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Aaron Pomerantz

@aaronpomerantz.bsky.social
317 followers 349 following 28 posts

Associate Director, Global Segment Marketing @ Oxford Nanopore Technologies - Microbiology, Infectious Disease, Synthetic Biology. The coolest discoveries are the ones you make. Tweets/views are my own.

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Reposted by Aaron Pomerantz
Steven Robbins @stevenjrobbins.bsky.social · 22/07/2026
It's out! Excited to present the Great Barrier Reef Microbial Genomes Database (GBR-MGD), a comprehensive DB of 1000s of high-quality prokaryote, virus, plasmid, and chromosome-level eukaryote MAGs using Nanopore long reads. Subthreads incoming. Please share widely. 🙂 www.nature.com/articles/s41...
nature.com
The planktonic microbiome of the Great Barrier Reef - Nature
The Great Barrier Reef Microbial Genomes Database compiles prokaryotic, viral and eukaryotic genomes from seawater collected from the Great Barrier Reef, providing a rich resource for the study of mar...
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Oxford Nanopore @nanoporetech.com · 28/05/2026
Join Jim Shaw at #ASMicrobe to uncover how to unlock high-resolution, strain-level microbiome insights. Learn how this is could be crucial to helping deliver more precise diagnostics and treatment in the future. bit.ly/4v4XuKE
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Jim Shaw @jimshaw.bsky.social · 29/05/2026
Excited to speak at ASM Microbe 2026 in the Oxford Nanopore session about new tools for long-read metagenomics + 16S sequencing. If you're attending ASM Microbe June 4-7 in D.C. and want to chat, let me know!
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George Olah @georgeolah.bsky.social · 12/11/2025
Our nature note with @philtorres.bsky.social @aaronpomerantz.bsky.social et al. in @ecol-evol.bsky.social was featured in @science.org #ScienceShots written by @sahasmehra.bsky.social #Cyclosa #decoy #spiders #evolution #Peru #Philippines
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Jen Cross @jencross.bsky.social · 15/11/2025
Congrats @philtorres.bsky.social and @aaronpomerantz.bsky.social on the paper! I look for these decoy spiders whenever I’m in the rainforest and this is the best example I’ve found. #inverts Cuyabeno Reserve, Ecuador 2022
A spider web with a trash line through the middle leading up to a larger, spider-ish looking patch at the top.
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Emmanuele Severi @emmseveri.bsky.social · 02/11/2025
#phagesky #phage #microsky www.biorxiv.org/content/10.1...
biorxiv.org
Rolling out plaque-2-sequence: a single plaque sequencing approach enabling rapid, low-cost sequencing of phages directly from plaques
Rapid, accurate, and scalable sequencing of bacteriophage genomes is critical to advance phage therapy, build phage biobanks and understand phage genomic diversity. Current methods are based on sequen...
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Javier Santoyo @jsantoyo.bsky.social · 18/10/2025
Yeast genomes show how large genomic variations affect trait diversity. #YeastGenomes #GenomicVariations #TraitDiversity #LongReads #Sequencing #Pangenome @nature.com 🧬 🖥️ www.nature.com/articles/d41...
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Oxford Nanopore @nanoporetech.com · 18/09/2025
Introducing our new Microbial Amplicon Barcoding Kit, which enhances microbial community profiling with an information-rich, rapid & accessible protocol for streamlined identification of bacteria, archaea & fungi — in one go. nanoporetech.com/news/oxford-...
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Sullivan Lab at OSU @sullivan-lab.bsky.social · 12/09/2025
🚨 New tool for viral genomics! Meet CLAE: a high-fidelity Nanopore sequencing strategy that pushes accuracy to Q30, boosts throughput >800 Mb/100 pores, and recovers full-length viral genomes from complex samples 🌊🦠 👉 [doi.org/10.1002/advs.202505978] #viromics #nanopore #genomics
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Hugh Cottingham @hughcottingham.bsky.social · 30/07/2025
Pleased to say that our preprint benchmarking Nanopore data for MLST, cgMLST, cgSNP & AMR typing from bacterial isolates is out! TL;DR you can get almost perfect results from 50x depth using live SUP basecalling with a GPU in under 20 hours #microsky#IDsky 🦠🧬🖥️ /1 www.medrxiv.org/content/10.1...
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Jonathan Jacobs @bioinformer.bsky.social · 25/06/2025
🧵🦠🖥️🧬🧪 Please RePost 🙏 We just released reference genomes for another 250 strains to the ATCC Genome Portal (genomes.ATCC.org)! We now have assemblies for _5,750 microbial genomes_ AND all assemblies w/ @nanoporetech.com data will include DNA methylation profiles too (details👇) #genomics 1/
genomes.atcc.org
Home | ATCC Genome Portal
The ATCC Genome Portal is a repository of high-quality, authenticated microbial reference genomes.
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Oxford Nanopore @nanoporetech.com · 23/06/2025
We’re bringing #ASMMicrobe 2025 to you, virtually. Join Robert James, Angela Hickey, and Jose Alexander as they share how real-time, Oxford Nanopore sequencing is transforming microbiology—from single bacterial isolates to the complexities of the microbiome. nanoporetech.com/about/events...
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Jonathan Jacobs @bioinformer.bsky.social · 19/06/2025
Need bacterial DNA methylation data? Well, we’ve been re-basecalling all ONT data for the ATCC Genome Portal to get it. A huge effort, but as of today we have Mthyl data for ~1,500 bacterial strains. Attending #ASMicrobe? happy to chat IRL about it too. i.e. > genomes.atcc.org/genomes/67e8...
genomes.atcc.org
ATCC® 9945a™ | Bacillus paralicheniformis | ATCC Genome Portal
Bacillus paralicheniformis is a strain of bacteria in the Bacillus genus. This genome was published to the ATCC Genome Portal on 2022-04-02
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Josh Quick @scalene.bsky.social · 19/06/2025
Francisella tularensis identified using @articnetwork.bsky.social SMART-9N metagenomics and @nanoporetech.com sequencing. Amazing work!
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Emma Waters @emmabeansworth.bsky.social · 23/06/2025
What a great key note presentation from @mariechattaway.bsky.social looking at the evolution of #AMR in #Salmonella over the lifetime of #publichealth surveillance. If you enjoyed Marie's talk, then there are many posters featuring work from others @ukhsa.bsky.social's surveillance team here at #I3S
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Reposted by Aaron Pomerantz
Samuel Lampa @smllmp.bsky.social · 19/06/2025
Very cool!
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Aaron Pomerantz @aaronpomerantz.bsky.social · 16/06/2025
Each year at @asm.org I'm blown away by the growing amount of presentations and posters leveraging @nanoporetech.com. This year we identified nearly 100 abstracts, ranging from clinical micro & public health applications to environmental research. See you there! nanoporetech.com/about/events...
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Heng Li @lh3lh3.bsky.social · 28/05/2025
New metagenome assembler for ONT R10 and PacBio HiFi reads, from Jim Shaw. See Jim's thread for details
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Steven Robbins @stevenjrobbins.bsky.social · 25/05/2025
Short-read metagenomic sequencing cannot recover genomes from many abundant marine prokaryotes due to high strain heterogeneity and platform-inherent GC bias (likely viruses, too), but Nanopore long reads can address this. A results thread on our recent preprint 🧵.
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Nick Loman @pathogenomenick.bsky.social · 22/05/2025
Absolutely thrilled to announce the launch of ARTIC2 - a £5.5M 5 year project funded by @wellcometrust.bsky.social to build on the ARTIC approach of low-cost, globally accessible genome sequencing for surveillance of outbreaks, epidemics and endemic diseases: www.birmingham.ac.uk/news/2025/am...
birmingham.ac.uk
Ambitious project to develop low-cost genome sequencing for pathogens known and unknown - University of Birmingham
Project will build on research that helped diagnostic labs to adopt sequencing capacity for COVID-19 and permit characterisation of future infectious threats
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Aaron Pomerantz @aaronpomerantz.bsky.social · 24/05/2025
Every year there so many amazing @nanoporetech.com updates at London Calling. Here I'll focus on some of my top picks for Microbiology & Infectious Disease 🦠 First, we saw how the technology continued to advance research in 2024 with ~2/3 of ONT publications in micro/infectious #nanoporeconf
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Aaron Pomerantz @aaronpomerantz.bsky.social · 19/05/2025
This is going to be an incredible resource for the microbiology community!
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bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 25/04/2025
High-quality metagenome assembly from nanopore reads with nanoMDBG www.biorxiv.org/content/10.1101/202…
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Sean McKenzie @dorylophile.bsky.social · 25/04/2025
It's been a good month for Nanopore assembly preprints! This time metagenomic assembly with nanoMDBG: hundreds of high-quality MAGs from high-complexity communities
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Jonathan Jacobs @bioinformer.bsky.social · 19/04/2025
One thing I’m looking forward to this year: Updating the ATCC Genome Portal to be able to deliver the DNA methylation data we have on over 5,000 bacteria and fungi… We just finished rebasecalling all of the raw @nanoporetech.com data we’ve produced since 2019 with the latest version of Dorado.🙃
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Hasindu Gamaarachchi @hasindu2008.bsky.social · 19/04/2025
This new Hifiasm --ont option is amazing. It worked like a charm for us in the nanopore adaptive sampling based assembly paradigm we introduced in a preprint recently. www.biorxiv.org/content/10.1...
biorxiv.org
Adaptively integrated sequencing and assembly of near-complete genomes
Recent advances in long-read sequencing (LRS) and assembly algorithms have made it possible to create highly complete genome assemblies for humans, animals, plants and other eukaryotes. However, there...
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Heng Li @lh3lh3.bsky.social · 18/04/2025
Preprint on hifiasm Nanopore-only assembly. Led by Haoyu Cheng: www.biorxiv.org/content/10.1...
biorxiv.org
Efficient near telomere-to-telomere assembly of Nanopore Simplex reads
Telomere-to-telomere (T2T) assembly is the ultimate goal for de novo genome assembly. Existing algorithms capable of near T2T assembly all require Oxford Nanopore Technologies (ONT) ultra-long reads w...
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Andrew Rambaut (🐏🎀) @arambaut.bsky.social · 03/02/2025
First genome sequence from the Ugandan Ebolavirus outbreak with analysis: virological.org/t/990 and first filovirus genome submitted to Pathoplexus database: pathoplexus.org/seq/PP_0011C.... Great (and rapid) work from the National Health Laboratory, UVRI and partners.
virological.org
Near Real-Time Genomic Characterization of the 2025 Sudan Ebolavirus Outbreak in Uganda’s Index Case: Insights into Evolutionary Origins
Introduction Case History: On January 30, 2025, the Ministry of Health declared an outbreak of Sudan Ebola Virus (SUDV) Disease in Kampala, Uganda, following the death of a healthcare worker at Mula...
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Sean McKenzie @dorylophile.bsky.social · 19/12/2024
Check out our new Apps Note on metagenomic assembly of the Zymo fecal reference with nanopore sequencing and metaMDBG. Almost 200 Gb of metagenomic sequence data from a single PromethION flowcell, yeilding hundreds of high-quality metagenome assembled genomes: nanoporetech.com/resource-cen...
nanoporetech.com
Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome | Oxford Nanopore Technologies
In this application note, we demonstrate the capabilities of Oxford Nanopore metagenomics by sequencing and analysing the well-characterised ZymoBIOMICS Fecal Reference.
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Aaron Pomerantz @aaronpomerantz.bsky.social · 15/01/2025
There were remarkable updates presented at #PAG32 on incredibly accurate @nanoporetech.com sequencing for applications ranging from telomere-to-telomere plant & animal genome assemblies, to amplicon sequencing at massive scale. Here are some highlights in case you missed them (thread)
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Charley Yen, PhD @eugeniecyen.bsky.social · 14/01/2025
Excited to present at the #PAG2025 @nanoporetech.com workshop tomorrow! Come along to hear more about how we incorporate ONT methylation sequencing for sea turtle conservation! 🐢🧬
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Aaron Pomerantz @aaronpomerantz.bsky.social · 15/01/2025
bsky.app/start/did:pl...
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Tina Han @tingfordha.bsky.social · 05/01/2025
Great to see the utilization of Twist Mouse Exome Panel in Iso-seq for improving the number of exons detected! “We show here, using ONT data, that fast and accurate quantification of long-read data is possible and that it is improved by exome capture.” @twistbio.bsky.social
Exome capture improves long-read RNA-seq
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Aaron Pomerantz @aaronpomerantz.bsky.social · 04/01/2025
Who’s all going to #PAG2025? Be sure to make our @nanoporetech.com workshop, where you’ll hear how real-time, scalable, highly accurate sequencing is transforming: 🦋 Biodiversity research at scale 🐢 Endangered species conservation 🦠 Pathogen surveillance 🌱 T2T plant assemblies bit.ly/3DqFncM
bit.ly
Oxford Nanopore at PAG 2025
Visit Oxford Nanopore Technologies at PAG 2025
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ᐯIᑕTOᖇ ᑎIᘔET, ᗰᗪ @nizet.bsky.social · 30/11/2024
Impressive work from lab of @evamarianovoa.bsky.social Scalable and reproducible workflow of native RNA nanopore sequencing + NanoConsensus analysis finds significant rRNA modification changes in response to antibiotic stress—genuinely novel concept for AMR research www.nature.com/articles/s41...
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