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Hermoine Venter

@hjvsci.bsky.social
223 followers 477 following 6 posts

Microbiologist 🦠🧫 at the University of Tromsø 🇿🇦🇳🇴 Bacterial defence systems, phages, evolution 🤓

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Reposted by Hermoine Venter
Malcolm White @mfwhite2.bsky.social · 01/10/2026
Nicely executed study on phage anti-defence rdcu.be/M7mrq41uU7Ma
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Ellinor Alseth @ellinoralseth.bsky.social · 11/09/2026
What a Friday, finally seeing this published in @cp-trendsmicrobiol.bsky.social! We hope this will be of interest to anyone working in the bacterial immune system field (or microbiology in general), and who wants an evolutionary take on it 🦠🧫 Open Access link: authors.elsevier.com/a/1nllx,L%7E...
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Philip Ball @philipcball.bsky.social · 31/08/2026
This is good. blog.genesmindsmachines.com/p/im-sorry-y...
blog.genesmindsmachines.com
I'm sorry, you're not going to die from an AI-engineered supervirus
God save us from economists who think they can competently talk about biology
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Typas Lab @typaslab.bsky.social · 20/08/2026
Excited to share our paper with @savitski-lab.bsky.social, led by @tarabartolec.bsky.social, Karin Mitosch & Clément Potel, out now in @nature.com. We show that T7 phage broadly disables bacterial defenses using a unique ‘loose cannon’ protein kinase. www.nature.com/articles/s41...
nature.com
Pervasive phosphorylation by phage T7 kinase disarms bacterial defences - Nature
The T7 bacteriophage deactivates bacterial defence systems through T7K phosphorylation of nearly all host and phage proteins during infection.
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Sultan Nazir @sultannazir.bsky.social · 07/08/2026
🚨 New paper with @bramvandijk.bsky.social, out now in Genome Biology and Evolution! Why do accessory genes so often hitch a ride on temperate phages? We show that spatial structure alone can tip selection toward a prophage locus over a chromosomal one. doi.org/10.1093/gbe/... 🧵 Two mechanisms:
doi.org
Viral Lifecycle Dynamics and Spatial Structure Explain Why Accessory Genes Are Associated With Temperate Phages
Abstract. Genes encoding for virulence factors are frequently found on prophages, yet the evolutionary forces driving this association remain unclear. The
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Sofia Luengo-Woods @sluengo.bsky.social · 30/07/2026
We’re so excited to share our new paper, where we tackle the wealth of structural and functional diversity of anti-phage sensors across bacteria (1/6)
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Hermoine Venter @hjvsci.bsky.social · 30/07/2026
Glad to have this out in the world 🤓 If you want to genetically modify Staphylococcus haemolyticus, you have to dodge its phage defence systems! 🧬🧫 www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Genetic engineering of Staphylococcus haemolyticus: overcoming restriction-modification barriers and targeting virulence genes
Staphylococcus haemolyticus is an emerging multidrug-resistant nosocomial pathogen noted for robust biofilm formation and complex restriction-modification (RM) systems that hinder genetic manipulation...
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Craig Kaplan @triggerloop.bsky.social · 22/07/2026
Some bacteria use the CRISPR/Cas systems as transcriptional repressors of other anti-phage systems, such that when CRISPR interfered with, gene expression of repressed anti-phage systems goes up www.nature.com/articles/s41...
nature.com
CRISPR–Cas regulates expression of embedded anti-phage defence systems - Nature
CRISPR–Cas systems transcriptionally tune diverse innate defences using CRISPR RNA-like guides to balance antiviral protection with fitness, and hyperactivate these defences when compromised, establis...
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Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 21/07/2026
1/4 Every good defence needs a backup! 🛡️⚔ Out now in @natrevmicro.nature.com our Comment on "𝗶𝗺𝗺𝘂𝗻𝗲 𝘀𝗮𝗳𝗲𝗴𝘂𝗮𝗿𝗱𝗶𝗻𝗴"! 🎉 🔗 www.nature.com/articles/s41...
nature.com
Immune safeguarding as a conserved principle of antiviral defence - Nature Reviews Microbiology
All organisms defend against viral infections through active immunity mechanisms that clear the virus or population-level mechanisms that cause regulated cell death. Recent research increasingly shows...
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Cell Host & Microbe @cp-cellhostmicrobe.bsky.social · 20/07/2026
A family of lanthipeptides with anti-phage function Discovery of 2,000+ lanthipeptide biosynthetic gene clusters with anti-phage potential. Lanthivirins inhibit phage replication by targeting phage proteins & interfering with phage DNA replication. www.cell.com/cell-host-mi...
cell.com
A family of lanthipeptides with anti-phage function
Shomar, Guillaume, et al. report the genomics-driven discovery of a family of more than 2,000 lanthipeptide biosynthetic gene clusters with anti-phage potential. They experimentally demonstrate anti-p...
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Joshua Weitz @joshuasweitz.bsky.social · 15/07/2026
Bacteriophage continue to have so much to teach us. It's in our interest to understand how they work and impact human & environmental health. New joint work led by @mariandm.bsky.social & @rantahan.bsky.social inferring single-cell latent period & burst size heterogeneity from population dynamics.
science.org
Inferring single-cell heterogeneity of bacteriophage lysis-associated life-history traits from population-scale dynamics
Theory-guided experiments reveal single-cell heterogeneity of lysis-associated bacteriophage traits from population scale data.
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Sam Benc 🐟 @nonvieta.bsky.social · 16/07/2026
False solutions to the environmental crises are plentiful and you can usually identify them quickly by how little they disrupt economic industry or ask for any meaningful change. You can’t solve a leaky pipe without turning off the water first.
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Hermoine Venter @hjvsci.bsky.social · 08/07/2026
Presenting a poster at the Viruses of Microbes conference! This was the work of our Master's student @Marriam Aslam. We tried phage trainimg to make phage Mystique a better killer...She wasn't really into it 😅
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Mark O. Martin @markowenmartin.bsky.social · 28/06/2026
Context is important. Especially for microbiologists.
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Michael Baym @baym.lol · 25/06/2026
Latest work from my lab, in which @amycrobes.bsky.social probes the evolutionary consequences of prophages potentiating death at otherwise sublethal antibiotic doses
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Emmanuele Severi @emmseveri.bsky.social · 11/06/2026
#microsky #phagesky #phage #synbio www.nature.com/articles/s41...
nature.com
Synthetically designed anti-defense proteins overcome barriers to bacterial transformation and phage infection - Nature Communications
Bacterial defense systems act as barriers to phage infection and plasmid transformation. Here, Garb et al. designed synthetic proteins that disable bacterial defense systems, enabling phages to infect...
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Erin Huiting @erinhuiting.bsky.social · 22/06/2026
From my time with @jbdsf.bsky.social: Our latest CBASS story is now published! ‘CBASS’ is the ancestral origin of anti-viral cGAS immunity and encoded in diverse bacteria. For the first time, we show that CBASS enables cell survival (vs cell death) to protect bacteria from phage infection. More ⬇️
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Emmanuele Severi @emmseveri.bsky.social · 16/06/2026
#microsky #phagesky AF3 models of Klebsiella #phage RBPs. This was done for coliphages and (to a lesser extent) phages against A. baumannii. Field heating up! www.biorxiv.org/content/10.6...
biorxiv.org
Structural modularity of receptor-binding proteins underlies host-range strategy diversification in Klebsiella pneumoniae phages
Bacteriophage receptor-binding proteins (RBPs) determine bacterial host recognition and are central to phage host-range evolution, yet the structural principles governing how RBPs diversify and expand...
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Jesse Shapiro @bjesseshapiro.bsky.social · 05/06/2026
Cheap and easy method for nanopore sequencing phage DNA directly from plaques. Proud of lab members Brenna and Patrick for doing this work *with absolutely no help from me* !! www.nature.com/articles/s41...
nature.com
Same-day tagmentation PCR-based whole genome sequencing of bacteriophage genomes from a single plaque without DNA extraction - Scientific Reports
Scientific Reports - Same-day tagmentation PCR-based whole genome sequencing of bacteriophage genomes from a single plaque without DNA extraction
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Christopher Frøhlich @cfr016.bsky.social · 05/06/2026
We studied the causes of #collateralsensitivity from a single enzyme perspective using and how stable such #tradeoffs are during #coselection. In short, resistance evolution can cause strong but migigatable trade-offs. Preproof is now available on @JMB: www.sciencedirect.com/science/arti...
sciencedirect.com
Mechanistic origins and evolutionary erosion of collateral sensitivity in a β-lactamase
As antibiotic discovery stalls, exploiting collateral sensitivity, where resistance to one drug increases sensitivity to another, offers a promising r…
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Rafael Pinilla-Redondo (Rafa) @rafomics.bsky.social · 02/06/2026
Phages invented sgRNAs before humans!! 🧬 Obviously, for mischief… 😈 Loved seeing this story unfold!
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Vivek Mutalik @vivekmutalik.bsky.social · 16/04/2026
www.nature.com/articles/s41... #phage #phagesky #microsky
nature.com
Phage-assisted evolution of allosteric protein switches - Nature Communications
Allostery enables proteins to respond to signals but remains difficult to engineer. Here, Southern et al. developed a phage-assisted evolution framework for allosteric protein switches yielding high-p...
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Tominaga K. (tomiken) @pacyc184.bsky.social · 14/04/2026
Epigenetic regulation in prokaryotes: transcriptional and phenotypic outcomes of DNA methyltransferase activity | FEMS Microbiology Reviews | Oxford Academic academic.oup.com/femsre/advance-art…
dx.doi.org
Epigenetic regulation in prokaryotes: transcriptional and phenotypic outcomes of DNA methyltransferase activity
This review shows how DNA methylation acts as a regulatory layer in bacteria and archaea, shaping diverse biological traits and behaviours.
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Hermoine Venter @hjvsci.bsky.social · 13/04/2026
You need a name to yell at instruments when they misbehave! And also to tell them when they have done a good job of course 😅🔬
nature.com
An instrument named Cannoli - Nature Methods
Plenty of scientists give their instruments nicknames, chosen with affection and for good reasons.
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 07/04/2026
Nucleoid-associated proteins sense phage-induced genome damage to elicit abortive infection www.biorxiv.org/content/10.64898/20…
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Sorek Lab @soreklab.bsky.social · 07/04/2026
Our current understanding of the Metis defense system - carved in wood By @naamalila.bsky.social www.biorxiv.org/content/10.1...
Would carving of the mechanism of Metis antiphage defense
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Jay Hinton @jayhinton.bsky.social · 08/03/2026
🦠 “𝗧𝗵𝗲 𝘃𝗶𝗿𝘂𝘀𝗲𝘀 𝘁𝗵𝗮𝘁 𝗲𝗮𝘁 𝗯𝗮𝗰𝘁𝗲𝗿𝗶𝗮 𝗰𝗼𝘂𝗹𝗱 𝘀𝗮𝘃𝗲 𝘂𝘀 — 𝗯𝘂𝘁 𝗵𝗼𝘄?” Historian @kirchhelle.bsky.social chats with 𝗠𝗮𝗿𝘁𝗵𝗮 𝗖𝗹𝗼𝗸𝗶𝗲 & 𝗝𝗮𝗺𝗲𝘀 𝗘𝗯𝗱𝗲𝗻 about revival of phage biology & phage therapy as antibiotics fail. 🎧 2024 BBC Radio 4 — listen worldwide: www.bbc.co.uk/sounds/play/... #phage #phagesky #microsky
bbc.co.uk
In Our Time - Bacteriophages - BBC Sounds
Melvyn Bragg and guests discuss how viruses can help us track and cure bacterial illnesses
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James McInerney @jomcinerney.bsky.social · 05/03/2026
True story.
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Hermoine Venter @hjvsci.bsky.social · 02/03/2026
Today is my first day joining @ellinoralseth.bsky.social in the Alseth lab! Excited to get started working with Acinetobacter baumanii and its phage Mystique🦠🧪🤓 #PhageSky
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Osterman Ilya @ostermanilya.bsky.social · 19/02/2026
Very timely review; thank Alex Hong and @jbdsf.bsky.social for putting this together journals.plos.org/plospathogen...
journals.plos.org
It’s not me, it’s you: Anti-phage nuclease specificity inside a bacterium
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Vivek Mutalik @vivekmutalik.bsky.social · 18/02/2026
📣new preprint from the phagefoundry.org team 🎉 Jessica Trinh and Catherine Mageeney (Sandia National Laboratories)!! Systematic analysis of prophages from ~1000 Acinetobacter baumannii isolates, induction & screening. We found this 😎 looking phage with bunch of 💍💍
Bacterial viruses image
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John Lees @johnlees.bacpop.org · 09/02/2026
How do bacterial pangenomes evolve, what controls their dynamics, why do they exist? Fitting a mechanistic model to 450 species from allthebacteria.org suggesting fast vs slow gene exchange (i.e. amount of MGEs) is a major differentiating factor, correlated with phylogeny rather than lifestyle
Proportion of fast genes, as a trait mapped on the bacteria-wide phylogeny
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Kranzusch Lab @kranzuschlab.bsky.social · 06/02/2026
Aude Bernheim @audeber.bsky.social and Eugene Koonin discuss one of most interesting questions in the field connecting bacterial and animal immunity! www.nature.com/articles/s41...
nature.com
The paradox of immune systems conservation between prokaryotes and eukaryotes - Nature Reviews Microbiology
The widespread prokaryotic immune systems, in particular restriction–modification, CRISPR–Cas and defensive toxin–antitoxin systems, are absent in eukaryotes, whereas relatively rare ones, such as Arg...
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Hermoine Venter @hjvsci.bsky.social · 04/02/2026
After many challenges along the way, I am happy to say our work on evading RM systems to transform Staphylococcus haemolyticus is now out as a preprint! 🦠 www.biorxiv.org/content/10.6... #microsky
biorxiv.org
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Willem van Schaik @wvschaik.bsky.social · 11/11/2025
Heroic work by @bluebirdsjunk.bsky.social in pulling this mammoth study together 'Staphylococcus haemolyticus Population Genomics Provides Insights into Pathogenicity and Commensalism' www.biorxiv.org/content/10.1...
biorxiv.org
Staphylococcus haemolyticus Population Genomics Provides Insights into Pathogenicity and Commensalism
Staphylococcus haemolyticus is a common commensal bacterium but also an opportunistic pathogen, frequently implicated in bacteraemia and sepsis in preterm neonates and immunocompromised patients. Desp...
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Nature Microbiology @natmicrobiol.nature.com · 07/11/2025
Out now! An updated evolutionary classification of CRISPR–Cas systems including rare variants #microsky www.nature.com/articles/s41...
nature.com
An updated evolutionary classification of CRISPR–Cas systems including rare variants - Nature Microbiology
An exploration of previously undescribed variants from the long tail of the CRISPR–Cas distribution.
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Feldman Lab@WashU @feldmanlab.bsky.social · 29/09/2025
I said I will never work on phages, but having @micheleleroux.bsky.social next door made me change my mind. Here is Alexis's new paper showing how different phages deal with the capsular barrier to infect Acinetobacter! A great collaboration between our labs! journals.plos.org/plospathogen...
journals.plos.org
Acinetobacter phages use distinct strategies to breach the capsule barrier
Author summary Acinetobacter baumannii causes life-threatening and often antibiotic-resistant infections thereby posing a global threat. Accordingly, there is an urgent need for alternative treatments...
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Martial Marbouty @mmarbout.bsky.social · 19/09/2025
You like phages ? In this publication, we use metaHiC and our new version of the MetaTOR pipeline to challenge the traditional view of phages with a narrow host range. @rkoszul.bsky.social @natmicrobiol.nature.com @cnrs.fr @institutpasteur.bsky.social www.nature.com/articles/s41...
nature.com
Phages with a broad host range are common across ecosystems - Nature Microbiology
Proximity-ligation-based sequencing from 111 samples and 5 environments reveals that a substantial proportion of phages infect multiple species.
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Brian D. Wade @astrobrian.bsky.social · 21/07/2025
Experimental evolution in an era of molecular manipulation #ExperimentalEvolution #evolution #evoSky www.nature.com/articles/s41...
nature.com
Experimental evolution in an era of molecular manipulation - Nature Reviews Genetics
In this Review, Ascensao and Desai discuss how methodological advances in genotype and phenotype manipulation are transforming experimental evolution approaches and providing new insights into the und...
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David Sancho @sancholab.bsky.social · 16/07/2025
💥 A gut microbe metabolite that drives #atherosclerosis? Yes—Imidazole propionate (ImP) triggers vascular inflammation without changing cholesterol. 🧪 We show the pathway—and how to block it. nature.com/articles/s41... #OpenAccess at @Nature @CNIC_CARDIO #CVD #immunosky #cardiosky #microbiomesky
nature.com
Imidazole propionate is a driver and therapeutic target in atherosclerosis - Nature
Imidazole propionate produced by gut microbiota is associated with atherosclerosis in mouse models and in humans, and causes the development of atherosclerosis through activation of the imidazoline-1 ...
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Hermoine Venter @hjvsci.bsky.social · 12/04/2025
Finally made the jump to @bsky.app! Hello World!🤓 Have a close-up of Staphylococcus haemolyticus to celebrate 🥳🔬
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