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erzbergerlab.bsky.social

@erzbergerlab.bsky.social
1.4K followers 2.8K following 81 posts

Studying ribosomes at UT Southwestern

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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 9h
And a great News and Views from Michael Prattes and Helmut Berger.
nature.com
Targeting ribosome biogenesis - Nature Chemical Biology
New work reveals a small-molecule inhibitor of the human ribosome biogenesis AAA-ATPase NVL that shows high selectivity and anti-proliferative activity. This holds promises for the development of bett...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 9h
New paper from the lab. A fantastic collaboration with the Nijhawan and DeBrabander labs led by Holly Guo, Ye Tao and Victor Cruz.
nature.com
A selective NVL inhibitor suppresses tumor growth by targeting ribosome biogenesis - Nature Chemical Biology
Guo, Tao and Cruz et al. identified a selective inhibitor named MM17 of nuclear valosin-containing protein-like (NVL), an AAA+ ATPase responsible for assembly of large ribosome subunit (60S). A bioava...
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Reposted by @erzbergerlab.bsky.social
Green Lab JHMI @greenlab.bsky.social · 09/10/2026
U should check DIS out! In our new paper (and sequel to our RIOK3 story), we find that rRNA oligo(U) tailing and DIS3L2-mediated decay drive 40S ribosome degradation 💫 www.cell.com/molecular-ce...
cell.com
Oligo(uridine) tailing and exonucleolytic decay drive 40S ribosome degradation in response to stress
40S ribosomes are degraded in diverse stress conditions. Diehl et al. find that in response to stress, TUT7 is recruited to ubiquitylated 40S ribosomes and adds 3′ oligo(U) tails to the 18S rRNA. Iter...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 09/10/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Molecular Architecture of the Human GCN1–ABCF3 Ribosome Collision Sensor
The Integrated Stress Response is a critical eukaryotic signaling pathway that maintains cellular proteostasis. During amino acid scarcity, the yeast kinase Gcn2 (GCN2 in humans) and its activators Gc...
061
erzbergerlab.bsky.social @erzbergerlab.bsky.social · 08/10/2026
Ribosome remodeling drives translation adaptation during viral infection and cellular stress: Molecular Cell www.cell.com/molecular-ce...
cell.com
Ribosome remodeling drives translation adaptation during viral infection and cellular stress
Tsai et al. discover that ribosome composition is reprogrammed in response to intrinsic and external cellular perturbations, which supports ribosome remodeling as a conserved mechanism that enables ad...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 03/10/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Pseudouridylation landscape across 42 nuclear-encoded S. cerevisiae tRNAs
Pseudouridine is the most abundant RNA base modification due to its prevalence in tRNA and rRNA, where it serves as a key modulator of structure and function. Yet, in the widely used model organism, t...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 03/10/2026
doi.org/10.1038/s415...
doi.org
Control of ice thickness in cryo-EM via confinement - Nature Methods
This study explores the use of graphene reservoirs formed over perforated supporting films as a method to precisely control ice thickness during cryo-EM sample preparation.
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Reposted by @erzbergerlab.bsky.social
Diorge Souza @diorgeps.bsky.social · 02/10/2026
Finally out! Our work uncovers evolutionary links between bacterial and archaeal ribosome hibernation and eukaryotic energy sensing, through the archaeal hibernation factor AHA link.springer.com/article/10.1...
link.springer.com
A conserved archaeal protein with evolutionary links to bacterial ribosome hibernation and eukaryotic energy sensing - The EMBO Journal
Ribosome hibernation helps cells survive stress by reversibly silencing translation and preserving ribosomal complexes. Although well characterized in bacteria and eukaryotes, archaeal hibernation rem...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 29/09/2026
doi.org/10.1038/s415...
doi.org
Automated prototyping of genetic codes - Nature
A robotic, cell–free platform rapidly prototypes redesigned genetic codes, enabling the translation of proteins with reassigned codons and non-standard amino acids without altering living genomes.
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 28/09/2026
www.nature.com/articles/s41...
nature.com
Cotranslational membrane protein biogenesis by an EMC-bound translocon - Nature Structural & Molecular Biology
The authors use selective ribosome profiling, cryo-ET and site-specific photocrosslinking to show how the ER membrane protein complex (EMC) cooperates with ribosome-bound translocons to facilitate mul...
073
Reposted by @erzbergerlab.bsky.social
joe dobbs @joedobbs.bsky.social · 25/09/2026
Our work investigating the cooperation between gene expression machines is now online @cellpress.bsky.social. Check it out if you're interested in high-throughput #cryoET, transcription and translation, or using structural biology to quantify gene expression in cells! 🔬 www.cell.com/cell/fulltex...
cell.com
Single-cell visual proteomics of a minimal bacterium reveals structural coordination of gene expression machineries
Cryo-electron tomography (cryo-ET) resolves and quantifies an almost complete view of bacterial translation, revealing how gene expression machineries coordinate across the processes of transcription,...
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Reposted by @erzbergerlab.bsky.social
Rasmus Jensen @rasmusjensen.bsky.social · 25/09/2026
🎉 Out today in Cell: the paper I've been looking forward to sharing for a long time 🎉 We used cryo-ET to find a molecular machine nobody knew existed on the surface of a minimal bacterium, and worked out what it does. 🧵(1/7) #TeamTomo #cryoET
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 25/09/2026
In-cell structures visualize human pre-ribosome assembly in the nucleolus | Science www.science.org/doi/10.1126/...
science.org
In-cell structures visualize human pre-ribosome assembly in the nucleolus
In eukaryotes, ribosome biogenesis initiates within the nucleolus, a hallmark multilayered compartment of the nucleus. Structures of pre-ribosomes have been characterized ex situ, but their assembly p...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 25/09/2026
Structural mechanisms of SAMD9 autoinhibition and pathogenic dysregulation | Science Advances www.science.org/doi/10.1126/...
science.org
Structural mechanisms of SAMD9 autoinhibition and pathogenic dysregulation
SAMD9 and SAMD9L (SAMD9/9L) are large cytosolic proteins essential for hematopoietic homeostasis and antiviral defense (1–3). Germline gain-of-function (GoF) mutations in SAMD9/9L cause severe multisy...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 24/09/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Molecular Architecture of the Human GCN1–ABCF3 Ribosome Collision Sensor
The Integrated Stress Response is a critical eukaryotic signaling pathway that maintains cellular proteostasis. During amino acid scarcity, the yeast kinase Gcn2 (GCN2 in humans) and its activators Gc...
042
Reposted by @erzbergerlab.bsky.social
Maria Hondele @mariahondele.bsky.social · 18/09/2026
The heatwave is finally over - just in time for our “Frosty Foci” to finally come online! ❄️🦠 We found that E. coli builds a transient nucleolus-like ribosome biogenesis compartment during cold adaptation, when RNA (mis)folding makes ribosome biogenesis challenging.
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 18/09/2026
www.science.org/doi/10.1126/...
science.org
A noncontiguous code for RNA-guided DNA recognition at the origin of CRISPR-Cas
CRISPR-Cas provides RNA-mediated adaptive immunity, but how its first RNA-guided effector arose is unclear. In this study, we report the discovery of Viral Interference Programmable Repeat (VIPR) syst...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 18/09/2026
VIPR RNA-guided DNA recognition by noncontiguous geometric triplex formation | Science www.science.org/doi/10.1126/...
science.org
VIPR RNA-guided DNA recognition by noncontiguous geometric triplex formation
Viral interference programmable repeat (VIPR) systems use a noncontiguous code for RNA-guided transcriptional silencing. How the Vipr protein and a VIPR RNA (vrRNA) comprising alternating GGY and NN s...
041
erzbergerlab.bsky.social @erzbergerlab.bsky.social · 17/09/2026
doi.org/10.1083/jcb....
doi.org
Nucleolar dynamics are determined by the ordered assembly of the ribosome
Sheu-Gruttadauria et al. show that the material properties of the nucleolus are shaped by the assembly state of ribosomal precursors, which tune nucleolar
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 11/09/2026
Integrated stress response inhibition decouples cardiotoxicity from anthracycline chemotherapy while enhancing antitumor efficacy: Cell Reports www.cell.com/cell-reports...
cell.com
Integrated stress response inhibition decouples cardiotoxicity from anthracycline chemotherapy while enhancing antitumor efficacy
The clinical utility of doxorubicin is limited by dose-dependent cardiotoxicity. Yang et al. identify an integrated stress response (ISR)-driven ATF4-METTL1-NLRP3 axis underlying this injury. ISRIB tr...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 11/09/2026
doi.org/10.1126/scie...
doi.org
Manipulation of protein translation and stem cell self-renewal by CRISPR activation of rRNA transcription
Ribosomal RNA (rRNA) transcription rates vary during development, and their dysregulation is linked to diseases such as cancer and ribosomopathies. Owing to their high abundance and genomic redundancy...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 04/09/2026
www.nature.com/articles/s41...
nature.com
Rewiring the ribosome to translate proteins encoded in its own RNA - Nature
Bacterial ribosomes can synthesize proteins encoded within their own RNA.
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 04/09/2026
www.biorxiv.org/content/10.6...
biorxiv.org
CryoGO enables high-resolution structural profiling of endogenous cellular macromolecules
Resolving macromolecular structures within their native cellular environment is essential for connecting molecular architecture to physiological function, yet the field lacks accessible, high-throughp...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 04/09/2026
www.biorxiv.org/content/10.6...
biorxiv.org
A codon-sensitive conformational switch gates commitment to translation start sites
Human translation initiation requires single-nucleotide precision to establish the reading frame, yet initiation at non-AUG codons plays key roles in gene expression. How the initiation machinery bala...
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Reposted by @erzbergerlab.bsky.social
Alexey Amunts @amunts.bsky.social · 31/08/2026
A sad day. Ada's pioneering work on the ribosome changed how we understand one of the central machines of life. She is a remarkable example of curiosity and boldness in pursuing questions that seemed impossible. Her scientific courage and persistence has been an inspiration.
wis-wander.weizmann.ac.il
Prof. Ada Yonath, Nobel Laureate and a Model of Scientific Perseverance, Has Passed Away - Weizmann Wonder Wander - News, Features and Discoveries
From pursuing an impossible dream to uncovering one of the cell’s best-kept secrets and advancing the design of improved antibiotics
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Green Lab JHMI @greenlab.bsky.social · 28/08/2026
Pre-print alert! SERBP1 regulates the interactions between ribosomes and different proteins. We find that it prevents interactions between ribosomes and RNF10/RIOK3 to protect ribosomes from selective 40S degradation. Congrats! @nicollearosa.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
SERBP1 is a master regulator of ribosome interactions
Ribosome function depends on interactions with diverse proteins whose activities determine translational efficiency, impose quality control and activate signaling pathways. These many competing activi...
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Reposted by @erzbergerlab.bsky.social
Evelina Tutucci @anilevetu.bsky.social · 27/08/2026
The proportional scaling of mRNA and ribosome concentrations controls eukaryotic cell growth. From Jan Skotheim's team www.nature.com/articles/s41...
nature.com
The proportional scaling of mRNA and ribosome concentrations controls eukaryotic cell growth - Nature Cell Biology
Gao et al. show that yeast grow faster by proportionally increasing mRNA and ribosome concentrations to increase actively translating ribosomes, while elongation remains constant. A mass-action model ...
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Reposted by @erzbergerlab.bsky.social
Jamie Cate @jhdcate.bsky.social · 27/08/2026
Ribosomes have a strange protein modification in a universally-conserved protein uS11. This modification, isoaspartate, is also conserved in nearly all forms of life. We originally found this modification using cryo-EM, but had no idea how it was formed. 1/ elifesciences.org/articles/60482
elifesciences.org
Structure of the bacterial ribosome at 2 Å resolution
High-resolution maps and models of the bacterial ribosome provide new chemical insights into protein synthesis, and should enable the development of robust tools for cryo-EM structure modeling and ref...
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Reposted by @erzbergerlab.bsky.social
Evdokiia Potolitsyna @evdokiiap.bsky.social · 26/08/2026
1/ Do cells use phase separation to adapt biosynthetic output to changing demands? In our new preprint, we show that under nutrient limitation, the nucleolus enters a reversible ‘hibernation’ state that slows ribosome biogenesis. See doi.org/10.64898/202...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 24/08/2026
rdcu.be/fBJHf
rdcu.be
Structure of the NAT10 acetyltransferase and mechanism of tRNA acetylation
Nature Communications - RNA acetylation by NAT10 is linked to disease, but its catalytic mechanism is unclear. Here, the authors report cryo-EM structures of Chaetomium thermophilum NAT10 in...
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Reposted by @erzbergerlab.bsky.social
Chris H. Hill @chillzaa.bsky.social · 24/08/2026
Thrilled to share that our paper describing protein-dependent frameshifting is now out in Molecular Cell @cellpress.bsky.social. Huge congratulations to @jemmabetts.bsky.social for publishing the first research paper from her PhD 🧬🧪🥳 www.sciencedirect.com/science/arti... 1/8
sciencedirect.com
A protein-dependent riboswitch activates ribosomal frameshifting in cardioviruses
Programmed −1 ribosomal frameshifting (PRF) is a translational control mechanism used by RNA viruses to regulate the relative abundance of proteins en…
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 20/08/2026
rdcu.be/fA3dP
rdcu.be
Elucidating structure–function relationships in the mammalian nucleolus
Nature Reviews Molecular Cell Biology - The nucleolus is the site of ribosomal RNA synthesis and ribosome biogenesis. This Review discusses recent progress in understanding the dynamic,...
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Reposted by @erzbergerlab.bsky.social
Sebastian Baumgarten @sebbaumgarten.bsky.social · 19/08/2026
The singular job of all known ribosomes: synthesizing protein. Enter the malaria parasite. In our new work, we show that Plasmodium evolved an entire new kind that does just the opposite - inhibit mRNA translation. www.biorxiv.org/content/10.6...
biorxiv.org
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 12/08/2026
rdcu.be/fznIj
rdcu.be
SRP orchestrates protein biogenesis beyond initial ER membrane targeting
Nature Communications - Proteins reach the endoplasmic reticulum (ER) via multiple pathways, often aided by the Signal Recognition Particle (SRP). Here, authors show that SRP acts repeatedly during...
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Reposted by @erzbergerlab.bsky.social
Craig A. Goodman @craigagoodman1.bsky.social · 11/08/2026
mTOR inactivation governs adaptive survival to ribosome biogenesis deficiency genesdev.cshlp.org/content/earl...
genesdev.cshlp.org
mTOR inactivation governs adaptive survival to ribosome biogenesis deficiency
A biweekly scientific journal publishing high-quality research in molecular biology and genetics, cancer biology, biochemistry, and related fields
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 08/08/2026
rdcu.be/fyBEA
rdcu.be
The RNA helicase domain of NAT10 promotes the biogenesis of hypomodified ribosomes to enhance cancer cell proliferation
Nature Communications - The mechanisms underlying the role of N-acetyltransferase 10 (NAT10) in cancer remain poorly characterised. Here, PROTAC-mediated degradation of NAT10 with a deep mutational...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 08/08/2026
www.biorxiv.org/content/10.6...
biorxiv.org
BAG6-RNF115 Couples Protein Quality Control with Ribosome Assembly
Protein homeostasis relies on protein quality control (PQC) pathways that survey the proteome to eliminate aberrant polypeptides. The BAG6 complex is a central PQC factor that recognizes exposed hydro...
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Reposted by @erzbergerlab.bsky.social
Nature Biotechnology @natbiotech.nature.com · 06/08/2026
RNA-binding motifs in eukaryotic proteins are presented in a comprehensive resource go.nature.com/4mc1SmQ rdcu.be/fxFp9
go.nature.com
A resource of RNA-binding protein motifs across eukaryotes reveals evolutionary dynamics and gene-regulatory function - Nature Biotechnology
RNA-binding motifs in eukaryotic proteins are presented in a comprehensive resource.
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 04/08/2026
www.biorxiv.org/content/10.6...
biorxiv.org
A pre-rRNA positive feedback loop drives malignant ribosome biogenesis
Altered nucleoli are a well-established hallmark of cancer[1][1], but how oncogenic signalling remodels the nucleolus remains poorly understood. Here we used an inducible mouse model of pancreatic duc...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 30/07/2026
rdcu.be/fwQ5R
rdcu.be
Structural basis for chaperone-guided assembly of RNA-induced silencing complex
Nature - Structures of the AGO maturation complex reveal how chaperones and an RNA duplex drive assembly of the RNA-induced silencing complex.
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 23/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Quantitative profiling of basal and stress-induced ribosome collisions
Ribosomes stall when they encounter problematic codons or cellular stress that perturbs translation. Stalled ribosomes can lead to the formation of ribosome collisions, also known as disomes, that eng...
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Reposted by @erzbergerlab.bsky.social
Jeff Coller @jmcoller.bsky.social · 22/07/2026
New from my lab - Congrats to Dr. Suhee Chang. Nascent chain folding status modulates ribosome dynamics and mRNA stability through the ribosome-associated chaperone Zuo1: Molecular Cell www.cell.com/molecular-ce...
cell.com
Nascent chain folding status modulates ribosome dynamics and mRNA stability through the ribosome-associated chaperone Zuo1
Chang et al. show that co-translational protein misfolding feeds back to ribosomes, slowing translation elongation and triggering mRNA decay. The ribosome-associated chaperone Zuo1 mediates this respo...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 22/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
A pre-rRNA positive feedback loop drives malignant ribosome biogenesis
Altered nucleoli are a well-established hallmark of cancer[1][1], but how oncogenic signalling remodels the nucleolus remains poorly understood. Here we used an inducible mouse model of pancreatic duc...
020
erzbergerlab.bsky.social @erzbergerlab.bsky.social · 22/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Ribosome biogenesis bottlenecks reveal vulnerabilities in cancer
Cell growth requires elevated protein synthesis, which depends on the production of ribosomes. Ribosome biogenesis is a complex, multi-step pathway in which newly transcribed precursor ribosomal RNA (...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 17/07/2026
Structure and evolution-guided design of minimal RNA-guided nucleases | Science www.science.org/doi/10.1126/...
science.org
Structure and evolution-guided design of minimal RNA-guided nucleases
The design of RNA-guided nucleases with properties not limited by evolution can expand programmable genome-editing capabilities. However, generating diverse multidomain proteins with robust enzymatic ...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 16/07/2026
www.nature.com/articles/s41...
nature.com
Molecular basis of polyadenylated RNA fate determination in the nucleus - Nature
Biochemical, structural and cell biological analyses reveal that UAP56 (DDX39B) assembles with a TREX-2–like module that redirects non-functional polyadenylated RNAs from export to degradati...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 10/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Conformational diversity of collided ribosomes determines stress signaling
Translating ribosomes are stalled by amino acid starvation and by chemical damage of the mRNA template, leading to ribosome collisions. These collisions serve as signaling platforms that promote quali...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 10/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Mechanism of nucleolytic degradation of human ribosomes
Stresses like starvation trigger degradation of mature 40S ribosomes, requiring the coordinated breakdown of large and stable RNA-protein complexes. The atypical kinase RIOK3 orchestrates degradation ...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 10/07/2026
rdcu.be/fteu2
rdcu.be
The atypical E3 ligase HOIL-1 safeguards the ribosome during cellular stress
Nature Cell Biology - Douglas et al. study the E3 ligase HOIL-1, mutated in patients with a type of myopathy. Mutant HOIL-1 influences the sensitivity to disulfidptosis initiated by...
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 09/07/2026
www.biorxiv.org/content/10.6...
biorxiv.org
Evolution of a core ribosomal innovation in octopus
Much of biology focuses on how genetic changes mediate new functions, but less attention is given to adaptations in other steps of the central dogma. Octopuses exhibit complex nervous systems and soph...
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