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Anush Chiappino-Pepe

@anush-chp.bsky.social
977 followers 1.8K following 57 posts

Engineering the code of life for cellular insights + new chemistries/functions/technologies w #SynBio #CompBio | Research Associate w GM Church @ Harvard/Wyss, G Stephanopoulos @ MIT | #BioChemE #GeneticCodeExpansion #Metabolism www.anushchiappinopepe.com

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Reposted by Anush Chiappino-Pepe
Hannes Stark @hannes-stark.bsky.social · 26/10/2025
Excited to release BoltzGen which brings SOTA folding performance to binder design! The best part of this project is collaborating with a broad network of leading wetlabs that test BoltzGen at an unprecedented scale, showing success on many novel targets and pushing the model to its limits!
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Sebastian S. Cocioba @atinygreencell.bsky.social · 03/09/2025
Empathy and kindness are becoming rather rare traits these days. There is nothing more important than treating each other like the finite mortal short-lived nociceptive beings we are. A life lived in apathy feels so much shorter and far too cold. Try to love more while you live.
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Johannes Stein @jmstein.bsky.social · 13/08/2025
(1/n) DNA-PAINT imaging inside the nucleus at single antibody resolution using TIRF? Ultrathin sectioning makes it happen! Grateful to share my postdoctoral work introducing “tomographic & kinetically-enhanced DNA-PAINT” or in brief: tkPAINT. Out in @pnas.org! doi.org/10.1073/pnas... 👇🧵
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Tae Seok Moon @taeseokmoon.bsky.social · 20/07/2025
Important work for engineered microbial therapeutics @science.org "Controlled colonization of the human gut with a genetically engineered microbial therapeutic" "a therapeutic candidate that reduced hyperoxaluria, a cause of kidney stones" www.science.org/doi/10.1126/...
science.org
Controlled colonization of the human gut with a genetically engineered microbial therapeutic
Precision microbiome programming for therapeutic applications is limited by challenges in achieving reproducible colonic colonization. Previously, we created an exclusive niche that we used to engraft...
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Žiga Avsec @avsecz.bsky.social · 25/06/2025
Excited to launch our AlphaGenome API goo.gle/3ZPUeFX along with the preprint goo.gle/45AkUyc describing and evaluating our latest DNA sequence model powering the API. Looking forward to seeing how scientists use it! @googledeepmind
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Eric Topol @erictopol.bsky.social · 23/06/2025
This is wild! Engineering E. coli bacteria to turn plastic waste into paracetamol (Tylenol) www.nature.com/articles/s41... www.nature.com/articles/s41...
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Science in Boston @scienceinboston.com · 17/06/2025
We're one step closer to recreating the brain’s immune system in a dish thanks to researchers at @wyssinstitute.bsky.social & @harvardmed.bsky.social!🧫 Dr. George Church's (@geochurch.bsky.social) lab created #microglia from #iPSCs that resemble microglia from humans: bit.ly/4jPxYTJ
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Joachim Frank @joachim123.bsky.social · 07/06/2025
I was among a few people at Columbia interviewed by Chemical and Engineering News (this is one of my faculty colleagues on the cover): cen.acs.org/policy/resea...
cen.acs.org
At Columbia, dismay among chemical scientists
Some have already lost grants, while others fear for students and future funding
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The Wyss Institute at Harvard University @wyssinstitute.bsky.social · 28/05/2025
The US has been a preeminent force in the global economy for the past 50 years, mainly due to its leadership in technological innovation. The abrupt changes in government funding for scientific research can stop this innovation engine. Hear more from our community about the importance of science.
wyss.harvard.edu
The Importance of Science
The United States has been the preeminent force in the world economy for the past 50 years because it has been the leader in technology innovation. The abrupt changes in government funding for scienti...
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Chang Liu @chang-c-liu.bsky.social · 24/05/2025
Happy to share the peer-reviewed and updated version of our work on OrthoRep-driven evolution of aaRSs for genetic code expansion with unnatural amino acids. Congrats to Yuichi Furuhata, a true master bioengineer, on leading this excellent work! www.nature.com/articles/s41...
nature.com
Directed evolution of aminoacyl-tRNA synthetases through in vivo hypermutation - Nature Communications
Genetic code expansion (GCE) enables the incorporation of new amino acids into proteins. Here, authors demonstrate the rapid OrthoRep-driven evolution of aminoacyl-tRNA synthetases for GCE, increasing...
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Anush Chiappino-Pepe @anush-chp.bsky.social · 23/05/2025
A lot is happening, but science keeps me excited and energized. This is how much we scientists care about discovery and making a positive impact on society. Thank you to everyone who supports us.
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Carl T. Bergstrom @carlbergstrom.com · 22/05/2025
Harvard today, your institution tomorrow. It's all part of the Project 2025 plan to destroy high education in America. All leading US universities depend on federal funding and tuition dollars from international students. They severely curtailed the former. Now they're eliminating the latter.
The Trump administration on Thursday halted Harvard University’s ability to enroll international students, taking aim at a crucial funding source for the nation’s oldest and wealthiest college in a major escalation in the administration’s efforts to pressure the elite school to fall in line with the president’s agenda.
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John Skiles Skinner @skiles.blue · 14/05/2025
Let's talk about these two department store owners: brother and sister Louis Bamberger and Caroline Bamberger Fuld. From Newark, New Jersey. They are random people, basically. But in the late 1920s, with fascism taking over Europe, they made a choice that profoundly changed the world: 🧵
A photograph of Louis Bamberger, seated on the right, wearing a mustache and bowler hat, and his sister Caroline Bamberger Fuld, standing on the left, wearing a fur hat and shawl
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Magdalena Skipper @magdalenaskipper.bsky.social · 09/05/2025
Vibrio natriegens has been engineered for bioremediation of complex organic pollutants - biphenyl, phenol, naphthalene, dibenzofuran and toluene - in saline wastewater and soils 🧪 www.nature.com/articles/s41...
nature.com
Bioremediation of complex organic pollutants by engineered Vibrio natriegens - Nature
A synthetic biology approach was used to engineer Vibrio natriegens into a strain capable of bioremediating complex organic pollutants in saline wastewater and soils, thereby addressing notable threat...
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The Wyss Institute at Harvard University @wyssinstitute.bsky.social · 29/04/2025
Elizabeth Hann imagines a future where food production is more sustainable. She's developing microbes that produce commodities more sustainably. Learn more about Elizabeth & her work in this month’s #HOWyss.
wyss.harvard.edu
Elizabeth Hann on Using Microbes to Save the Earth
The Humans of the Wyss (HOW) series features members of the Wyss community discussing their work, the influences that shape them as professionals, and their collaborations at the Wyss Institute and be...
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Nick Polizzi @nickpolizzi.bsky.social · 28/04/2025
Super excited to share a new preprint from our lab on design of small-molecule binding proteins using neural networks! The paper has a bit of everything. A new graph neural network, new design algorithms, and experimental validation. www.biorxiv.org/content/10.1... 🧵🧪
biorxiv.org
Zero-shot design of drug-binding proteins via neural selection-expansion
Computational design of molecular recognition remains challenging despite advances in deep learning. The design of proteins that bind to small molecules has been particularly difficult because it requ...
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Anush Chiappino-Pepe @anush-chp.bsky.social · 29/04/2025
I am a bit traumatized. I first read „mass deportation“ 🫣
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Kaia Mattioli @kaiamattioli.bsky.social · 28/04/2025
i'm just a senior postdoc, standing in front of a career that i have worked really hard for, asking higher education in the united states to not completely implode in front of my eyes before i even get a chance to say the words 'my lab studies'
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 26/04/2025
Huge opportunity for postdocs gearing up for an academic job search, hosted by @stanford-chemh.bsky.social @berkeleymcb.bsky.social and UCSF!
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Hadley Sikes @sikeslab.bsky.social · 23/04/2025
This is very sad and wasteful. A lot of the value comes from longitudinal data. Stopping early wastes all of the startup costs. NIH cancels its first and largest study centered on women | Science | AAAS www.science.org/content/arti...
science.org
NIH cancels its first and largest study centered on women
The Women’s Health Initiative has produced numerous influential findings
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Jeremy Berg @jeremymberg.bsky.social · 23/04/2025
AAU updates their excellent explainer about indirect costs to cover the current attacks... www.youtube.com/watch?v=NtqK... 1/2
youtube.com
Facilities and Administrative (F&A) Costs Explainer
YouTube video by Association of American Universities
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Nihil Dev 🇩🇰🇬🇱🇺🇦🇨🇦🇵🇸 @nihildev.bsky.social · 21/04/2025
Ever wonder how many lives have been saved by NIH-funded research - including your own? Enter any medical condition and instantly see how your tax dollars transformed science into survival. www.ourhealthroi.com
ourhealthroi.com
Our Health ROI
Explore how your tax dollars fund life‑saving medical research.
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Taylor priest @taylorpriest.bsky.social · 22/04/2025
A huge, new resource for plasmid research - PlasmidScope is a database of 852,000 #plasmid sequences with a rich set of annotations, automated online analysis and interactive visualisation academic.oup.com/nar/article/...
academic.oup.com
PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools
Abstract. Plasmids are extrachromosomal genetic molecules that replicate independent of chromosomes in bacteria, archaea, and eukaryotic organisms. They co
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Prof Peter Hotez MD PhD DSc(hon) @peterhotezmdphd.bsky.social · 19/04/2025
From the Editor-in-Chief of @plosbiology.org journals.plos.org/plosbiology/...
journals.plos.org
Vaccines work… and do not cause autism
Vaccines have saved millions of lives, yet their importance and safety is repeatedly in question. W e cannot let disinformation campaigns get in the way of global public health – it is not time to def...
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Tamanash Bhattacharya @tamanash.bsky.social · 18/04/2025
Our study exploring the evolutionary mechanism of alphavirus opal codon retention is now online! www.science.org/doi/10.1126/...
science.org
A conserved opal termination codon optimizes a temperature-dependent trade-off between protein production and processing in alphaviruses
Alphaviruses optimize viral polymerase production and polyprotein processing at distinct temperatures via a premature stop codon.
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Tae Seok Moon @taeseokmoon.bsky.social · 17/04/2025
#SynBYSS seminar with Prof. Maciek Antoniewicz at the University of Michigan & Dr. Anush Chiappino-Pepe at Harvard Medical School @umich.edu @anush-chp.bsky.social @harvardmed.bsky.social The video link is below: www.youtube.com/watch?v=Qu2P...
youtube.com
SynBYSS with Prof Maciek Antoniewicz at U. of Michigan & Dr Anush Chiappino-Pepe at Harvard Medical
YouTube video by TAESEOK Moon
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Tae Seok Moon @taeseokmoon.bsky.social · 16/04/2025
Glad to share my personalized link "Be a GEM: Biocontained, environmentally applied, genetically engineered microbes" authors.elsevier.com/a/1kxe%7E,3s... Published in Advanced Drug Delivery Reviews Thank Nathan Crook & Juliane Nguyen for the invitation! @elsevierconnect.bsky.social
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Tae Seok Moon @taeseokmoon.bsky.social · 16/04/2025
#SynBYSS Thur 10 am USA CT 159th, Apr 17: Prof Maciek Antoniewicz at U Michigan & Dr Anush Chiappino-Pepe at Harvard Med @anush-chp.bsky.social 160th, Apr 24: Prof Kelvin Lee at U Delaware & Dr Haosheng Shen at Natl U. Singapore Zoom link for the general audience: us02web.zoom.us/j/88380504839
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ᐯIᑕTOᖇ ᑎIᘔET, ᗰᗪ @nizet.bsky.social · 14/04/2025
PRETTY AWESOME Sidor et al. PNAS take a single enzyme from a marine sponge and express it in E. coli, conferring the ability to self-assemble bioglass from silica precursors present in ocean water End result? Living, light-focusing microlenses that persist for months Cheap, durable photonics
pnas.org
Engineered bacteria that self-assemble bioglass polysilicate coatings display enhanced light focusing | PNAS
Cutting-edge photonic devices frequently rely on microparticle components to focus and manipulate light. Conventional methods used to produce these...
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Neil Dalvie @kindofabigneil.bsky.social · 14/04/2025
🧬 🦠 Synthetic biologist: We engineered ocean bacteria to enhance production of siderophores 🪨 🧪 Geochemist: We observed iron solubilization orthogonal to silica passivation 🔁🚰 Process engineer: We showed that wild microbes will not accelerate rock weathering - they simply don't need that much iron
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Neil Dalvie @kindofabigneil.bsky.social · 14/04/2025
Our work on biological rock weathering for CO2 sequestration is online as a pre-print: www.biorxiv.org/content/10.1... I am new to Bluesky - check out our paper and lets exchange follows if you are one of the following!
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Itai Yanai @itaiyanai.bsky.social · 11/04/2025
Is the genome just a bag of genes? A new paper in Science now reports that for two thirds of an organisms' genes the position along the chromosome is actually very tightly constrained! Amazing work from my favorite night scientist Martin Lercher and his team! www.science.org/doi/10.1126/...
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Anush Chiappino-Pepe @anush-chp.bsky.social · 11/04/2025
Thankful that I could share my work on AI, New Amino Acids, and the Future of Bioproduction today at the Wyss Retreat. I look forward to continuing to collaborate with this multidisciplinary, creative community. Together, we can create a more sustainable future with enhanced enzymes! #WyssRetreat25
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Nicolas Cornelissen @nicocorn.bsky.social · 09/04/2025
With chimeric cofactors, we can turn methyltransferases into prenyltransferases. Methyltransferases even prefer AdoPrenyl!Thanks to co-first author Arne and the team led by Andrea @rentmeisterlab.bsky.social #ChemSky #ChemBio Read the full story in CHEM www.cell.com/chem/fulltex...
A chimeric cofactor is used to turn methyltransferases into prenyltransferases.
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Anush Chiappino-Pepe @anush-chp.bsky.social · 09/04/2025
So excited to give a talk at the SynBYSS series by @taeseokmoon.bsky.social !! Thank you so much for organizing and I hope many of you can join and we can discuss :)
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MIT Jameel Clinic @mitjameelclinic.bsky.social · 08/04/2025
Nobel Prize winners, robot dogs, and historic landmarks — our AI & Health Summer Bootcamp has it all, and there are only 10 days left to apply! The FINAL deadline is April 18! #EduSky #ScienceSky 🌟Learn more: jclinic.mit.edu/events/high-... Watch: www.youtube.com/watch?v=_iR5...
youtube.com
MIT Jameel Clinic AI & Health Summer High School Bootcamp
YouTube video by MIT Jameel Clinic - AI & Health
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Lior Pachter @lpachter.bsky.social · 06/04/2025
I made a complete and comprehensive starter pack for computational biology: Follow @lh3lh3.bsky.social.
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Ruth Mottram @ruthmottram.eurosky.social · 05/04/2025
A good news item about #HyperemesisGravidarum, and a perfect demonstration of why diversity and #WomenInSTEM are important www.aaas.org/news/genetic...
aaas.org
Geneticist Wins Women’s Health Prize for Pioneering Discoveries About Severe Morning Sickness | American Association for the Advancement of Science (AAAS)
Marlena Fejzo’s groundbreaking work implicates the hormone GDF15 as a key player in this understudied disorder.
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Nikolai Slavov @slavov-n.bsky.social · 04/04/2025
Timescales in Cell Biology
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MIT Jameel Clinic @mitjameelclinic.bsky.social · 03/04/2025
Just 2 weeks left before applications for our AI & Health Summer High School Bootcamp are closed! No coding experience necessary — just a strong curiosity in how AI will transform the future of health! 🍎Apply: jclinic.mit.edu/events/high-...
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Christopher P Jones @cpricejones.bsky.social · 02/04/2025
Excited to share my latest research. In this paper in PNAS, I use #cryoEM and #crystallography to solve multiple new structures of a viral RNA motif that controls frameshifting. #virus #retrovirus #structuralbiology #science #biochemistry www.pnas.org/doi/10.1073/...
pnas.org
Structural switching dynamically controls the doubly pseudoknotted Rous sarcoma virus–programmed ribosomal frameshifting element | PNAS
A hallmark of retrovirus replication is the translation of two different polyproteins from one RNA through programmed –1 frameshifting. This is a m...
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Columbia University @columbiauniversity.bsky.social · 01/04/2025
👏 Congratulations! This year, eight Columbia faculty will be named honorary fellows of the American Association for the Advancement of Science, one of the world's largest scientific societies. news.columbia.edu/news/eight-c...
news.columbia.edu
Eight Columbians Named AAAS Fellows
The American Association for the Advancement of Science honored them for scientific excellence and service to their communities.
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Mark Peifer (He, him) @peiferlabunc.bsky.social · 01/04/2025
@vambros.bsky.social Welcome over here Victor!
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Helmholtz Institute Würzburg @helmholtz-hiri.bsky.social · 01/04/2025
CURIOSITY IS INFECTIOUS 🦠🔬 The @helmholtzhzi.bsky.social is recruiting #PhD students in infection research, with opportunities in the lab of #HIRI director Jörg Vogel. Join the next generation of pioneers and apply by April 20! More information: www.helmholtz-hiri.de/en/jobs-tale...
helmholtz-hiri.de
Working at HIRI
At the HIRI, we do not just value excellent research. Short distances, an open door policy, and a good working atmosphere—this is what distinguishes us from others. Have a look at our current job post...
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Tae Seok Moon @taeseokmoon.bsky.social · 31/03/2025
2025 Cold Spring Harbor Laboratory Course in Synthetic Biology - apply! Deadline: April 14, 2025 Financial Aid: Stipend awards are available. Notifications: Applicants will be notified by May 15, 2025. meetings.cshl.edu/courses.aspx...
meetings.cshl.edu
Synthetic Biology
Cold Spring Harbor Laboratory Meetings & Courses -- a private, non-profit institution with research programs in cancer, neuroscience, plant biology, genomics, bioinformatics.
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MIT Koch Institute @mitkochinstitute.bsky.social · 31/03/2025
How is AI transforming health care? Join @ReginaBarzilay in conversation with @ariannahuff at @museumofscience on April 10 at 7 PM as they explore AI’s impact across industries to improve health outcomes. Register now: www.mos.org/events/eveni...
Side by side photos of Arianna Huffington and Regina Barzilay
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Jordan Meier @doc-jlmeier.bsky.social · 30/03/2025
My favorite science is the kind that makes you says, "Man, I wish I thought of that!" This is such a paper. Mass action turns an eraser into a pen. HDACs are metabolite-dependent histone acyltransferases. @dremilygoldberg.bsky.social @gburslem.bsky.social www.nature.com/articles/s41...
nature.com
Reversible histone deacetylase activity catalyzes lysine acylation - Nature Chemical Biology
Tsusaka et al. discover that histone deacetylases, which are well known to remove protein modifications, such as lysine acetylation and β-hydroxybutyrylation, can also reverse their chemical activity ...
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Democracy Action Network @democracyactionnet.bsky.social · 29/03/2025
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Anush Chiappino-Pepe @anush-chp.bsky.social · 30/03/2025
Excited to attend the Biological Systems Science Division (BSSD) 2025 Annual Principal Investigator (PI) Meeting in Washington DC: www.orau.gov/2025bssdpimtg! I will present a poster (#126) tomorrow (Monday, 3/31) evening. I would love to meet you there! See you soon :)
orau.gov
2025 Biological Systems Science Division Principal Investigators’ Meeting
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Paul J. Dauenhauer @pauldauenhauer.bsky.social · 30/03/2025
This is incredible. www.nature.com/articles/s41... @matteomonai.bsky.social
Musical neurodynamics
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