly/4pyXi3V please share

bit.ly

Researcher in Software Development for Large-Scale Mass Spectrometry Data Analysis (MetaRbolomics4Galaxy)

Eurac Research · Bozen/Bolzano

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Johannes Rainer @jorainer.bsky.social · 07/11/2025

yey! also spotted hackathon co-lead @philouail.bsky.social - I was only virtually attending 😔 - and very likely missed a lot of fun

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Johannes Rainer @jorainer.bsky.social · 31/10/2025

Happy to announce that also our #SpectriPy package for cross-language #Rstats - #Python #MassSpectrometry data analysis is part of the just released @bioconductor.bsky.social release 3.22 🥳 This was a great collaborative effort! Thanks to all contributors! 💪

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Reposted by Johannes Rainer

Bioconductor @bioconductor.bsky.social · 31/10/2025

🚀 Bioconductor 3.22 is released! Thanks to all developers and community members for contributing to the project! 🔗 Please see the full release announcement here: bioconductor.org/news/bioc_3_...

bioconductor.org

Bioconductor - Bioconductor 3.22 Released

The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and…

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Reposted by Johannes Rainer

Bioconductor @bioconductor.bsky.social · 29/10/2025

🧬 EuroBioC2026 is coming to Turku, Finland, from June 3–5, 2026! Expect 3 exciting days with the Bioconductor community, showcasing the latest advances in Bioconductor software and emerging technologies shaping computational biology. 👉 More details soon at eurobioc2026.bioconductor.org

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Reposted by Johannes Rainer

HUMAN Doctoral Network @human-dn.bsky.social · 17/10/2025

🔬 New in #MassSpectrometry and @jorainer.bsky.social's team! SpectriPy bridges R & Python for data analysis. Breaking language barriers → more flexible & reproducible science. 🚀 🔗bit.ly/48L9yJa #RStats #Python #Bioinformatics #OpenSource

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Reposted by Johannes Rainer

Wolfgang Huber @wkhuber.bsky.social · 09/10/2025

My take: Engineering *is* important. Ideas are cheap. Novelty is overrated. "Hyperparameter tuning" is a cynically dismissive term for something that is in fact the real, difficult problem.

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Reposted by Johannes Rainer

Bioconductor @bioconductor.bsky.social · 10/10/2025

🚀 New on the Bioconductor Blog: GPU Support in Bioconductor Bioconductor is building better support for GPU-accelerated package development for faster and more scalable analysis workflows Learn how package maintainers can leverage this new GPU infrastructure: blog.bioconductor.org/posts/2025-1...

blog.bioconductor.org

GPU Support in Bioconductor – Bioconductor community blog

Support GPU-accelerated Bioconductor packages

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Reposted by Johannes Rainer

HUMAN Doctoral Network @human-dn.bsky.social · 10/10/2025

New #HUMAN paper out! 🩸 Our partners from CEMBIO explored blood microsampling (DBS, qDBS, VAMS) for untargeted #lipidomics using high-throughput LC-MS. Volumetric devices show plasma-like precision & recovery! 🔗bit.ly/476qWXw

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Reposted by Johannes Rainer

Florian Huber @me-datapoint.bsky.social · 06/10/2025

New #matchms release (0.31)🚀 With functionalities that were on our TODO list for a looooong time: Flash Entropy and BLINK scores! The new "FlashSimilarity" allows computing modified cosine, spectral entropy etc., about 100x faster (or more if you use Linux). #Python #opensource #massspec

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Johannes Rainer @jorainer.bsky.social · 06/10/2025

Reminder 👇 Interested in improving our R tools for #MassSpectrometry data analysis and integrating them into Galaxy? ⏲️ 3 year position 📍 Bolzano, 🇮🇹 👉 apply if you like: - #rstats SW development - @bioconductor.bsky.social - large-scale #metabolomics data analysis - hiking ⛰️ 🔗 bit.ly/46AMawx

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Robert Castelo @robertclab.bsky.social · 19/09/2025

#EuroBioC2025 is over and it has been a blast! Thanks to all participants that came to @prbb.org for contributing to make such an enjoyable event and special thanks to the support from our sponsors, the organizing institutions @upf.edu @isglobal.org and the European @bioconductor.bsky.social Society

Group picture with all participants at EuroBioC2025

Vince Carey, Bioconductor project lead, giving the opening keynote lecture.

Audience carefully listening to Vince Carey in the Auditorium.

Christophe Vanderaa giving a workshop on msqrob2, a robust modelling workflow for mass spectrometry-based proteomics

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Bioconductor @bioconductor.bsky.social · 18/09/2025

EuroBioC2025 is in full swing here in Barcelona! Day 1 was full of great talks, conversations, and that amazing Bioconductor community energy. Excited for what’s ahead today and tomorrow! #EuroBioC2025 #Bioconductor #OpenScience #Community

EuroBioC2025 group photo on PRBB terrace with sea in background.

EuroBioC2025 welcome in PRBB auditorium by host Robert Castelo, showing slides with conference sticker and sponsor logos.

EuroBioC2025 hexwall banner with the hexwall creator Kevin Rue-Albrecht standing beside it.

EuroBioC2025 carved wooden keyring, a gift for all participants, created by Annekathrin Nedwed.

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Reposted by Johannes Rainer

Wolfgang Huber @wkhuber.bsky.social · 17/09/2025

Dream job - research software engineer, in one of the most beautiful parts of the world

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Johannes Rainer @jorainer.bsky.social · 17/09/2025

Interested in integrating our R tools into Galaxy? 👉 apply if you like: - #rstats SW development - contributing to @bioconductor.bsky.social and @galaxyproject.bsky.social - large-scale #metabolomics data analysis - hiking ⛰️ 📍 Bolzano, 🇮🇹 ⏲️ 3 year position 🔗 info and apply: bit.ly/46AMawx

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Johannes Rainer @jorainer.bsky.social · 18/08/2025

Reminder 📣 still time to apply to the position in my team! - statistical modeling - large scale #metabolomics and #proteomics data - #rstats , #python 📍 Bolzano, ⛰️, 🇮🇹 🔗https://eurac.onboard.org/jobs/Q4301nGV

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Bioconductor @bioconductor.bsky.social · 17/07/2025

🌟 Bioconductor 2025 CAB & TAB nominations are open! Join our advisory boards to support community growth or guide technical strategy. 📅 Apply by Aug 31 CAB: forms.gle/8NYxRGhprfuN... TAB: forms.gle/eqef9ThpUypc... #Bioconductor #RStats

Bioconductor nominations graphic with CAB and TAB illustrations and www.bioconductor.org

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Johannes Rainer @jorainer.bsky.social · 15/07/2025

Interested in a #PostDoc / researcher position in my team at Eurac Research 🇮🇹? 👉 apply if you like - analyzing large-scale #proteomics and #metabolomics data - #rstats and/or #Python - reproducible research - hiking ⛰️ (on weekends!) 🔗 eurac.onboard.org/jobs/Q4301nGV

eurac.onboard.org

Post-Doc Researcher for the evaluation of external influences on blood proteomics and metabolomics data

Eurac Research · Bozen/Bolzano

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Michael Love @mikelove.bsky.social · 26/06/2025

Tuomas Borman from @antagomir.bsky.social lab demonstrating why data containers are so useful (book >> loose pages) Online book for microbiome analysis: microbiome.github.io/OMA/docs/dev... #GBCC2025

Speaker at podium holding book in one hand and loose pages in another

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Florian Huber @me-datapoint.bsky.social · 26/06/2025

@jorainer.bsky.social and @philouail.bsky.social gave a great overview of the ecosystem around #RforMassSpectrometry and #XCMS! #MetSoc25 I am super glad they now also provide options to combine with #Python and #matchms (thanks🙏)

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