What's Changed Experimental methylation detection support by specifying the --mod 5mCG_5hmCG@v3 option. Works with HAC and SUP v5.0.0 DNA GPU basecalling models Transformer (SUP >= v5.0.0) model o...

Nature Biotechnology - A long-read metagenome assembly method recovers circular and complete genomes better than existing tools.

What's Changed slow5tools skim supports the new auxiliary field open_pore_level introduced in latest ONT pod5 slow5tools degrade has new profiles added (by @sashajenner and @hiruna72) and are docu...

What's Changed Support for RNA models >= v5.1.0 --flash yes|no option that enables flash attention for transformer models (SUP >= v5.0.0). This is "no" by default to maximise compatibility across ...

A Julia wrapper for slow5lib

Long-read sequencing enables high-quality genome assemblies, but challenges remain. Here, the authors introduce Cornetto, a method that improves assembly quality, enables genome sequencing from saliva...

Open Data from Genomic Technologies Group

What's Changed updated slow5lib to 1.3 to support ex-zd compressed blow5 fix unnecessary tab being printed in resquiggle tsv output [see #180 ] improvements to error/warning messages f5c now suppo...

adaptive genome assembly using nanopore sequencing - hasindu2008/cornetto

A simplified version of Dorado built on top of S/BLOW5 format. - BonsonW/slorado

AbstractSummary. Nanopore sequencers allow sequencing data to be accessed in real-time. This allows live analysis to be performed, while the sequencing is

A bioinformatics tool for viewing and calculating base modification frequencies from BAM files - warp9seq/minimod

What's Changed New paused end reason and test updates Full Changelog: v0.3.0...v0.4.0

Motivation Long-read sequencing enables complete bacterial genome assemblies, but individual assemblers are imperfect and often produce sequence-level and structural errors. Consensus assembly using T...

UNSW is seeking an enthusiastic researcher for an exciting new role involving dynamic collaboration within a multidisciplinary team of immunologists, RNA biologists and bioinformaticians. Sponsorship ...

AbstractSummary. Nanopore sequencers allow sequencing data to be accessed in real-time. This allows live analysis to be performed, while the sequencing is

Recent advances in long-read sequencing (LRS) and assembly algorithms have made it possible to create highly complete genome assemblies for humans, animals, plants and other eukaryotes. However, there...

A simplified version of Dorado built on top of S/BLOW5 format. - BonsonW/slorado

Researchers use Pawsey's Setonix supercomputer to develop Slorado, the first open-source software for nanopore sequencing on AMD GPUs, expanding bioinformatics capabilities worldwide. Register for the...