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Laurence Ettwiller

@ettwiller.bsky.social
134 followers 80 following 45 posts

Scientist working at New England Biolabs. Tweets and comments represent my personal opinion and do not necessarily reflect the opinions of New England Biolabs.

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Reposted by Laurence Ettwiller
Institut Pasteur | 130 years of biomedical research @pasteur.fr · 28/07/2026
Chloé Baum @chloebaum.bsky.social leads the wet-lab team at Institut Pasteur's Biomics. With the PromethION 2 Integrated, she sequences full-length dengue & chikungunya genomes in a single read and runs 96 bacterial genomes per flow cell. #Genomics Interview ↘️ nanoporetech.com/blog/advanci...
Inside the Biomics technology platform with Chloé Baum. Bacterial genome sequencing using Oxford Nanopore technology.
Credit © Alexandre Darmon / Art in Research
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Gang Fang @gangfang.bsky.social · 19/05/2026
Glad that our paper is out today in @cp-cellhostmicrobe.bsky.social A baby received a routine course of amoxicillin. In that infant's #gut 💩, we could see something remarkable, already present **before** the antibiotic arriveda single strain 🦠 of #Akkermansia muciniphila was already running 1/n
cell.com
Epigenetic phase variation in the gut microbiome enhances bacterial adaptation
Ni et al. show that epigenetic phase variation (ePV)—gene expression changes mediated by bacterial DNA methylation—is prevalent in the human gut microbiome and associated with fluctuating environments...
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Laurence Ettwiller @ettwiller.bsky.social · 20/04/2026
Those amazing #phages 🦠 figured out 5mC chemistry before we did: 📄 Out today in @MolecularCell we describe a 5mC-selective #deaminase family in environmental phage genomes with broad applications for #5base #sequencing #epigenetics #DNAmethylation #genomics #NGS 🧬🧪 www.cell.com/molecular-ce...
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Laurence Ettwiller @ettwiller.bsky.social · 19/04/2026
Really nice paper on Mu-encoded Mom enzyme that catalyzes 6-NcmdA by transferring glycine from charged tRNA-Gly to the N6 position of adenine . www.nature.com/articles/s41... Congrats to all authors !
nature.com
A single viral enzyme drives tRNA-dependent hypermodification of DNA at adenine - Nature Communications
Phages install chemically complex DNA hypermodifications as anti-defense strategies. Here, the authors uncover transfer and rearrangement of glycine on dA driven by Mom, a tRNA-dependent DNA aminoacyl...
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Laurence Ettwiller @ettwiller.bsky.social · 18/04/2026
Protein-templated synthesis of dinucleotide repeat DNA by an antiphage reverse transcriptase | Science www.science.org/doi/10.1126/...
science.org
Protein-templated synthesis of dinucleotide repeat DNA by an antiphage reverse transcriptase
Defense-associated reverse transcriptases (DRTs) are widespread bacterial anti-phage systems that use unconventional mechanisms of polynucleotide synthesis. We show that DRT3, which comprises two dist...
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Reposted by Laurence Ettwiller
Oliver Strimpel @geologybites.bsky.social · 25/12/2025
🧪⚒️ Just posted: Carina Hoorn on the evolution of the Amazon basin. It was the rise of the Andes and the subsidence induced by the subduction under S. America's W coast that drove diversification. Listen and find out why. #geology #earth #Amazon
Amazonian blackwater lake (left), rainforest, and whitewater river.  The whitewater river is laden with sediments from erosion of the Andes.

Photo Rhett A. Butler for MongabayMiocene fossil palm pollen grain (40 µm across) from the Pebas Wetland System.  This species and others found with it are characteristic of lacustrine-estuarine conditions with wetland vegetation, peripheral forest, and a diverse aquatic fauna.  The Amazon pink dolphin Inia geoffrensis is derived from a marine species.

Michel ViardModern plants that are still distributed in the former marine incursion pathway which is thought to have left a geochemical imprint in the soils on top of the Solimões/Pebas formation.  It has been shown that the bedrock and soils of the Pebas/Amazonas are much richer due either due to general chemistry or chemistry related to marine incursions.
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Laurence Ettwiller @ettwiller.bsky.social · 24/10/2025
Excited to share our new study using metagenomes to reveal key players in 2,6-Diaminopurine (dZ) Biosynthesis : We explore how some bacteriophages swap dA for 2-aminoadenine (dZ) in their genomes to evade bacterial defenses. #PhageBiology #Metagenomics #bacteriophage www.biorxiv.org/content/10.1...
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Laurence Ettwiller @ettwiller.bsky.social · 13/10/2025
So happy to share our new study “A Bait-and-Switch strategy links phenotypes to genes coding for Polymer-Degrading Enzymes in Intact Microbiomes.” In this work, we discovered novel chitinases directly on microbiome; a study brilliantly led by Dr. Colleen Yancey www.biorxiv.org/content/10.1...
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Oliver Strimpel @geologybites.bsky.social · 17/09/2025
🧪⚒️Just released an episode on the dynamics of subduction zones with Claudio Faccenna. Not only do trenches roll back and move laterally, they also advance and flip polarity. But when they penetrate the viscous lower mantle they get locked in place. Enjoy listening!
The figure shows sections of P-wave tomography anomalies along the yellow lines on the map (Fukao & Obayashi, 2013), seismicity (orange dots on profiles; Engdahl et al., 1998), plate velocities (orange vectors; Argus et al., 2011), and volcanoes (cyan inverted triangles; Siebert & Simkin, 2023).  The Western Pacific and Japan subduction zones (the two most northerly zones) do not appear to penetrate the lower mantle, unlike those of Indonesia and Kermadec (north of New Zealand).  Whether a slab penetrates the lower mantle depends on factors such as the duration of subduction and the angle at which the slab reaches the 660-km discontinuity, with steeper angles favoring descent.

Becker, T and Faccenna, C. (2025), Tectonic Geodynamics, Princeton University PressSubduction zones along the west coast of the Americas.  In the podcast, Faccenna described how the slab subducting below the Andes has entered the lower mantle where its lateral movement is restricted by the higher viscosity there.  The subduction zones beneath northern South America and Central America show evidence of penetration into the lower mantle, reaching depths of 1,300 km or more.  By contrast, the younger Caribbean subduction zone does not. 

Becker, T and Faccenna, C. (2025), Tectonic Geodynamics, Princeton University PressLeft: map showing seafloor ages in the western Pacific.  The back-arc basins shown appear mainly as the red and orange regions, i.e., having the youngest ages of 0 and 30 million years.  Center: more detailed seafloor age map of the Izu-Bonin-Marianas region.  Right: P-wave tomography sections along the green lines labeled A, B, and C, revealing the varying shape of the subduction zone going from north to south.

The western Pacific subduction zone is characterized by back-arc extension in the overriding plate that began within the last 30 million years (left panel).  Tomography and seismicity data show that along the Izu–Bonin region (section B1–B2), a double subduction system is present, resulting from subduction of both the Pacific Plate (to the east) and the Philippine Plate (to the west).

Becker, T and Faccenna, C. (2025), Tectonic Geodynamics, Princeton University PressThe Izu–Mariana subduction system is unique in that the trench is advancing toward the overriding plate (right panel).  Bottom left: tomographic section along the red line on the map at right shows the two subducting slabs.  Top left: numerical model of single subduction and double subduction.  The double subduction simulation replicates quite a few features appearing on the tomographic section, such as the apparent flattening out of the subducting slabs between the depths of 400 and 600 km.  In a single-slab system, the trench migrates backward, whereas in a double-slab system, the rear slab drives trench advance.  The simulation also reproduces the tomographic section (bottom left, section along the red line on the map at right), which clearly shows the presence of two subducting slabs.

Faccenna, C. et al. (2018), Tectonophysics, 746, 229
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 03/08/2025
A novel NGS-compatible Enzymatic Strategy Enables Carryover Contamination Removal and Enhances Sequencing Performance. www.biorxiv.org/content/10.1101/202…
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Laurence Ettwiller @ettwiller.bsky.social · 03/08/2025
Dream of avoiding carryover contamination in your NGS experiment? Check out our latest preprint: 🧬 “A Novel NGS-Compatible Enzymatic Strategy Enables Carryover Contamination Removal and Enhances Sequencing Performance” www.biorxiv.org/content/10.1...
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Eric Topol @erictopol.bsky.social · 23/06/2025
This is wild! Engineering E. coli bacteria to turn plastic waste into paracetamol (Tylenol) www.nature.com/articles/s41... www.nature.com/articles/s41...
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Di Jiang @dijiang319.bsky.social · 02/05/2025
🧬🧫🦠 @science.org Bacterial reverse transcriptase synthesizes long poly-A–rich cDNA for antiphage defense | Science www.science.org/doi/10.1126/... #microbiology #bacteriophage #antiphage #immunity #DNA #RNAsky #RT #Cryo-EM #DRT9
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PLOS Biology @plosbiology.org · 08/04/2025
The BASEL collection of E. coli #phages is limited by its host strain. @humollidorentina.bsky.social @damienpiel.bsky.social @aharms485.bsky.social &co use a modified host to add 36 new phages, revealing roles of O-antigen in recognition & R-M systems in immunity @plosbiology.org 🧪 plos.io/4jirGvX
A fanciful depiction of BASEL phages on a roadmap. Credit: Fabienne Estermann
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Laurence Ettwiller @ettwiller.bsky.social · 31/03/2025
Proxi-RIMS-seq now enables direct study of epigenetic modifications in microbiomes using Illumina sequencing on genome-resolved microbiomes ! Learn more in our latest work with @phasegenomics: doi.org/10.1093/nar/...
doi.org
pendingpublications
Pending Publication
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Stand Up For Science France @standupforscifr.bsky.social · 07/03/2025
#StandUpForScience #Toulouse @sufs-paris-rp.bsky.social @emmanuelleperez.bsky.social "C'est très important d'avoir un lien très fort entre la recherche et la formation, de former à l'esprit scientifique pour se confronter à la complexité du monde d'aujourd'hui" www.francetvinfo.fr/replay-jt/fr...
francetvinfo.fr
Le 14h/16h du vendredi 7 mars 2025
Le 14h/16h du vendredi 7 mars 2025. JT franceinfo consultable en ligne en replay pour voir et revoir ce journal télé qui décrypte l'actualité.
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Saimi Hanma ⚔️ サイミ @saimihanma.bsky.social · 20/01/2025
Hair ice!! This is caused by a fungus in the wood. I'm always excited to find it when it gets cold.
A twig with ice growing out like hair in delicate strands
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Axel Visel @axelvisel.bsky.social · 17/01/2025
Genomes assembled from #metagenomes (a.k.a. MAGs) are awesome and have revolutionized our ability to study uncultivated microbes ...BUT: they still don't capture a lot of the 🦠 species that are out there New @jgi.doe.gov paper led by Dongying Wu and Natalia Ivanova: www.science.org/doi/10.1126/...
Venn diagram illustrating microbial diversity of bacteria and archaea captured by isolates, metagenome-assembled genomes (MAGs) from NCBI and IMG, and metagenomes from IMG. A large portion of microbial diversity, labeled as 'Microbial Dark Matter,' represents species not captured by isolates or MAGs. Image modified from https://www.science.org/doi/10.1126/sciadv.adq2166
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Anna Kuchina @annabiosys.bsky.social · 16/01/2025
How can single-cell transcriptomics profile phage infection in individual microbial cells? Check out our preprint with Anika Gupta, Norma Morella, Dmitry Sutormin & other authors, in collaboration with Georg Seelig (UW) and Neel Dey (Fred Hutch). www.biorxiv.org/content/10.1...
biorxiv.org
Combinatorial phenotypic landscape enables bacterial resistance to phage infection
Success of phage therapies is limited by bacterial defenses against phages. While a large variety of anti-phage defense mechanisms has been characterized, how expression of these systems is distribute...
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Reposted by Laurence Ettwiller
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 12/01/2025
Our paper on 🦠queuosine 34 modification of tRNA tyrosine and antibiotic response is finally out in its final form in @eLife ... and quite different from the preprint version. Many thanks to reviewers, editors and kudos to all authors🙏 elifesciences.org/articles/96317
elifesciences.org
Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification
tRNA Q34 modification impacts tyrosine codon decoding and leads to proteome reprogramming in response to antibiotic stress in Vibrio cholerae.
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Reposted by Laurence Ettwiller
Aude Bernheim @audeber.bsky.social · 09/01/2025
What is the diversity of antiphage systems out there ? We used protein and genomic language models (and defense score!) to start bringing some answers: >45 000 protein families. Leb by E. Mordret. www.biorxiv.org/content/10.1... Interactive UMAP to have fun mdmparis.github.io/antiphage-la...
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 23/12/2024
Methyl-CODEC enables simultaneous methylation and duplex sequencing www.biorxiv.org/content/10.1101/202…
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ImmunoSketch @actuallypublished.bsky.social · 19/12/2024
Tracking bacterial ‘seeds’ in new soil reveals how they grow, adapt, and pave the way for next-gen microbiome therapies. @gangfang.bsky.social @biorxivpreprint.bsky.social t.co/QisGjqmInv #ImmunoSky 🧪
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Laurence Ettwiller @ettwiller.bsky.social · 12/12/2024
Transposable element exonization generates a reservoir of evolving and functional protein isoforms: Cell www.cell.com/cell/fulltex...
cell.com
Transposable element exonization generates a reservoir of evolving and functional protein isoforms
Transposable element exonization by unannotated splicing events produces stable protein isoforms with acquired functions that are subject to evolutionary selection.
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Reposted by Laurence Ettwiller
Jan Broder Engler @jbengler.de · 10/12/2024
Stunning free #science vector art for your next poster, paper or talk 🤩 The #NIH has compiled over 2,000 illustrations including swatches and pattern brushes bioart.niaid.nih.gov #rstats #dataviz #phd #illustration
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Gang Fang @gangfang.bsky.social · 11/12/2024
Glad to share our preprint 🏃 **LongTrack**: long read metagenomics-based precise tracking of bacterial strains (and their genomic changes!) after 💩 fecal microbiota transplantation. A 4+ years journey and tour de force by ** @yufan01.bsky.social ** & team. A long 🧵 www.biorxiv.org/content/10.1...
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Laurence Ettwiller @ettwiller.bsky.social · 09/12/2024
www.biorxiv.org/content/10.1... Our study published today on #bioRxiv describe the identification of a deaminase that converts 5mC to T, enabling direct sequencing of the human methylome and genome. This achievement was made possible through a collaborative effort across all departments at #NEB.
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Laurence Ettwiller @ettwiller.bsky.social · 26/11/2024
Happy to have found a home again at #bluesky 🙂
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