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Ellinor Alseth

@ellinoralseth.bsky.social
2.1K followers 1.2K following 342 posts

Eco-evo with microbes. I happen to like fjords, I think they give a lovely baroque feel to a continent. The University of Tromsø. Opinions my own. She/her

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Reposted by Ellinor Alseth
Jesse Shapiro @bjesseshapiro.bsky.social · 13/10/2026
We lost a good one 😢
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Vaughn Cooper @vscooper.micropopbio.org · 13/10/2026
Adding my $.02 to the many quotes in this article: Helen Branswell's reporting on ID epidemiology was always so clear and informative. A cool drink of spring water when everything seemed muddy. A treasure. RIP.
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Gemma C. Atkinson @gemmaatkinson.bsky.social · 13/10/2026
Heads up! The Symposium on the Immune System of Bacteria 2027 is now open for registrations! 20-22nd July 2027, Churchill College, University of Cambridge, UK Places are limited, so register soon. Visit the website to see our fantastic line-up of speakers: sisb2027.info #phage
sisb2027.info
SISB 2027
Visit the post for more.
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Sarah McAnulty, Ph.D. @sarahmackattack.bsky.social · 11/10/2026
Oh good another grant rejection. We have applied for 7 grants so far this year, with a bunch more we’ll be applying for this fall. We’ve been rejected by 6, and got runner up for 1 of them, resulting in $1000. Our annual operating budget is 250k. Oh wait that reminds me. Anybody need a tote bag??
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Vaughn Cooper @vscooper.micropopbio.org · 09/10/2026
Glad to share this new Microbial Primer on Mirror Biology written w/ Jolien Sweere. It's free to all in the @microbiologysociety.org journal Microbiology, edited by Steve Diggle. Thanks for this opportunity to outline our scientific knowledge of this significant topic. doi.org/10.1099/mic....
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The Guardian @theguardian.com · 05/05/2026
Norwegian fish farms polluting fjords with waste likened to ‘raw sewage of millions of people’
theguardian.com
Norwegian fish farms polluting fjords with waste likened to ‘raw sewage of millions of people’
Exclusive: ‘Fish sludge’ in coastal waters now has nutrient levels equivalent to those in untreated effluent of country the size of Australia, report finds Norwegian fish farms are filling fjords and other coastal waters with nutrient pollution equivalent to the raw sewage of tens of millions of people each year, a report has found. Norway is the largest farmed salmon producer in the world, and nutrients in fish feed are excreted directly into coastal waters. Analysis from the Sunstone Institute found that Norwegian aquaculture released 75,000 tonnes of nitrogen, 13,000 tonnes of phosphorus and 360,000 tonnes of organic carbon in 2025. Continue reading...
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Ellinor Alseth @ellinoralseth.bsky.social · 08/10/2026
Congrats! 🥂
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 08/10/2026
Confirmed in post 🎉 passed probation and made permanent at Queen’s, woohoo! (Perhaps not the usual sense of relief given the current HE environment…. But nice nonetheless)
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Tatiana Dimitriu @tatianadimitriu.bsky.social · 08/10/2026
PhD opportunity! Join us in St Andrews to study the consequences of defence against conjugative plasmids (preprint coming soon on this!). Funded by EASTBIO, co-supervised by @mfwhite2.bsky.social. Please share & pass on to anyone interested! 🦠🧫 Deadline 16th November www.findaphd.com/phds/project...
findaphd.com
Eastbio: Mechanism and consequences of lethal zygosis in bacteria restricting AMR plasmids. at University of St Andrews on FindAPhD.com
PhD Project - Eastbio: Mechanism and consequences of lethal zygosis in bacteria restricting AMR plasmids. at University of St Andrews, listed on FindAPhD.com
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Dragons of Wales @dragonsofwales.bsky.social · 08/10/2026
Three books. One artist. No AI. (And a whole load of dinosaurs). #SciArt dragonsofwales.etsy.com/listing/1689...
dragonsofwales.etsy.com
EX|TERRA - Complete Collection Dinosaur Books - Etsy
This Art & Photography Books item by DragonsofWales has 484 favorites from Etsy shoppers. Ships from United Kingdom. Listed on Aug 27, 2026
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Carolin Wendling @ccwendling.bsky.social · 07/10/2026
Proud PI-moment - well deserved Lavisha
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Tom Gauld @tomgauld.bsky.social · 06/10/2026
My latest cartoon for @newscientist.com
As we join the great theoretical scientist, he is deep in thought. So still, quiet and focused that he might almost be asleep. But inside that brilliant mind, what new idea is forming? What certainty is being meticulously interrogated? What ingenious theory is ready to change our world forever? (the scientist snores lightly) Ah, it seems he actually is asleep. And that's fine. Science is hard and not every day can be a success. We will come back another time.
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Jean-Yves Tinevez @jytinevez.bsky.social · 05/10/2026
We have a position open in our core facility in the @pasteur.fr . Please share it and / or apply! forum.image.sc/t/research-e...
forum.image.sc
Research engineer in Bioimage Analysis. Institut Pasteur, Image Analysis Hub - 2026
Dear all Below is an announcement for a permanent position as a Research Engineer in the Institut Pasteur, Paris. There is a flyer attached at the bottom. We are looking ideally for a Bioimage An...
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Jeff VanderMeer @jeffvandermeer.bsky.social · 05/10/2026
Annihilation always makes Halloween lists, so I thought I'd do a thread of creepy reads. Starting today with a flat-out modern masterpiece, Max Lury's No Ghosts. Thoroughly contemporary and disturbing grounded in deep characterization, and, in part, outdoing Back Rooms while also its own thing. 1
No Ghosts in lower left, Max Lury in lower right. White hand reaching down, two eye holes in the wrist.
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Will Smith @willpjsmith.bsky.social · 07/10/2026
🚨 We're recruiting! 🚨 Are you interested in antimicrobials and their evolution? Join Me, @coytelab.bsky.social and Tucker Gillman as we build a "silicon colosseum" to model their advantages in bacterial communities! Do share with anyone who might be interested :) willsmithlab.com/2026/10/06/n...
willsmithlab.com
New vacancies opening! - SMITH lab @ Manchester University
Delighted to announce that the lab is recruiting! Bacteria poison prey and rivals using a diverse arsenal of weaponised toxins, spanning a huge diversity of molecular and interaction lengthscales. But...
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Alex Merz 🇺🇸🇨🇦🇺🇦 @merz.bsky.social · 06/10/2026
I am surprised and relieved to see that HHMI has re-opened the Hanna H. Gray Fellows Program this year, after pulling the rug on it last year, *after* applications had been submitted. This program is for postdocs who plan to transition into academic research careers. www.hhmi.org/programs/han...
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Alexander Harms @aharms485.bsky.social · 06/10/2026
Cover image alert 🎨🚨👇🏼 - check out the amazing drawing of Sophia Zimmermann from our group in Nature Microbiology @natmicrobiol.nature.com ! Fun fact: Sophia initially drew it as a present to Dorentina @humollidorentina.bsky.social when we celebrated her recent paper on TnSeq with phages 🥂😊.
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Jesse Shapiro @bjesseshapiro.bsky.social · 06/10/2026
Minimoy, the cat we are cat-sitting for the year, is my sabbatical spirit animal
Photo of a sleeping black and brown cat curled up on a sofa cushion
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Andrew Deck @andrewdeck.bsky.social · 05/10/2026
ChatGPT is adding the signatures of real New Yorker cartoonists to its AI-generated images. So far, I've found the signatures of more than 15 contributors. "It’s slop, and unlike the other slop that I’ve encountered, this is slop that’s pretending to be me." www.niemanlab.org/2026/10/chat...
Left: A cartoon generated by ChatGPT and signed with Emily Flake’s signature that was posted to a Reddit forum in June. Right: A real Emily Flake cartoon published in The New Yorker on August 20, 2026 and licensed via The Cartoon Bank.
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Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 06/10/2026
super cool from the @peterfineran.bsky.social et al Defining the essential genome of diverse phages with phage Tn-seq www.nature.com/articles/s41...
nature.com
Defining the essential genome of diverse phages with phage Tn-seq - Nature Microbiology
Phage Tn-seq uses Tn5 transposon mutagenesis with anti-CRISPR-based selection and deep sequencing as a method to generate unbiased, genome-wide mutations across diverse phages
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James Gurney @jamesgurney.bsky.social · 02/10/2026
www.biorxiv.org/content/10.6... New preprint from the lab. We tried to capture phage infection using scRNAseq. With admittedly mixed results. Importantly our reads weren’t random and we see predicted biological patterns. Phage gene expression along the genome for one 1/3
biorxiv.org
Robust Inference of Phage-Host Infection Dynamics from Sparse Single-Cell Transcriptomics Profiles in Pseudomonas aeruginosa
Phage therapy is providing a benefit to a limited number of people. To date those who have received phage therapy typically have done so via an IND expanded access mechanism, colloquially referred to ...
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Ben Parker @ben-parker.bsky.social · 21/09/2026
Excited that our new paper with @henrylabsymbio.bsky.social and Kerry Oliver is out @pnas.org! We show that mobile genetic elements can spread adaptive host-benefiting traits across heritable insect symbionts on eco-evolutionary timescales.🧵 www.pnas.org/doi/10.1073/...
pnas.org
Phenotypic divergence is driven by mobile genetic elements in a heritable insect symbiont | PNAS
Heritable microbes profoundly influence insect biology, yet the traits they confer often evolve rapidly and differ among closely related symbiont s...
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Malcolm White @mfwhite2.bsky.social · 01/10/2026
Nicely executed study on phage anti-defence rdcu.be/M7mrq41uU7Ma
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Lucas Moriniere @lucasmoriniere.bsky.social · 30/09/2026
Attention, phage friends! Our new work on predicting phage-host interactions is out in Nature Microbiology since yesterday! 👉 www.nature.com/articles/s41...
nature.com
Phylogeny-agnostic strain-level prediction of phage–host interactions from genomes using machine learning - Nature Microbiology
This platform identifies phages capable of infecting specific bacterial strains using genome sequences alone and could enable rational phage-therapy design and precision microbiome engineering.
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Marie Brennan @swantower.bsky.social · 29/09/2026
Forty-six hours to go, and this anthology is barely $100 away from funding! Don't make them come back and try again, and again, and again . . . (Even if it *would* be thematically appropriate.) www.backerkit.com/c/projects/m...
backerkit.com
OPPORTUNITY WINDOW: An Anthology of Time Loop Stories
Deja vu doesn't begin to cover it... OPPORTUNITY WINDOW will bring you a book of brand new time loop stories (and maybe some you've seen before) from across the SFFH genres!
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Anirudh Jakhmola @funnirudh.bsky.social · 30/09/2026
After a collective 28 hours of GPU time, the exosome for MD simulations for our iGEM project is ready. Now to do this exact thing 4 more times for other exosomes.
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explore.org @explore.org · 30/09/2026
Introducing your ultimate fighter and champion: Bear 89 Backpack 👑 Thanks for joining us for the biggest Fat Bear Week to date.
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Craig MacLean @craigmaclean.bsky.social · 30/09/2026
Postdoc position available in my group to work on ERC funded project on evolutionary biology of antibiotic resistance. Looking for someone with expertise in bacterial genetics, AMR, and evolutionary biology. www.jobs.ac.uk/job/DSZ416/p...
jobs.ac.uk
Postdoctoral Research Associate at University of Oxford
Explore an exciting academic career as a Postdoctoral Research Associate. Don't miss out on other academic jobs. Click to apply and explore more opportunities.
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Joshua Weitz @joshuasweitz.bsky.social · 29/09/2026
MAHA's ongoing commitment to radical transparency.
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Jesse Shapiro @bjesseshapiro.bsky.social · 29/09/2026
Our latest, spearheaded by the truly indefatigable @emderrick.bsky.social in which we search for selective sweeps in nature and genetic targets of selection within a species in the context of a diverse background community @isme-microbes.bsky.social doi.org/10.1093/isme... 🧵 1/n
doi.org
Validate User
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David Sünderhauf @davvi36.bsky.social · 29/09/2026
Super cool to finally see this out. Check out Anna's preprint for a PAO1 isolation host stripped of defence systems and prophage 👇🏻 Congrats all! 🥳
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Rita Strack @ritastrack.bsky.social · 28/09/2026
I love typos now because it's a little sign AI didn't write it.
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Mark Peifer (He, him) @peiferlabunc.bsky.social · 28/09/2026
Are you looking for a postdoc exploring the cell biology of development, defining how cells change shape and move? Do you want to develop a research program & teaching skills preparing you for a position at a college or small University? Our new NIH grant will support those goals 1/n Please share
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Joshua Weitz @joshuasweitz.bsky.social · 28/09/2026
Wonderful profile of our new colleague in the Dept. of Biology in Maryland, @couchmicroscopy.bsky.social with secrets yet to be uncovered into a major evolutionary transition hanging out in murky waters. www.nytimes.com/2026/09/26/s...
nytimes.com
In an $80 Motel Room, a Discovery to Shed Light on the Origins of Life (Gift Article)
A scrappy science project led to a significant discovery: two new species of a rare organism that could elucidate a fundamental transition in the history of life on our planet.
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Vaughn Cooper @vscooper.micropopbio.org · 27/09/2026
How do Burkholderia multivorans bacteria adaptively evolve during infections of the cystic fibrosis airway? A longtime collab and intensive study of 8 patients links bacterial adaptations to disease progression. Our findings also unite prior studies. www.biorxiv.org/content/10.6...
biorxiv.org
Convergent genetic evolution within Burkholderia multivorans chronic infections correlates with lung function decline in cystic fibrosis patients
The patterns and pathways of pathogen adaptation during chronic infections can reveal the gateways microbes must unlock to colonize and persist. In chronic lung infections of cystic fibrosis (CF) pati...
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Multi-Defence @multidefence.bsky.social · 28/09/2026
New preprint out!
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Carl Zimmer @carlzimmer.com · 27/09/2026
Four days ago, a scientist was surprised by the news that Anthropic discovered new virus genes for making DNA. He says he’s been studying them for years—and feeding his data to Anthropic’s AI as part of his own research. Coincidence? Here’s my story. nyti.ms/3VSWayc
nyti.ms
Did Anthropic’s A.I. Really Make a Scientific Discovery on Its Own? (Gift Article)
An expert at the University of Copenhagen said his team had been sharing its research with the company’s A.I. model, Claude, and that its new finding matched their work.
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Tominaga K. (tomiken) @pacyc184.bsky.social · 26/09/2026
Entry exclusion enables selective conjugative DNA delivery in synthetic bacterial communities. | bioRxiv
biorxiv.org
Entry exclusion enables selective conjugative DNA delivery in synthetic bacterial communities.
Selective DNA delivery to specific members of assembled bacterial communities remains challenging. Bacterial conjugation enables efficient DNA delivery, but transfer to non-target recipients limits its specificity within mixed communities. Here, we repurpose plasmid entry exclusion (Eex) as a recipient-side gate to control conjugative DNA delivery. We demonstrate selective plasmid delivery to Eex-negative recipients within populations containing both Eex-expressing and Eex-negative cells. This recipient selectivity was maintained at increased cell densities and during prolonged mating. By combining RP4-type and F-type conjugation systems with their corresponding exclusion modules, we further directed DNA delivery from distinct donors to defined recipient populations. RP4-derived Eex also functioned in environmental bacteria, including Pseudomonas putida and Sphingobium japonicum, enabling recipient-specific exclusion within a multispecies mixture. Furthermore, repeated cycles of Eex-guided conjugation and selection altered community composition after assembly. These results establish entry exclusion as a recipient-side strategy for selective conjugative DNA delivery and, when combined with selection, for controlling the composition of assembled bacterial communities. ### Competing Interest Statement The authors have declared no competing interest. Japan Society for the Promotion of Science, https://ror.org/00hhkn466, 19K15725, 25K18154, 24KJ0025 Institute for Fermentation, Y-2024-1-007
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Dorentina Humolli @humollidorentina.bsky.social · 25/09/2026
Very happy to share that HIDEN-SEQ is now out in @natmicrobiol.nature.com! Using this technique, we recapitulated decades of established phage genetics and uncovered new gene functions, including previously unknown anti-defense factors against several defense systems. www.nature.com/articles/s41...
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Alexander Harms @aharms485.bsky.social · 25/09/2026
The final version of our manuscript on TnSeq in bacteriophages (“HIDEN-SEQ”) is out today – if you have an interesting phage phenotype and want to know the underlying genetic basis, this one is for you! 1/4
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Malcolm White @mfwhite2.bsky.social · 25/09/2026
New from the @multidefence.bsky.social consortium: a deep dive into MANTIS defence. Thanks to @ukri.org for funding. www.biorxiv.org/content/10.6...
biorxiv.org
Dual ATPase-activated DNA hemimethylation and cleavage by the MANTIS defence system
Bacterial defence systems are diverse and form major barriers to horizontal gene transfer and bacteriophage (phage) infection. Though restriction-modification systems were the first such defences disc...
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Freya Harrison @friendlymicrobe.bsky.social · 25/09/2026
What‘s the biggest, most exciting or nagging unanswered question in biology? What do you really, really wish we knew the answer to? I’m crowdsourcing responses to these Qs for my welcome talk to new Biology undergrads next week. I’d love to know your thoughts - thank you in advance!
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Daniel Padfield @padpadpadpad.bsky.social · 24/09/2026
You know your life is going well when it's covered by @georgemonbiot.bsky.social. Severe ME takes everything and yet we don't know how to treat it. The NHS regularly just ignores sufferers as a result.
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Evgenii Protasov @evgenii-protasov.bsky.social · 24/09/2026
An eco-evolutionary theory of host-associated microbiomes #microbiology #microbiomes #evolution #MicroSky @pnas.org www.pnas.org/doi/abs/10.1...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Simonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026
Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇
nature.com
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Vaughn Cooper @vscooper.micropopbio.org · 23/09/2026
Fantastic, comprehensive, useful review if you care about RNA modifications in bacteria: @asm.org @csdetweiler.bsky.social journals.asm.org/doi/10.1128/...
journals.asm.org
Compendium of RNA modifications for bacterial stress adaptation | Microbiology and Molecular Biology Reviews
SUMMARYRNA modifications in the tRNA, rRNA, and mRNA constitute a widespread layer of post-transcriptional gene regulation, commonly known as the epitranscriptome. In bacteria, tRNA and rRNA modificat...
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PLOS Biology @plosbiology.org · 23/09/2026
#PhageTherapy can fail when the immune system makes antibodies against therapeutic viruses. This study shows that fiber- and nozzle-specific antibodies block phage infection and promote aggregation-driven, Fc receptor-independent phagocytosis. 🧪 #ImmuneSky #structure #virus buff.ly/J0FOg9g
The image shows a reconstructed model of antibody-induced phage aggregation. Phage therapy, which uses bacteria-specific viruses to treat bacterial infections, is a highly promising therapeutic strategy in the era of precision medicine. Increasing evidence suggests that antibodies generated during phage therapy can affect the efficacy of phage therapy and, in some cases, even lead to treatment failure. However, the molecular mechanisms by which phage-specific antibodies cause phage therapy failure remain to be elucidated. Using Acinetobacter baumannii and its podovirus phage AbP20 as a model, the authors revealed the antibodies targeting phage fiber and nozzle proteins induced the formation of large-sized tail-to-tail phage aggregates which possess reduced infection and facilitated susceptibility to phagocytosis, providing a new clue to understand phage-specific antibodies induced therapy failure.  
This image was created by Heng Xue and Hang Yang.
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Daria Van Tyne @dariavantyne.bsky.social · 22/09/2026
My lab at Pitt is looking for a Laboratory Technician to help our research and phage therapy efforts. Please share and apply! cfopitt.taleo.net/careersectio...
cfopitt.taleo.net
Laboratory Technician
Click the link provided to see the complete job description.
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