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Altegoerlab

@faltegoer.bsky.social
173 followers 254 following 11 posts

PI at Düsseldorf University| Exploring Fungal Communication with a focus on GPCRs | Passionate about Structural Biology | altegoerlab.de

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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 14/10/2026
LoL-align is out in @natmethods.nature.com! It aligns protein structures without superposition. More sensitive than TM-align and DALI, producing better alignments 5–20× faster. Now available in Foldseek! 📄 www.nature.com/articles/s41... 💾 github.com/steineggerlab/foldseek 🌐 search.foldseek.com
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Max Planck Institute of Biochemistry @mpibiochem.bsky.social · 14/10/2026
How do cells make sure membrane proteins end up in the right place, and fix it when they don’t? A new piece of the puzzle now published in natsmb.nature.com. Study by the Schulman Dept. mpibiochem.bsky.social & Feige Lab tum.de, with the Schuldiner weizmann.ac.il & Fenech Labs unicologne.bsky.social
doi.org
Structural basis of an endoplasmic reticulum EMC:Spf1 insertase–dislocase complex - Nature Structural & Molecular Biology
Klose et al. provide structural insights into a supercomplex between the EMC and Spf1 that brings together cellular machines for membrane protein insertion and extraction into a single entity, providi...
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Altegoerlab @faltegoer.bsky.social · 13/10/2026
Thanks Alexej! A few discussions over coffee were needed for this one ;-)
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Altegoerlab @faltegoer.bsky.social · 13/10/2026
Very happy that this story is finally out! Fantastic work by Gabriel & team and only possible with great support from @kaiheimel.bsky.social @oamiranda.bsky.social & @billerbecks.bsky.social Learn more here 👇🏻
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Eva Nowack @evanowack.bsky.social · 12/10/2026
🔬Postdoc position available! Interested in uncovering the molecular mechanisms underlying host-endosymbiont interactions? Join our group and help us explore these fascinating biological partnerships! Deadline: 29. Oct Details & application: karriere.hhu.de/index.php?ac... Please spread the word!
karriere.hhu.de
Postdoc (m/f/d) in Endosymbiosis Research
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Gema Puebla @gemapuebla.bsky.social · 06/10/2026
Starting my bluesky with this super exciting new! New preprint from Di Pietro's Lab www.biorxiv.org/content/10.6... How do fungal pathogens maintain dispensable chromosomes without losing them in clonal evolution? Here's a thread 🧵
biorxiv.org
Killer meiotic driver prevents chromosome loss and enhances fitness in a fungal pathogen
Fungal pathogens often carry dispensable chromosomes (DCs) that confer a selective advantage in adverse environments or during host infection but can be spontaneously lost under non-selective conditio...
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Daumann Lab @daumannl.bsky.social · 06/10/2026
www.nature.com/articles/s41... nice paper from Carl-Eric Wegner @hhu.de 🧪
nature.com
High diversity but limited expression of biosynthetic gene clusters in a peatland microbial community - Nature Communications
Secondary metabolites, including metal chelators and antibiotics, are synthesized by diverse biosynthetic pathways. Here authors find that peatlands harbour extensive biosynthetic novelty, but their a...
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Gulnara Tagirdzhanova @metalichen.bsky.social · 01/10/2026
Our review on #lichen research in the #omics era is out in @lichenologist.bsky.social! We discuss omics-driven progress and outline several areas and methods that we think especially promising for lichen biology, such as single-cell omics and epigenomics 🖥️ 🧪 🦠 🧫 #SymbioSky doi.org/10.1017/S002...
The infographic is divided into three columns.

Column 1: Sample Types.

At the top is a photo of a yellow Lichen Thallus. An arrow points down to a cross-section diagram showing green algal cells embedded in white fungal hyphae. Below this is Isolate Cultures, showing a petri dish and a test tube containing green liquid.

Column 2: Omics.

- Genomics: Assembly of D N A sequences into complete genomes, illustrated by blue horizontal bars and a double helix icon.

- Transcriptomics: Quantifying expression of genes, shown as small green segments aligning to a dark blue reference genome.

- Metabolomics: Analysis of metabolites, represented by a chemical molecular structure.

- Proteomics: Characterization of proteins, shown as a blue 3 D protein folding model.

- Epigenomics: Exploration of genome modifications, illustrated by blue circles representing histones wrapped in D N A with hexagonal tags.

Column 3: Advances and Opportunities.

- Evolution of lichenization: A phylogenetic tree paired with a horizontal bar chart.

- Gene regulation: A line graph showing chromatin accessibility and a heatmap for motif enrichment analysis. Below is a D N A sequence motif: C G C G A A A A A A.

- Symbiont interaction: A diagram comparing a bulk sample to isolated nuclei using single-cell transcriptomics, visualized with a stacked bar chart showing different cell population proportions.
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Philipp Radler @radler92.bsky.social · 01/10/2026
The first paper of my PostDoc in Christa Schlepers group (@archaea-vienna.bsky.social) on the dynamics of Asgard archaea is now out in Nature! www.nature.com/articles/s41... This was a great team effort and I am looking forward to uncover the complex behavior of these cells further!
nature.com
Dynamic protrusions mediate crawling motility in Asgard archaea - Nature
Anoxic live-cell imaging shows actin-dependent crawling motility and dynamic protrusions in Asgard archaea, providing insights into cellular innovations that may have contributed to eukaryotic evoluti...
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Julia Frunzke @frunzkelab.bsky.social · 01/10/2026
Thank you MibiNet & friends @mibinet.bsky.social for a wonderful International Symposium on "Microbial Networking - from organelles to cross-kingdom communities"!! It was impressive to see the vivid exchange, excellent talks and and poster discussions. @dfg.de; @hhu.de; @fz-juelich.de
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Nathan Chrismas @thevagrantlichenologist.com · 28/09/2026
Our new short comm introducing Ochrolechia frigida as a system for studying lichen symbiont dynamics is online now in The Lichenologist @lichenologist.bsky.social www.cambridge.org/core/journal...
cambridge.org
Thallus growth stage affects community-wide capacity for carbon metabolism in the alpine heath lichen Ochrolechia frigida | The Lichenologist | Cambridge Core
Thallus growth stage affects community-wide capacity for carbon metabolism in the alpine heath lichen Ochrolechia frigida
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Lawrence Rudy Cadena @rudycadenabioevo.bsky.social · 27/09/2026
Our paper on the subcellular proteome of Paulinella is finally out! A possible oxygen-scavenging mechanism to enhance RuBisCO carboxylation highlights how protists can reveal unexpected solutions to challenges in photosynthesis. Big kudos to everyone involved! @evanowack.bsky.social
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Boris Sieber @borissieber.bsky.social · 12/05/2026
Very excited that our discovery of Sms1 as the #MAPK #scaffold of fission yeast mating has just been published in @natcomms.nature.com! @biology-unige.bsky.social www.nature.com/articles/s41...
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Rasmus Jensen @rasmusjensen.bsky.social · 25/09/2026
🎉 Out today in Cell: the paper I've been looking forward to sharing for a long time 🎉 We used cryo-ET to find a molecular machine nobody knew existed on the surface of a minimal bacterium, and worked out what it does. 🧵(1/7) #TeamTomo #cryoET
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Josie Maidment @jmaidment.bsky.social · 25/09/2026
Happy to share that our study of the interaction between the MAX effector AVR-Pia and rice HMA domain-containing proteins has been published (as the cover article!) in PLOS Pathogens. journals.plos.org/plospathogen...
journals.plos.org
Two folds, many faces: The Magnaporthe oryzae MAX effector AVR-Pia targets novel rice HMA domain-containing proteins
Author summary Blast, caused by the fungal pathogen Magnaporthe oryzae, is one of the world’s most devastating rice diseases. During infection, M. oryzae secretes a diverse set of molecules, known as ...
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Andrew Urquhart @starships-andrew.bsky.social · 24/09/2026
Another step in the #Starship story - they move via a circular intermediate. Helps explain how these elements horizontally transfer and means that we can modify them into transformation vectors (starmids). www.biorxiv.org/content/10.6...
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 24/09/2026
AlphaFold Database is expanding into pandemic preparedness. Together with NVIDIA, DeepMind, EBI et al. we exhaustively predicted ~1.7 million homo- & heterodimers across 2,812 viral proteomes, resulting in 8,028 high-confidence predictions. 📄 research.nvidia.com/labs/dbr/ass... 🌐 alphafold.ebi.ac.uk
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ERGA - European Reference Genome Atlas @ergabiodiv.bsky.social · 23/09/2026
🗓️ Save the date! Next Wednesday at 16:00 CEST, the ERGA BioGenome Analysis & Applications Seminars are back with a talk on Starship transposons and their implications for fungal evolution 🍄 Speakers: @mycomile.bsky.social & @fungage-lab.bsky.social 🔗 www.erga-biodiversity.eu/post/starshi...
erga-biodiversity.eu
Starship transposons and a new framework to understand fungal evolution
This month's ERGA BioGenome Analysis & Applications Seminar will feature talks by Emile Gluck-Thaler and Aaron Vogan on the recently discovered Starship giant transposons and their implications for…
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Martin Pacesa @martinpacesa.bsky.social · 21/09/2026
ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi...
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Julia Frunzke @frunzkelab.bsky.social · 19/09/2026
Proudly present our fantastic collaborative effort within SFB 1535 "Microbial networking" @mibinet.bsky.social now out in The ISME Journal. "Context-dependent siderophore exploitability shapes microbial community structure" academic.oup.com/ismej/advanc... @hhu.de @fz-juelich.de @dfg.de
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Robert Arkowitz @robertarkowitz.bsky.social · 19/09/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Cellular integration of surface and nutrient signals during the early stage of filamentous growth in Saccharomyces cerevisiae
Budding yeast cells can transition from vegetative to filamentous growth under specific environmental stimuli. Saccharomyces cerevisiae has served as a model to understand this process, which is linke...
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 19/09/2026
BFVD v3 contains 5.8M viral protein structures, 16× more than v2; 75% high quality, filling a major gap in AFDB coverage. It fully covers 72.6% of reference proteomes and spans 72.7% of ICTV species. Great work by @eunbelivable.bsky.social et al. 📄 www.biorxiv.org/content/10.6... 🌐 bfvd.foldseek.com
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Ákos T Kovács @evolvedbiofilm.bsky.social · 17/09/2026
#InternationalMicroorganismDay is a great time to share a work just published in ISME Journal; a massive collaborative network at Forschungszentrum Jülich and Heinrich Heine University Düsseldorf by @frunzkelab.bsky.social and colleagues #Community & #siderophores academic.oup.com/ismej/advanc...
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Daumann Lab @daumannl.bsky.social · 17/09/2026
Come be our colleague at @hhu.de @chemiehhu.bsky.social ! We are currently looking for 2 Full Professors in Physical chemistry in our department! berufungsportal.hhu.de/VAADIN/dynam... berufungsportal.hhu.de/VAADIN/dynam... #chemsky #chemchat 🧪
berufungsportal.hhu.de
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Ákos T Kovács @evolvedbiofilm.bsky.social · 17/09/2026
Poster prizes at #EMBOBacNet congratulations to all! 👏 More than 100 posters with exciting research!
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Milot Mirdita @milot.bsky.social · 16/09/2026
ColabFold 1.6.3 is out! 2.5x faster, pip-installable, ipSAE+pDockQ2 scores. Thanks Choonghwan Lee, Marielle Russo, Gyuri Kim 🐍pip install colabfold[alphafold] CF2 Sneak Peak with AF3/Boltz/Protenix/ESMFold2… 🐍pip install "colabfold[alphafold3]@git+https://github.com/sokrypton/ColabFold@af3-preview"
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Robert Arkowitz @robertarkowitz.bsky.social · 15/09/2026
www.nature.com/articles/s41...
nature.com
Cryo-EM structures of Candida albicans chitin synthase Chs1 reveal a druggable translocation channel - Nature Microbiology
Structures of Candida albicans class II chitin synthase reveal mechanisms of oligosaccharide translocation and inhibition. The translocation channel is a class II-specific druggable site, and its inhi...
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UK Centre for Ecology & Hydrology (UKCEH) @ukceh.bsky.social · 15/09/2026
🍄‍🟫💻 Explore UKCEH’s new Fungi Explorer, an interactive tool revealing the hidden world of soil fungi across Great Britain using DNA data from 1,000+ Countryside Survey soil samples. Search species, map distributions, or match your own DNA sequences. connect-apps.ceh.ac.uk/fungal-explo…
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Camilla Molinari @camilla-moli.bsky.social · 14/09/2026
Excited to share this pre-print from my PhD work! We explore a Pmk1-Mst12-Bip1 network required for appressorium-mediated infection by the blast fungus 🌾 www.biorxiv.org/content/10.6... Thread 👇
biorxiv.org
A Pmk1-Regulated Mst12-Bip1 Network Coordinates Appressorium Function, Effector Deployment, and Invasive Growth by Magnaporthe oryzae
To cause rice blast disease, the filamentous fungus Magnaporthe oryzae develops a specialised infection cell called an appressorium, which generates enormous turgor to breach the rice leaf cuticle. Al...
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Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
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Nick Talbot @talbotlabtsl.bsky.social · 14/09/2026
Latest preprint from our group. We found the Bip1 transcription factor is phosphorylated in a Pmk1-dependent manner & with Mst12 co-regulates appressorium-specific functions, as well as acting on genes associated with invasive growth. @camilla-moli.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
A Pmk1-Regulated Mst12-Bip1 Network Coordinates Appressorium Function, Effector Deployment, and Invasive Growth by Magnaporthe oryzae
To cause rice blast disease, the filamentous fungus Magnaporthe oryzae develops a specialised infection cell called an appressorium, which generates enormous turgor to breach the rice leaf cuticle. Al...
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 13/09/2026
Fold Spacer lets you fly through protein structures (Weekend project #2). It’s my first game: I originally set out to build a racer with structures as the tracks, but was a little too crazy. So it became this instead. You can upload your own structures. 🌐 martin-steinegger.github.io/Fold-Spacer/
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Magnus Kjærgaard @proteinmagnus.bsky.social · 13/09/2026
How does linear motifs drive dephosphorylation - and does it matter where and how strong the motifs are? These are the question Evi answers in her brand new pre-print: www.biorxiv.org/content/10.6...
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Hauke Hillen @haukehillen.bsky.social · 11/09/2026
Happy to share our new preprint on the structure of the human mitochondrial RNA degradosome, a central player in organellar RNA metabolism! Work led by graduate student @paulafprado.bsky.social in our group. www.biorxiv.org/content/10.6... 🧵 1/9
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Team Thomma @teamthomma.bsky.social · 08/09/2026
📣...and now for something completely different: no plant pathogens, no Verticillium, but lichens! Driven by our lichen king🤴@ciarankelly.bsky.social with help of a.o. @hroevenich.bsky.social @usadellab.bsky.social @vivienrosenthal.bsky.social Watch for more in future! www.biorxiv.org/content/10.6...
biorxiv.org
Decoupled evolution of antimicrobial repertoires in lichen-forming fungi
Lichens are stable multipartite symbioses in which a fungal mycobiont associates with one or more photosynthetic partners while hosting complex microbiomes. Secreted antimicrobial proteins (AMPs) have...
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Ciaran Kelly @ciarankelly.bsky.social · 08/09/2026
Our new preprint is out! 🍄 Decoupled evolution of antimicrobial repertoires in lichen-forming fungi We compared many lichen-forming fungal genomes to ask how different photobiont associations relate to their antimicrobial repertoires.
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Khaled_Selim Lab @selimlab.bsky.social · 07/09/2026
A new preprint from the lab! 📄 We solved a long-standing question: how mechanistically the PTM AMPylation of glutamine synthetase controls the activity of one of the most important enzymes on Earth. 🌎 w/ beautiful cryoEM structures @hhu.de & @sfb1381.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
Metabolic regulation and structural mechanism of glutamine synthetase AMPylation
In bacteria, glutamine synthetase (GS) is the main ammonium assimilation enzyme. Its activity is tightly regulated according to cellular energy status and carbon/nitrogen balance through reversible AM...
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Magnus Bauer @kinasekid.bsky.social · 06/09/2026
AlphaFold Server’s ligand menu just got a lot bigger and I almost missed it! You can now add any ligand from the wwPDB Chemical Component Dictionary. Just enter its CCD code 🥳
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Daniel Croll @danielcroll.bsky.social · 04/09/2026
Our lab is looking for PhD students to join us in 2027 🎓🎉 The projects can be structured around our research directions: - Transposable element dynamics - Fungal pangenomics - ML/language model genomics applications - Pathogen adaptation More here pathogen-genomics.org ("Jobs") and please share! 🙏
pathogen-genomics.org
Evolutionary genomics of pathogens
Croll lab at University of Neuchatel. The lab of Daniel Croll wants to understand how pathogens evolve to cause disease. For this, we mainly focus on major crop pathogens to unravel mechanisms of rapi...
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Altegoerlab @faltegoer.bsky.social · 03/09/2026
Very nice! Congrats!
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Altegoerlab @faltegoer.bsky.social · 03/09/2026
Super cool! Congrats!
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Nationale Akademie der Wissenschaften Leopoldina @leopoldina.org · 03/09/2026
🦠 Die Leopoldina ehrt Mikrobiologin Regine Kahmann für ihr Lebenswerk mit der Cothenius-Medaille. Herzlichen Glückwunsch! ✨
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Michael Feldbrügge @mfeldbruegge.bsky.social · 02/09/2026
Two PhD positions in the Feldbrügge Lab at HHU Düsseldorf within nEXt-RNA: 🔬 DC1: Live-cell imaging of RNA transfer and function 📦 DC10: Mechanisms and applications of RNA delivery RNA biology, fungi, extracellular vesicles and advanced imaging. www.mikrobiologie.hhu.de/en/
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Cecile Lorrain @ccilelorrain.bsky.social · 31/08/2026
Now accepted: Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina academic.oup.com/g3journal/ar...
academic.oup.com
Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina
Abstract. Dikaryotic rust fungi maintain two distinct haploid nuclei for most of their life cycle, making their large, repeat-rich genomes difficult to ass
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Ákos T Kovács @evolvedbiofilm.bsky.social · 30/08/2026
A phage communication peptide alters Bacillus subtilis colony development and promotes sporulation bioRxiv from @michaelmeijler.bsky.social with @avigdoreldar.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
A phage communication peptide alters Bacillus subtilis colony development and promotes sporulation
Temperate Bacillus phages use arbitrium peptides to coordinate lysis–lysogeny decisions, but whether the mature communication peptide can be sensed directly by Bacillus subtilis and affect its physiol...
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PLOS Biology @plosbiology.org · 27/08/2026
Giant viruses are known across eukaryotes. This study by @hyphaltip.bsky.social &co identifies Mycodnaviridae, a global giant #virus family that persistently infect zoosporic #fungi, providing a promising model for studying #giantVirus infection in eukaryotes. 🧪 #AcademicSky plos.io/3Sq4ioL
Allomyces javanicus California 12
Sexual structures of the fungus Allomyces javanicus California 12, which is persistently infected with a giant virus. Image credit Timothy James.

I confirm that the images provided can publish under the Creative Commons Attribution
License.
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 26/08/2026
Foldseek-Interface enables fast search/clustering of the protein interface universe! We clustered 3.1M PDB dimers into 77,167 groups and found new interfaces keep appearing even as fold discovery plateaus. 🧵 📄 www.biorxiv.org/content/10.6... 🔎 search.foldseek.com/interface 🌐 interface.foldseek.com
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Robert Arkowitz @robertarkowitz.bsky.social · 26/08/2026
www.nature.com/articles/s41...
nature.com
The proportional scaling of mRNA and ribosome concentrations controls eukaryotic cell growth - Nature Cell Biology
Gao et al. show that yeast grow faster by proportionally increasing mRNA and ribosome concentrations to increase actively translating ribosomes, while elongation remains constant. A mass-action model ...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 26/08/2026
Metabolic Modelling Facilitates the Design of Synthetic Communities by Simplifying Natural Microbial Communities in Environmental Microbiology enviromicro-journals.onlinelibrary.wiley.com/doi/full/10....
enviromicro-journals.onlinelibrary.wiley.com
Metabolic Modelling Facilitates the Design of Synthetic Communities by Simplifying Natural Microbial Communities
A simulation-based approach was developed to design synthetic microbial communities (SynComs) by simplifying complex microbial communities through metabolic modelling. The simulation-based approach w...
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