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Tina Han

@tingfordha.bsky.social
876 followers 778 following 31 posts

Genomics scientist by day, amateur potter and yogi by night, who loves culture and nature. Ex-MPI_MolGen Posts are my own; Repost ≠ endorsements. instagram/wawapot

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Reposted by Tina Han
Prof Sam Illingworth @samillingworth.com · 04/10/2026
🧬 A urine test catches bladder cancer early A Stanford team built a urine test that caught early bladder cancer 95% of the time, and stayed accurate on healthy urine 90% of the time, beating an older DNA-based test. 🔗 doi.org/10.1038/s41591-026-04673-3 #cancer #genetics #research #medicine 🧪
doi.org
Urine cell-free RNA for bladder cancer detection and treatment response prediction - Nature Medicine
Applied to samples from more than 600 patients and controls, urinary cell-free RNA profiling with uRARE-seq demonstrated high sensitivity in detecting bladder cancer, and correlated with treatment res...
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Reposted by Tina Han
Twist Bioscience @twistbioscience.com · 19/08/2026
Read the technical paper “Autonomous de novo protein binder design with Claude”👇
www-cdn.anthropic.com
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Twist Bioscience @twistbioscience.com · 19/08/2026
Claude + protein design. 🤩 Common & novel targets were selected to test Claude’s capabilities & out of the 15 selected targets, Claude successfully designed binders against 14 of them! 🎉 We are thrilled to have performed the wet lab validation for this research! (🔗 below) @twistbioscience.com
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Twist Bioscience @twistbioscience.com · 19/08/2026
Check out all the details on Anthropic’s blog “How Claude is accelerating protein design and analytical chemistry”👇
anthropic.com
How Claude is accelerating protein design and analytical chemistry
In this post, we share two results that show how Claude can help life scientists increase the pace of their research. In the first, we tested Claude’s ability to design protein binders from scratch, a...
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Reposted by Tina Han
Twist Bioscience @twistbioscience.com · 21/07/2026
MRD Express: Rapid, scalable, and high-performance custom target enrichment for minimal residual disease monitoring: aacrjournals.org/cancerres/ar...
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Twist Bioscience @twistbioscience.com · 21/07/2026
We are thrilled to see our MRD Express included in the blog “Democratizing MRD” found here: coregenomics.substack.com/p/democratiz... Learn more about Twist MRD Express: www.twistbioscience.com/next-generat...
coregenomics.substack.com
Democratizing MRD
An overview of some interesting enabling technologies
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Twist Bioscience @twistbioscience.com · 21/07/2026
👀 MRD & cancer researchers: This substack from James Hadfield focuses on “exploring the enabling technologies that could fundamentally democratize MRD testing, moving it out of large centralised labs & into community oncology centres near patients.”
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Tina Han @tingfordha.bsky.social · 09/06/2026
Hybrid untargeted short-read and targeted long-read RNA sequencing facilitates genotype-phenotype associations at single-cell resolution @fgcz-en.bsky.social @pacbio.bsky.social @twistbioscience.com
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Tina Han @tingfordha.bsky.social · 13/05/2026
@bloodpac.bsky.social @theaacr.bsky.social
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Reposted by Tina Han
BLOODPAC @bloodpac.bsky.social · 15/04/2026
Join the @theaacr.bsky.social and @bloodpac.bsky.social at #AACR26 for 𝘾𝙤𝙣𝙩𝙚𝙭𝙩𝙪𝙖𝙡 𝘾𝙝𝙖𝙡𝙡𝙚𝙣𝙜𝙚𝙨 𝙞𝙣 𝙄𝙣𝙩𝙚𝙧𝙥𝙧𝙚𝙩𝙞𝙣𝙜 𝙋𝙚𝙧𝙛𝙤𝙧𝙢𝙖𝙣𝙘𝙚 𝙤𝙛 𝘽𝙡𝙤𝙤𝙙-𝘽𝙖𝙨𝙚𝙙 𝙀𝙖𝙧𝙡𝙮 𝘾𝙖𝙣𝙘𝙚𝙧 𝘿𝙚𝙩𝙚𝙘𝙩𝙞𝙤𝙣 𝙏𝙚𝙨𝙩𝙨: 𝘼 𝘽𝙇𝙊𝙊𝘿𝙋𝘼𝘾 𝙋𝙚𝙧𝙨𝙥𝙚𝙘𝙩𝙞𝙫𝙚 🔗 www.abstractsonline.com/pp8/#!/21436...
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BLOODPAC @bloodpac.bsky.social · 29/01/2026
🎉 Welcome to BLOODPAC, @Twist Bioscience! 🧬 Twist Bioscience is a biotech company that develops & manufactures synthetic DNA using a silicon-based platform. To learn more about Twist Bioscience, visit: 👉 www.twistbioscience.com
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Twist Bioscience @twistbioscience.com · 21/01/2026
How Twist DNA is supporting HIV research! Melissa Smith, & team, including our own @tingfordha.bsky.social develop a long-read pipeline to define HIV reservoirs in this new paper: journals.plos.org/plospathogen...
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Twist Bioscience @twistbioscience.com · 29/12/2025
✨6 ✨ of our favorite groundbreaking publications from 2025, as curated by Twisters! Check them out below…
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Twist Bioscience @twistbioscience.com · 29/12/2025
François Boemer & team demonstrate the importance of integrating biochemical & genomic methods in NBS programs as they report the results of the first 18 months of the ongoing observational study BabyDetect. Read “Population-based, first-tier genomic newborn screening in the maternity ward” here:
nature.com
Population-based, first-tier genomic newborn screening in the maternity ward - Nature Medicine
The BabyDetect project offered expanded newborn genomic screening covering more than 400 genes to 4,260 families, leading to 71 clinical diagnoses.
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Tina Han @tingfordha.bsky.social · 06/10/2025
Look forward to seeing everyone at #ASHG25! Our poster will showcase how we can bring exome sequencing to the next level - Board 8011F: Utilization of Twist CNV Backbone Spike-in Panel with exome for replacing cytogenetic arrays Stop by @twistbioscience.com booth #559 for more info
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Tina Han @tingfordha.bsky.social · 12/09/2025
Couldn’t be prouder of this collaboration on targeted long-read sequencing for pharmacogenomics! #PGx
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Tim Coorens @timcoorens.bsky.social · 03/07/2025
The cells in our bodies constantly acquire mutations. But what are the patterns of mutations across tissues? How do mutations in normal cells lead to cancer and disease? These are questions we will tackle within the Somatic Mosaicism across Human Tissues (SMaHT) Network, now described in @nature.com
nature.com
The Somatic Mosaicism across Human Tissues Network - Nature
The Somatic Mosaicism across Human Tissues Network aims to create a reference catalogue of somatic mosaicism across different tissues and cells within individuals.
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Xavier Roca-Rada, PhD @xavierrocarada.bsky.social · 03/07/2025
Excited to share our new paper! We benchmarked the Twist Ancient DNA kit for in-solution enrichment. It’s cost-effective, robust, and shows no allelic bias, even when pooling libraries! @acadresearch.bsky.social @dnatimetravel.bsky.social @twistbioscience.com doi.org/10.1186/s130...
doi.org
Optimized in-solution enrichment of over a million ancient human SNPs - Genome Biology
Background In-solution hybridization enrichment of genetic markers is a method of choice in paleogenomic studies, where the DNA of interest is generally heavily fragmented and contaminated with enviro...
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Javier Santoyo @jsantoyo.bsky.social · 24/06/2025
Comparison of spatial transcriptomics technologies using tumor cryosections. #SpatialTranscriptomics #TechnologiesBenchmarking #Genomics #Bioinformatics #GenomeBiology 🧬 🖥️ genomebiology.biomedcentral.com/articles/10....
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Heng Li @lh3lh3.bsky.social · 17/06/2025
Preprint on "Improving spliced alignment by modeling splice sites with deep learning". It describes minisplice for modeling splice signals. Minimap2 and miniprot now optionally use the predicted scores to improve spliced alignment. arxiv.org/abs/2506.12986
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Twist Bioscience @twistbioscience.com · 16/05/2025
from our own @tingfordha.bsky.social — Development and validation of HIV SMRTcap for the characterization of HIV-1 reservoirs across tissues and subtypes: www.biorxiv.org/content/10.1...
biorxiv.org
Development and validation of HIV SMRTcap for the characterization of HIV-1 reservoirs across tissues and subtypes
Human Immunodeficiency Virus type 1 (HIV-1) is responsible for the global HIV/AIDS epidemic and the establishment of an integrated HIV-1 reservoir remains the primary obstacle to cure. Upon therapy in...
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franmartinezgr.bsky.social @franmartinezgr.bsky.social · 16/04/2025
Systematic identification of disease-causing promoter and untranslated region variants in 8040 undiagnosed individuals with rare disease #RareDisease #Genetics genomemedicine.biomedcentral.com/articles/10....
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Nature Reviews Genetics @natrevgenet.nature.com · 18/04/2025
FYI: New online! Transcriptomics in the era of long-read sequencing
nature.com
Transcriptomics in the era of long-read sequencing
Nature Reviews Genetics, Published online: 28 March 2025; doi:10.1038/s41576-025-00828-zAdvances in long-read sequencing are driving the implementation of these technologies for transcriptome profiling. The authors provide a comprehensive guide to long-read RNA sequencing, including experimental and computational tools, current applications, challenges and opportunities.
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Tina Han @tingfordha.bsky.social · 26/04/2025
I’m heading to #AACR25 in Chicago! Please look out for me if you'd like to speak about anything from liquid biopsy to CGP to WES to WGS to long-read sequencing! Here is my must-see list of posters -
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Genome in a Bottle Consortium @genomeinabottle.bsky.social · 20/12/2024
Our first curated draft somatic structural variant benchmark for the new GIAB PDAC tumor cell line HG008-T is at ftp-trace.ncbi.nlm.nih.gov/ReferenceSam..., based on extensive short+long read sequencing data described in doi.org/10.1101/2024.... Feedback to improve future versions is very welcome!
ftp-trace.ncbi.nlm.nih.gov
Index of /ReferenceSamples/giab/data_somatic/HG008/Liss_lab/analysis/NIST_HG008-T_somatic-stvar_DraftBenchmark_V0.1-20241219
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Tina Han @tingfordha.bsky.social · 28/02/2025
Today is Rare Disease Day, we’re thankful that researchers and clinicians have been utilizing @twistbioscience.com products for solving these puzzles. Here are some highlights:
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Stephen Turner @stephenturner.us · 24/02/2025
nf-core/variantbenchmarking v1.0.0: Nextflow pipeline to evaluate and validate the accuracy of variant calling methods github.com/nf-core/variantbenchmark… 🧬🖥️🧪
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bioRxivpreprint @biorxivpreprint.bsky.social · 23/02/2025
Lancet2: Improved and accelerated somatic variant calling with joint multi-sample local assembly graph www.biorxiv.org/content/10.1101/202…
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PacBio @pacbio.bsky.social · 20/02/2025
Unlock targeted single-cell sequencing with Twist Exome Enrichment Kits, powered by #PacBio Kinnex. This robust workflow enriches spliced mRNA from single-nuclei libraries for high-res transcript discovery. Check out our tech note & learn more at our #AGBT Lanai Suite 289! bit.ly/3QqD6l5
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Miss Salmonella @misssalmonella.bsky.social · 23/12/2024
ONT vs Illumina approach for diagnosis and surveillance of #viruses genomemedicine.biomedcentral.com/articles/10....
genomemedicine.biomedcentral.com
Evaluating metagenomics and targeted approaches for diagnosis and surveillance of viruses - Genome Medicine
Background Metagenomics is a powerful approach for the detection of unknown and novel pathogens. Workflows based on Illumina short-read sequencing are becoming established in diagnostic laboratories. ...
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Tina Han @tingfordha.bsky.social · 22/02/2025
“Comprehensive benchmarking of methods for mutation calling in circulating tumor DNA” with 2000x WES or 150x WGS. From the lab of @skandlab.bsky.social at Genome Institute of Singapore www.biorxiv.org/content/10.1...
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Twist Bioscience @twistbioscience.com · 20/02/2025
🏝️ #AGBT we are excited to see YOU at the biggest genomics meeting in the 🌍 Ready to accelerate your next breakthrough? Book a 1:1 with to explore how Twist's cutting-edge NGS solutions can advance your research: calendly.com/twist_events... #AGBTGM #AGBT25 @twistbioscience.com
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Tina Han @tingfordha.bsky.social · 21/02/2025
Use Twist Exome for full-length isoform sequencing from 10x or Parse and in conjunction with PacBio's #Kinnex? Happy to chat about this and other long-read applications at #AGBTGM! TechNote: www.pacb.com/wp-content/u... @twistbioscience.com @10xgenomics.bsky.social @pacbio.bsky.social
pacb.com
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Ming Tommy Tang @tommytang.bsky.social · 30/01/2025
1/ 🧵 Tackling Ambient RNA in Single-Cell RNA-seq Data Ambient RNA contamination can skew single-cell RNA sequencing (scRNA-seq) results. Let's explore its impact and solutions.
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Ming Tommy Tang @tommytang.bsky.social · 30/01/2025
Benchmarking of automated cancer cell annotation methods for scRNA-seq data reveals Consensus annotation as the preferred method www.biorxiv.org/content/10....
biorxiv.org
Benchmarking of automated cancer cell annotation methods for scRNA-seq data reveals Consensus annotation as the preferred method
Targeted cancer therapies have shown therapeutic advantages due to tumor-specific drug activity. Single-cell RNA-sequencing has been widely used in cancer studies to define different cellular identities. However, accurate identification of tumor vs other normal cells is essential to define novel tumor-specific targets. Recent methods have been developed to perform the task of tumor cell annotation, which can be divided into two categories: CNV-based methods, which use transcriptome measurements to infer copy number variations and identify cells with alterations as tumor, and Reference-based methods which train a classifier using previously annotated tumor data and use it to annotate new datasets. We benchmarked the state-of-the-art method of each category, SCEVAN and scATOMIC, respectively, together with Consensus annotation method where a cell is considered tumor if both methods agree on that. Across 20 cancer datasets spanning 9 cancer types with a total of 379 samples, the Consensus
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Ewan Birney @ewanbirney.bsky.social · 03/01/2025
Some thoughts about what I am looking forward this year from my vantage point of computational molecular biology. One mega-trend for me; we will definitely see more AI methods of all sorts emerge.
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Studio Olafur Eliasson @olafureliasson.net · 15/01/2025
In this article, Olafur discusses his retrospective exhibition 'Your Curious Journey' at Auckland Art Gallery Toi o Tāmaki, and how art and culture come together. www.rnz.co.nz/news/nationa...
rnz.co.nz
Artist Olafur Eliasson: Culture is 'a messy, chaotic, wild, system'
Icelandic-Danish artist Olafur Eliasson describes his work as using "the medium of people".
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Tube Mapper- Luke Agbaimoni @tubemapper.bsky.social · 14/01/2025
So here are the other London Underground stations which open both doors. Barking was definately the hardest to capture. You have to be very lucky with the timing of the passing train. 1. Stratford 2. Morden 3. Canary Wharf DLR 4. Barking
Stratford London Underground station Morden Underground Canary wharf Docklands Light Railway station Barking station
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Stephen Turner @stephenturner.us · 09/01/2025
Review: The therapeutic potential of circular RNAs www.nature.com/articles/s41576-024-… (read free: rdcu.be/d5Kfg) 🧬🖥️🧪
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Stephen Turner @stephenturner.us · 10/01/2025
RNA-SeqEZPZ: A Point-and-Click Pipeline for Comprehensive Transcriptomics Analysis with Interactive Visualizations pubmed.ncbi.nlm.nih.gov/39763815 🧬🖥️🧪 nextflow github.com/yzhang18/RNA-SeqEZPZ-NF
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Tina Han @tingfordha.bsky.social · 05/01/2025
Another great utilization of Twist Panel to reduce the sequencing burden by demonstrating the compatibility of sciMETv3 with capture techniques to enrich regulatory regions! More info: www.twistbioscience.com/products/ngs... @twistbio.bsky.social
twistbioscience.com
Twist Human Methylome Panel | Twist Bioscience
Discovery in Methylation Profiling
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Tina Han @tingfordha.bsky.social · 05/01/2025
Great to see the utilization of Twist Mouse Exome Panel in Iso-seq for improving the number of exons detected! “We show here, using ONT data, that fast and accurate quantification of long-read data is possible and that it is improved by exome capture.” @twistbio.bsky.social
Exome capture improves long-read RNA-seq
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Tina Han @tingfordha.bsky.social · 26/12/2024
Great to see the gRNAs were synthesized as pooled single-stranded oligonucleotides by Twist Bioscience! @twistbio.bsky.social
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Neville Sanjana @nevillesanjana.bsky.social · 26/12/2024
🎇🎄Some holiday reading: Overdue TWEETORIAL on the latest preprint from our lab 🎇🎄 In this work, superstar postdoc @xinhexue.bsky.social combined 2 kinds of pooled CRISPR screens to pinpoint noncoding regulatory elements and the transcription factors that activate these elements.
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Tina Han @tingfordha.bsky.social · 23/12/2024
Thanks for highlighting Twist’s contribution to GREGoR Research Consortium on targeted long-read sequencing to make this technology more scalable and accessible! @twistbio.bsky.social
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Tina Han @tingfordha.bsky.social · 04/12/2024
Thank you @sedlazeck.bsky.social, Luis Paulin, and all the participants for this informative course. The format was very interactive, with lots of hands on exercises. Highly recommended for whoever is doing short-read and long-read sequencing!
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Leopold Parts @leopoldparts.bsky.social · 02/12/2024
Does my mutation have the same impact as yours? Population genetics 🤠 🥸 🤓 🤡 meets single cell CRISPRi ⚡ ! www.biorxiv.org/content/10.1... Led by Claudia Feng, Oliver Stegle, Britta Velten, @sangerinstitute.bsky.social .
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Chaoran Chen @chaoranchen.de · 25/11/2024
Our new GenSpectrum.org dashboard has finally launched! Using Influenza H5N1, RSV and SARS-CoV-2 data from INSDC and West Nile virus data from @pathoplexus.org, it enables fast and interactive analyses of genome sequencing data similar to CoV-Spectrum. 1/5
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Stephen Turner @stephenturner.us · 22/11/2024
Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling www.nature.com/articles/s41587-024-… 🧬🖥️🧪 gitlab.com/sanjanalab/mps (read free: rdcu.be/d1aiz)
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