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Cheyenne Payne

@cheyennepayne.bsky.social
170 followers 159 following 5 posts

postdoc @ NOAA + UCSC ~ conservation, genomics, evolution of fishes 🐟🧬🌝 | she/her

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Reposted by Cheyenne Payne
ybrandvain.bsky.social @ybrandvain.bsky.social · 04/09/2026
I'm excited to release the newest version of my free applied biostats textbook. It's tidyverse style, clarkia inspired and loads of fun Im putting this down until the end of the semester, when I'll add and polish additional chapters, but the 1st 21 are pretty solid yanivjb.github.io/biostats-book
yanivjb.github.io
Applied Biostatistics
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Tom Near @tjnear.bsky.social · 29/08/2026
1/11 🐟 2nd new preprint today from @chasedbrownstein.bsky.social We investigated how losing the swim bladder, the organ that most fishes use to control their buoyancy, has shaped the diversity of ray-finned fishes over 90 million years of Earth history. The results surprised us. 🧵
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 26/08/2026
For folks interested I just posted my keynote on ARGs from #PEQG26 on youtube (with permission). Thanks again to @genetics-gsa.bsky.social and organizers for what was a wonderful conference (except for the 24hrs prior to my talk when I was too nervous to sleep or think straight) youtu.be/ntJOdZd0mwc
youtu.be
PEQG Keynote 2026
YouTube video by Jeffrey Ross-Ibarra
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Matt Kustra @matt-kustra.bsky.social · 24/08/2026
New preprint led by amazing undergrad @ogolwala.bsky.social! Within ~10,000 years, sperm traits have diverged between trophic specialists in this young radiation of pupfish. Hybrids are fertile, but show transgressive sperm kinematics and reorganized integration. With @fishspeciation.bsky.social.
Density plots of sperm straightness comparing two species of pupfish (molluscivore and scale-eater) and their hybrids. Hybrids have straighter sperm than the parental species.
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Graham Coop @gcbias.bsky.social · 12/08/2026
Excited for @gabrielesgarlata.bsky.social’s new preprint on the Genome-Wide Effect of Drift and Selection over a Single Generation 1/n www.biorxiv.org/content/10.6...
biorxiv.org
The Genome-Wide Effect of Drift and Selection over a Single Generation
The relative importance of genetic drift versus selection to evolutionary change has long been debated. This debate has mainly focused over long-time-scales (e.g. hundreds of thousands of generations)...
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Wes Larson @wes-larsonak.bsky.social · 24/06/2026
We're hiring a genetics lab manager position at NOAA in Juneau, Alaska! The successful candidate will oversee day-to-day laboratory operations and contribute to the development of new molecular methods. Salary is $75-145k/yr. Email wes.larson@noaa.gov with questions www.usajobs.gov/GetJob/ViewD...
usajobs.gov
Biologist (Omics)
This position is located in the National Oceanic and Atmospheric Administration (NOAA), National Marine Fisheries Service (NMFS). Vacancies may be available in each listed location. Additional duty lo...
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Tris Dodge @tododge.bsky.social · 09/06/2026
Excited to share new work on two sex-linked pigment traits in Xiphophorus! This project was led by undergrad @lagiven.bsky.social, who’s worked with me for the last 3(!) years. www.biorxiv.org/content/10.6...
biorxiv.org
Two melanic pigment patterns are associated with a sex chromosome-linked oncogene in the mountain swordtail Xiphophorus nezahualcoyotl
Sex-linked traits are widespread, but their genetic architecture has been challenging to characterize, due in part to the repetitive and structurally complex nature of sex chromosomes. In swordtails a...
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Molly Schumer @mollyschumer.bsky.social · 24/04/2026
Job ad now available here: careersearch.stanford.edu/jobs/life-sc...!
careersearch.stanford.edu
Life Science Research Professional 1 in School of Humanities and Sciences, Stanford, California, United States
Life Science Research Professional 1 (On-Site Only)This position has been deemed critical by the School of Humanities and Sciences Dean’s Office and.....
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Colin Carlson @colincarlson.bsky.social · 09/04/2026
New in @science.org ‼️ In the most comprehensive study to date, we show that wildlife trade is driving animal-to-human zoonotic spillover at a planetary scale, with +1 spillover per host every 10 years. Live animal markets and illegal trade pose even greater risks. 🔓 www.science.org/doi/10.1126/...
Wildlife trade drives animal-to-human pathogen transmission over 40 years
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Russ Corbett-Detig @russcd.bsky.social · 31/03/2026
Alex Kramer, Alan Zhang and friends posted our preprint today. In it, we introduce Panmap, a tool for phylogenetic placement, assembly, lineage abundance estimation, and eDNA assignment using phylogenetic pangenomes. www.biorxiv.org/content/10.6...
biorxiv.org
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Jeff Spence @jeffspence.github.io · 31/03/2026
We are destroying species' habitats, leading to a mass extinction event. This habitat destruction also reduces the genetic diversity _within_ species. Our latest work develops quantitative models to predict how much genetic diversity has been and _will be_ lost. 🧬🧪🧵 www.pnas.org/doi/10.1073/...
pnas.org
Large future genetic diversity losses are predicted from conservation indicators even with habitat protection | PNAS
Genetic diversity within species underpins evolutionary adaptation and has recently been included as a target for protection in the United Nations’...
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Olivia Ghosh @oliviamghosh.bsky.social · 30/03/2026
Really excited that this major work from my PhD is finally published in @plosbiology.org ! In it, we were trying to tackle a fundamental question in evolution - how do genetic mutations map onto evolutionary fitness? (1/n) journals.plos.org/plosbiology/...
journals.plos.org
Genotype-fitness mapping of adaptive mutants reveals shifting low-dimensional structure across divergent environments
Predicting the effect of a genetic mutation on fitness is a major challenge in evolutionary biology. This study uses fitness effects of a large collection of adaptive yeast mutants in multiple lab env...
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Dr. Solomon David @solomonrdavid.bsky.social · 21/03/2026
Introduced [fish] species can wreak havoc on native ecosystems. Many states are flooding their waterways with them. www.vox.com/climate/4831...
vox.com
These animals can cause big trouble. Why are states unleashing them by the millions?
Introduced species can wreak havoc on native ecosystems. Many states are flooding their waterways with them.
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James Hemker @jahemker.bsky.social · 11/03/2026
Proud that this work is now published! We hope it helps orient future #Nanopore long-read sequencing studies hunting for structural variants Also really happy to share eight new high-coverage (>100x) long-read read pools and assemblies with the #Drosophila community! doi.org/10.1093/g3jo...
doi.org
Manual validation finds ultra-long-read sequencing best enables faithful, population-level structural variant calling in Drosophila melanogaster euchromatin with nanopore
Abstract. The increasing accessibility of long-read sequencing and the rapid development of automated variant callers are promoting the generation of popul
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Jenn Coughlan @jenncoughlan.bsky.social · 10/03/2026
I am SO THRILLED to share our first fully-lab lab paper!!!!!! Led by @hybridzones.bsky.social & @hagarsoliman.bsky.social, w/ a major assist from @pfschwarz.bsky.social!!!!!!!!!!!!! Read more below, if you're curious (you should be- it's AWESOME!!!!!!!) link: www.sciencedirect.com/science/arti...
sciencedirect.com
Introgression and parental conflict shape repeated occurrences of postzygotic isolation in Mimulus
Postzygotic reproductive isolation is often thought to accumulate as a byproduct of neutral divergence. Yet it frequently evolves rapidly, in line wit…
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Minnesota Reformer @minnesotareformer.com · 11/02/2026
The Bishop Henry Whipple Federal Building looms in the background of the camp at Coldwater Spring, or Mni Owe Sni, at Fort Snelling along the Mississippi River — where the U.S. government in the mid-1800s killed hundreds of Dakota people and imprisoned more than 1,600 in a concentration camp.
minnesotareformer.com
Native activists set up prayer camp outside Minneapolis ICE detention center • Minnesota Reformer
Tribal members and descendents set up tipis and a fire at a Fort Snelling Park for four days of prayer for those detained by ICE
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The EMBO Journal @embojournal.org · 03/02/2026
How do compartmentalization & loop extrusion organize eukaryotic genomes beyond classical model organisms? Hi-C analysis of silkworm chromosomes by Drinnenberg, Muller, Mirny et al reveals new combination of these mechanisms, and a new, secluded “S” compartment link.springer.com/article/10.1...
link.springer.com
Unique territorial and compartmental organization of chromosomes in the holocentric silkworm - The EMBO Journal
Hallmarks of multicellular eukaryotic genome organization are chromosome territories, compartments, and loop-extrusion-mediated structures, including TADs. However, these have mainly been observed in ...
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Matt Kustra @matt-kustra.bsky.social · 29/01/2026
New paper out in @funecology.bsky.social y.social: Warm waters undermine cryptic female choice! We find ovarian fluid only has a positive effect on sperm function at colder temperatures and that sneaker males have faster sperm than dominant nesting males at warmer temperatures. (1/3)
besjournals.onlinelibrary.wiley.com
Warm waters undermine cryptic female choice
Read the free Plain Language Summary for this article on the Journal blog.
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Brugues Lab @brugueslab.bsky.social · 28/01/2026
Really excited to share our new paper in @nature.com! We uncovered how a physical instability of the cytoplasm coupled with the cell cycle drives cytoplasmic partitioning in early embryos #zebrafish #drosophila. Read more in this🧵 www.nature.com/articles/s41... 🤩 @poldresden.bsky.social @mpi-cbg.de
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Margaret Killjoy @margaret.bsky.social · 22/01/2026
I came to Minneapolis to report on what's going on, and one of the main questions I showed up with is "just what is the scale of the resistance?" After all, we're all used to the news calling Portland a "war zone" or whatever when it's just some protests in one part of town.
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Pimiento Research Group @pimientogroup.bsky.social · 22/01/2026
Our new paper is online! We found that 1) today's shark & ray diversity was already reached ~100Ma; 2) that the K/Pg extinction was not catastrophic; 3) that the max diversity was reached ~50Ma; and 4) that today's diversity is depleted compared to the past. www.cell.com/current-biol...
cell.com
Revealing the hidden patterns of shark and ray diversity over the past 145 million years
Gardiner et al. reconstruct the diversity of sharks and rays across the past 145 million years using deep learning and an extensive dataset. Their results unveil previously hidden patterns, including ...
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Veronika Meduna @veronikameduna.bsky.social · 14/01/2026
Not a single day in 2025 was cooler than the 1991-2020 average, on a global scale. @copernicusecmwf.bsky.social
A graph showing daily temperature anomalies since the 1940s
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Stand Up for Science! @standupforscience.net · 13/01/2026
Consulted with our entomologist at SUFS on what kind of invertebrate Thom Tillis is:
Text conversation reading: 
1: "What kind of bug would Thom Tillis be?"
2: "There’s a blue fainting beetle that enthusiastically does nothing at the sign of trouble."
1: (image of a blue beetle with a knobbly carapace) "The blue death feigning beetle?"
2: "Yuppppp"
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Mary Peltola @marypeltola.com · 12/01/2026
My name is Mary Peltola, and I'm running for U.S. Senate to fight for fish, family, and freedom – and that begins with fixing the rigged system in DC that’s shutting down Alaska. We need systemic change if we're going to lower costs, save our fisheries, and fill our homes with abundance again.
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Will Oestreich @will-oestreich.bsky.social · 07/01/2026
🧪New preprint! tinyurl.com/mr7km2pv When & why do predators share social information? Blue whales produce foraging calls when prey (krill) are abundant & dense, conditions arising from physical oceanographic forcing across temporal scales. Variation in ocean physics shapes blue whale communication!
ecoevorxiv.org
Biophysical ecosystem variation shapes oceanic predator communication
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Jenn Coughlan @jenncoughlan.bsky.social · 12/01/2026
This seems like a really great initiative! If you know any Trans scientists who might be interested in joining a broader community, please pass along! transscientistcollective.carrd.co
transscientistcollective.carrd.co
trans scientist collective
Trans Scientist Collective Landing Page and Interest From
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Casey Dunn @caseywdunn.bsky.social · 09/01/2026
Our eLetter github.com/caseywdunn/s... responding to a recent Science paper was just posted. The paper found more genes with consistent support for sponge-sister than ctenophore-sister. We found several technical issues that, when corrected, reverse the conclusions and recover ctenophore-sister.
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Conrad Hackett @conradhackett.bsky.social · 06/01/2026
Please share - @pewresearch.org wants to hire a data archivist who will be an advocate for data users, helping to ensure that our datasets are easy to discover and reuse by researchers, journalists, and the public. pewtrusts.wd5.myworkdayjobs.com/CenterExtern...
Pew Research Center is seeking a Data Archivist to support our commitment to open science and data transparency. This newly created role will play a key part in enhancing the accessibility, usability, and reproducibility of our research data while continuing to protect the privacy and identity of our survey participants. 

As Data Archivist, you will lead efforts to create and implement best practices for preparing, documenting, and disseminating datasets. These best practices should maximize FAIR (Findable, Accessible, Interoperable, and Reusable) principles while minimizing disclosure risk. You will work across teams to ensure our data is well-organized and thoroughly documented. 

You will serve as an internal advocate for data users, helping to ensure that our datasets are not only accurate and comprehensive but also easy to discover and reuse by researchers, journalists, and the public.   

This is a full-time, Pew Research Center position. The position is funded by an external grant and limited to a two-year term.   Primary Responsibilities 

Develop optimization procedures to improve discoverability of our datasets on internal and external platforms 

Develop and maintain standards to improve accessibility of our microdata and tab plans by changing/adding formats and/or adding documentation 

Identify metadata documentation best practices and a process to implement those best practices at the Center 

Work with Legal to evaluate most appropriate license to publicly share the Center's survey data, including Creative Common options

Identify and correct processing inefficiencies in our data publication process 

Sit on the internal Disclosure Risk Taskforce 

Document analytical decisions and code to support transparency and replicability, including the development of a RACI chart for publishing code to recreate derived variables that are used in reports but are not included in the microdata 

Manage/create merged time series datasets for select Center datasets 

Identify a process for internally archiving data and projects that are no longer in active use 

Identify and implement a process to assign Digital Object Identifiers (DOI) to microdata 

Prepare and upload public-facing datasets and restricted-use datasets for external sharing. 

Train staff on FAIR principles and best practices in data archiving. Education/Training/Experience 

Bachelor’s degree required, preferably in library sciences, organizational management, or a related field.  

5-7 years of experience with data archiving, database management, or survey research. This may include graduate training at the MA/PhD level or equivalent experience in an applied setting. 

At least 3-5 years of experience applying FAIR and open science principles. 

Background in social science research or data curation. 

Experience in data management, archiving, or research support. 

Familiarity with FAIR principles, Creative Common licensing, data privacy principles, and exposure risk.

Proficiency in metadata standards and documentation tools. 

Experience managing research projects, including working collaboratively with a multidisciplinary team. 

Experience with statistical software (e.g., R, Python, Stata) and reproducible research workflows. 

 

 

Knowledge, Skill and Workplace Requirements 

Strong organizational and communication skills. 

Detail oriented with exacting standards to maintain accuracy and impartiality in all work products. 

Ability to work independently to carry out special projects from start to finish. 

Ability to balance numerous tasks simultaneously. 

Ability to work collaboratively and collegially with other team members, as well as with staff from other Pew Research Center teams. 

Ability to balance competing priorities and identify optimal solutions 

 

FLSA Status: Exempt  

Compensation: Starting salary is commensurate with experience within the range of $100,000 - $120,000. 

Hybrid Work Schedule: Pew Research Center staff are required to be present in the Center’s Washington, D.C., office three core days weekly (Tuesday, Wednesday, Thursday).  Staff may work virtually from remote locations on other days in a typical work week.
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Colette Delawalla, PhD @cdelawalla.bsky.social · 05/01/2026
If this makes you mad…turn your anger into action. There are articles of impeachment against RFK jr. in the House. Sign the petition, call your rep, send a quack-o-gram, and share with LITERALLY EVERYONE YOU KNOW. This isn’t going to stop unless we make it. Standupforscience.net/impeach-rfkjr
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Dr. Merritt Rae Turetsky @queenofpeat.bsky.social · 05/01/2026
Let’s make 2026 the year of the bog. The world’s most unique and interesting plants, clean water, cooler climate. Bogs deserve our thanks, care, and deep respect. Please join me and love a bog today.
Image of an Alaskan bog with water and red moss in the foreground and trees in the background.
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Rebecca R Helm @rebeccarhelm.bsky.social · 09/08/2024
Friendly neighborhood biologist here. I see a lot of people are talking about biological sexes right now. Lots of folks make biological sex seem really simple. Well, since it’s so simple, let’s find the biological roots, shall we? Let’s talk about sex...[a thread] (Reposted from the other site)
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 25/12/2025
Balanced polymorphism in a floral transcription factor underlies an ancient rhythm of daily sex alternation in avocado www.biorxiv.org/content/10.64898/20…
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Rob Noble @robjohnnoble.bsky.social · 21/12/2025
No contest. Just read the first two sentences of the abstract. www.nature.com/articles/s41...
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Nature Ecology & Evolution @natecoevo.nature.com · 19/12/2025
Population genetics analysis in a phylogenetic framework shows convergent evolution in the genomes of five brood-parasitic species, including selection on genes involved in spermatogenesis, sperm function and nervous system development 🧪 www.nature.com/articles/s41...
nature.com
Comparative population genomics reveals convergent adaptation across independent origins of avian obligate brood parasitism - Nature Ecology & Evolution
Population genetics analysis in a phylogenetic framework shows convergent evolution in the genomes of five brood-parasitic species, including selection on genes involved in spermatogenesis, sperm func...
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Nandita Garud @nanditagarud.bsky.social · 17/12/2025
Grateful to share our paper on gene-specific selective sweeps in human gut microbiomes, now out in Nature! It has been a joy to work with @rwolff.bsky.social, whose insights and hard work made this possible. www.nature.com/articles/s41...
nature.com
Gene-specific selective sweeps are pervasive across human gut microbiomes - Nature
Development and application of the integrated linkage disequilibrium score (iLDS) reveals both selective pressures impacting the human gut microbiome and the mechanisms by which gut bacteria adapt to ...
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Leyan Wang @leyan-wang.bsky.social · 26/11/2025
We are excited to share our recent work on the surprising robustness of Ancestral Recombination Graph (ARG) inference tools to computational phasing errors, now available on BioRxiv: biorxiv.org/content/10.1.... This work is co-advised by @yundeng.bsky.social and Rasmus Nielsen. 1/7
biorxiv.org
Robustness of Ancestral Recombination Graph Inference Tools to Phasing Errors
Ancestral Recombination Graphs (ARGs) are fundamental population genetic structures that encode the genealogical history of a sample of haplotypes along the genome. They have recently received substan...
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Prakhar Jaiswal @prakharj.bsky.social · 06/12/2025
Recently had the chance to hear @carlbergstrom.com on information foraging in the current space of LLMs. He and @jevinwest.bsky.social have crafted a course that touches various facets of LLMs. Just finished reading through its 18 modules. Absolutely loved it! thebullshitmachines.com
thebullshitmachines.com
Modern-Day Oracles or Bullshit Machines: Introduction
A free online humanities course about how to learn and work and thrive in an AI world.
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Roshni Patel @roshnipatel.bsky.social · 01/12/2025
Excited to share work from my postdoc with @docedge.bsky.social and collaborators Matt Pennell and @jgschraiber.bsky.social, newly out over the weekend: www.biorxiv.org/content/10.1... (1/6)
biorxiv.org
Observational epidemiological studies can mitigate genetic confounding with the genetic relatedness matrix
Observational studies are commonly used in psychology and epidemiology to identify risk factors correlated with health outcomes. However, these studies are vulnerable to confounding when shared geneti...
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H. B. Beryl Rappaport @hbrappap.bsky.social · 25/11/2025
So happy to announce our new preprint, “A geothermal amoeba sets a new upper temperature limit for eukaryotes.” We cultured a novel amoeba from Lassen Volcanic NP (CA, USA) that divides at 63°C (145°F) 🔥 - a new record for euk growth! #protistsonsky 🧵
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Jacopo Razzauti @jacoporazzauti.bsky.social · 19/11/2025
Our preprint is out! www.biorxiv.org/content/10.1... Peter Skovorodnikov and I are excited to present FERAL: a new video-understanding toolkit that maps raw video directly to behavior, no pose estimation required. It works across species, from lab to field, and even in collective systems. (🧵1/n)
biorxiv.org
FERAL: A Video-Understanding System for Direct Video-to-Behavior Mapping
Animal behavior unfolds continuously in time, yet quantitative analyses often require segmenting it into discrete, interpretable states. Although manual annotation can achieve this, it remains slow, s...
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Jeff Spence @jeffspence.github.io · 19/11/2025
@hakha.bsky.social and I wrote a Research Briefing (with a lay summary + "behind the scenes") of our paper on how genes are prioritized by GWAS and rare variant burden tests. 🧬🧪 www.nature.com/articles/d41...
nature.com
How do genetic association studies rank genes?
Genome-wide association studies and rare-variant burden tests reveal complementary aspects of trait biology.
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Jess Smiley-Rhodes @j-smiley-rhodes.bsky.social · 18/11/2025
Thrilled to finally share the magnum opus of my PhD that focuses on the genetic basis of evolutionary change! Specifically, we know we can map the genetic basis of a trait, but can we tell which genes will underlie the trait shift when it evolves? doi.org/10.1101/2025...
doi.org
High-resolution mapping of a rapidly evolving complex trait reveals genotype-phenotype stability and an unpredictable genetic architecture of adaptation
The extent to which adaptation can be predicted, particularly for traits with complex genetic bases, is unknown. Here, we leveraged a model complex trait, model species, and high-powered longitudinal ...
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Shawn Burgess @burgesslab.bsky.social · 17/11/2025
Folks, it is finally out! Our paper on T2T assemblies of the zebrafish genome is on BioRxiv: www.biorxiv.org/content/10.1...
biorxiv.org
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Nature @nature.com · 14/11/2025
Nature research paper: An ancient recombination desert is a speciation supergene in placental mammals go.nature.com/47UiBWa
go.nature.com
An ancient recombination desert is a speciation supergene in placental mammals - Nature
Deep learning methods identified a large and evolutionarily conserved X-linked low recombination region in placental mammals that serves as both a barrier to gene flow in hybridizing lineages and an accurate phylogenomic marker.
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Jenna Norton @jenna-m-norton.bsky.social · 14/11/2025
Can confirm. I am okay and more motivated than ever to speak up. Nothing scares this administration more. Their power lies in our silence.
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Nadia Haghani @nadiahaghani.bsky.social · 12/11/2025
Beyond excited to share my PhD work thus far, now up as a preprint! We found that a transposable element insertion is responsible for the recent evolution of an novel color trait. Feeling thankful to everyone who has helped in this project and thrilled to continue learning about "sparkle"!
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Cheyenne Payne @cheyennepayne.bsky.social · 12/11/2025
✨ this is the skin of a swimmer, Bella ✨ awesome work led by @nadiahaghani.bsky.social that identifies what makes a swordtail fish sparkle 🪩
A hand holds up a female swordtail fish with iridescent scales
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Sophie Jean Walton @sophiejwalton.bsky.social · 11/11/2025
Super excited that the bulk of my PhD work is now preprinted! Here we used whole-community competition, or coalescence, experiments to quantify selection acting on genetically diverged strains within larger communities. (1/n) www.biorxiv.org/content/10.1...
biorxiv.org
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Tom Iwanicki @iwanicki.bsky.social · 10/11/2025
In our last thread, we left the jelly-enjoyers of Bluesky with a cliff hanger ending, in what one eager onlooker described as soap opera science 😜 ... wait no more, we are back! Grab your popcorn shrimp and come with us on a journey spanning more than... bsky.app/profile/iwan...
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 11/11/2025
Insertion of an invading retrovirus regulates a novel color trait in swordtail fish www.biorxiv.org/content/10.1101/202…
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