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UCSF Bakar Computational Health Sciences Institute

@ucsf-bchsi.bsky.social
279 followers 79 following 31 posts

Building the preeminent foundation of talent and knowledge and bringing together a broad community of innovators to advance computational science in health research, practice, and education in support of improved health for all. bakarinstitute.ucsf.edu

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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 30/09/2026
Big news! Roy Perlis will join UCSF as our new Director! Editor in Chief of @jama.com AI. medschool.ucsf.edu/news/announc... @ucsfmedicine.bsky.social @ucsfhealth.bsky.social
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Computational Precision Health @ucjointcph.bsky.social · 29/09/2026
Considering a PhD in CPH? Our first office hours of the admissions season are today from 4:00 to 5:30pm PT. Bring your questions about applying, faculty mentors, and more! Register here: berkeley.zoom.us/meeting/regi... #UCSF #UCBerkeley #ComputationalHealth #PhDAdmissions #GradSchool
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UCSF Helen Diller Family Comprehensive Cancer Center @ucsfcancer.bsky.social · 08/09/2026
From digital health and drug discovery to imaging, survivorship and epidemiology, nine investigators and teams received awards supporting cancer research projects in the Spring 2026 UCSF Resource Allocation Program cycle. @ucsanfrancisco.bsky.social cancer.ucsf.edu/news/2026/08...
cancer.ucsf.edu
From Digital Health to Drug Discovery: Cancer Projects Funded in RAP Spring 2026 Cycle | UCSF Helen Diller Family Comprehensive Cancer Center
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 28/08/2026
Read Jordan Guillot, B. Miao, A. Suresh, M. Sushil, C. Williams, R. Vashisht, T. Oskotsky, M. Sirota, @atulbutte.bsky.social in @plos.org "Extracting adverse event nature, severity, timelines, interventions from clinical notes CAR-T cell therapy patients using LLM" journals.plos.org/digitalhealt...
journals.plos.org
Extracting adverse event nature, severity, timelines and resulting interventions from clinical notes of patients receiving CAR-T cell therapy using large language models
Author summary Chimeric Antigen Receptor T-cell (CAR‑T) therapy has transformed care for blood cancer but requires careful tracking of adverse events (AEs). We asked whether a large language model cou...
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Pedro Pinheiro-Chagas @pinheirochagas.bsky.social · 03/08/2026
This work also reflects part of the clinical-translational vision for our UCSF NeuroAI Lab and what we're building at the @ucsfmac.bsky.social We are hiring: neuroailab.ucsf.edu/careers/ @ucsf-bchsi.bsky.social @ucjointcph.bsky.social @ucsfci2.bsky.social #Postdoc #DataScience #ClinicalResearch
neuroailab.ucsf.edu
Careers
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 19/05/2026
Check out Ashish Raj et al Nature Aging publication "Predicting categorical and continuous Alzheimer’s disease outcomes from a single MRI scan" Article and UCSF news piece here! www.ucsf.edu/news/2026/05... @ucsfimaging.bsky.social @ucsfmedicine.bsky.social
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 06/05/2026
Watch Marina Sirota @ucsanfrancisco.bsky.social & @gladstoneinst.bsky.social Huang lab weigh in on their Alzheimer's Disease drug discovery research in this PBS documentary on The Resilient Brain (minute 51)! allhealthtv.com/program/the-...
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UCSF Radiation Oncology @ucsfradonc.bsky.social · 02/04/2026
Listen to a recent Podcast ft. @julianhong.bsky.social! Discussing considerations for optimizing care among patients with mental health disorders (MHDs) who are undergoing treatment for cancer via Cancer Network @ucsfcancer.bsky.social @ucsf-bchsi.bsky.social www.cancernetwork.com/view/providi...
cancernetwork.com
Providing Support for Mental Health Disorders Across Cancer Populations | CancerNetwork
Julian Hong, MD, MS, offered strategies for providing mental health services into routine workflows for patients undergoing anti-cancer treatment.
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Gladstone Institutes @gladstoneinst.bsky.social · 24/03/2026
We can read the genome. But we can’t fully understand it—yet. Gladstone scientists, including @vram142.bsky.social and @seth-shipman.bsky.social are using AI and experimental tools to decode which DNA changes actually cause disease.
youtube.com
This Is AI Decoding the Genetic Cause of Disease
YouTube video by Gladstone Institutes
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 11/03/2026
Next up at UCSF Research AI Day - Cancer Commons tools and access - uses foundational structure of Information Commons w/ Brinda Venkrtesh @ucsfcancer.bsky.social ai.ucsf.edu/researchday
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UCSF Helen Diller Family Comprehensive Cancer Center @ucsfcancer.bsky.social · 25/02/2026
The legacy of Dr. Felix Feng @ucsanfrancisco.bsky.social lives on at the Feng Symposium on Prostate Cancer Revolutions. Dr. Jeremiah Wala @danafarber.bsky.social reported on his YIA-funded research @conquercancer.bsky.social "Abundance lymphocytic clusters in untreated high-grade prostate cancer"
Jeremiah Wala, MD, PhD @danafarber.bsky.social
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ImmPort @immportdb.bsky.social · 26/02/2026
Congrats to the @ucsf-bchsi.bsky.social and #WayneStateUniversity teams on their work evaluating AI models for prediction of preterm birth! Access the #AI-ready dataset analyzed- via #ImmPortDB here shorturl.at/p214A and the #NSFNAIRRPilot here shorturl.at/h38dS. #OpenData #FAIRdata
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UCSF Helen Diller Family Comprehensive Cancer Center @ucsfcancer.bsky.social · 23/02/2026
“Over the past several years, we’ve had an increasing appreciation for the important relationship between cancer, its treatment, and mental health,” lead author Julian Hong, MD, MS @julianhong.bsky.social @ucsanfrancisco.bsky.social @ucsfhealth.bsky.social www.eurekalert.org/news-release...
eurekalert.org
Does mental health affect mortality risk in adults with cancer?
In a study of adults with cancer published by Wiley online in CANCER, those who developed a mental health condition within the first year after their cancer diagnosis had a hi...
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UCSF Radiation Oncology @ucsfradonc.bsky.social · 24/02/2026
Lead author @julianhong.bsky.social et al publish in Cancer "Association of mental health disorders and all-cause mortality for patients with cancer: Large-scale analysis of UC Health System Data" @americancancersoc.bsky.social Read here! acsjournals.onlinelibrary.wiley.com/doi/10.1002/...
acsjournals.onlinelibrary.wiley.com
Association of mental health disorders and all‐cause mortality for patients with cancer: Large‐scale analysis of University of California Health System Data
In a cohort of more than 371,000 patients, early MHD was associated with higher mortality in the first 12 through 35 months after diagnosis, but this risk decreased over time. The findings highlight ...
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UCSF Radiation Oncology @ucsfradonc.bsky.social · 11/02/2026
Resident Research Day: Driving the Future of Research! Medical & Physics residents presentations, Data Science speakers, Highlights: radonc.ucsf.edu/resident-res... @ucsfcancer.bsky.social @neurosurgucsf.bsky.social @sjohnliu.bsky.social @sueyom.bsky.social @ajh.bsky.social @julianhong.bsky.social
radonc.ucsf.edu
Resident Research Day 2026: Driving the Future of Research - UCSF Department of Radiation Oncology
Medical and Physics residents and faculty convened at the end of January 2026 for Residents Research Day – a full day of insightful presentations, engaging round table discussions, a guest faculty lec...
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 10/02/2026
Check out this latest in NPJ Digital Medicine by Jean Feng et al: www.nature.com/articles/s41... @ucsanfrancisco.bsky.social @ucsfdocit.bsky.social @ucjointcph.bsky.social
nature.com
Scaling medical device regulatory science using large language models - npj Digital Medicine
npj Digital Medicine - Scaling medical device regulatory science using large language models
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 29/01/2026
We're excited to announce the 2nd Annual @ucsanfrancisco.bsky.social Research AI Day w/ keynote Mickey Tripathi, Mayo Clinic Clinic Chief Artificial Intelligence Implementation Officer. Submit a poster, attend a panel & more! ai.ucsf.edu/researchday
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UCSF Health @ucsfhealth.bsky.social · 28/01/2026
Assessing both genetics & heart disease risk factors may help clinicians predict a patient's likelihood of developing dementia, a study finds. And by focusing on controllable factors, patients can be proactive, rather than just waiting for symptoms, Dr. Kristine Yaffe says. ucsfh.org/3M5cuYh
ucsfh.org
Could This Precision Medicine Approach Help Patients Delay Dementia? - UCSF MedConnection
Combining genetic risk with cardiovascular disease risk factors — such as high LDL cholesterol, obesity, and hypertension — may predict who is more likely to develop dementia, according to a new study...
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UCSF Radiation Oncology @ucsfradonc.bsky.social · 27/01/2026
Join us March 21-22 for our UCSF Radiation Oncology Update: The Science and Practice of Reirradiation - a focused training and update on the scientific bases and technological advances enabling reirradiation! Details, Agenda ucsf.cloud-cme.com/course/cours... @ucsfcancer.bsky.social
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Ron Leuty @rleutybiotech.bsky.social · 08/01/2026
Spotted this morning, near where Genentech CEO Ashley Magargee and others will speak Monday, during #JPM26, about Genentech's first 50 years
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Pedro Pinheiro-Chagas @pinheirochagas.bsky.social · 19/12/2025
The UCSF NeuroAI Lab operates from the @ucsfmac.bsky.social within the Department of Neurology at the Weill Institute of Neuroscience. Our work is deeply collaborative, bringing together an exceptional team of clinicians from @ucsf-bchsi.bsky.social , @ucsanfrancisco.bsky.social, Dyslexia Center.
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 09/12/2025
We hope to see you tomorrow, Wed., 12/10 in-person! 10:30 Network/refreshments, seminar at 11am "All Clinical AI Deployment is Local" professor/guest Michael Brudno, PhD @ucsfdocit.bsky.social Toronto calendar.ucsf.edu/event/ucsf-b...
calendar.ucsf.edu
UCSF BCHSI Seminar Series ft Speaker: All Clinical AI Deployment is Local"
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Kathryn A Phillips PhD @kathrynp-phd.bsky.social · 09/12/2025
Excited to announce 1st paper in new Health Affairs Scholar Series #HAS @Health_Affairs by @TuftsCEVR. For almost 20 years, CEVR has been leader on issues pertaining to value, cost-effectiveness, and risk tradeoffs in health care decisions. Watch for more! academic.oup.com/healthaffair...
academic.oup.com
The unintended consequences of the inflation reduction act on biosimilar market incentives and Medicare savings
AbstractIntroduction. The Inflation Reduction Act (IRA) authorizes Medicare price negotiation but includes a “special rule” deferring negotiation for biolo
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 04/12/2025
Congrats Alice Tank on being a Forbes 30 Under 30 - Scientist! www.forbes.com/profile/alic... "Tang is using AI computational tools to understand & diagnose complex diseases like Alzheimer's..." @ucsanfrancisco.bsky.social @ucsfmac.bsky.social @ucsfmedicine.bsky.social
forbes.com
Alice Tang - University of California, San Francisco
Alice Tang is on Forbes' 2026 30 Under 30 - Science list. Read more about Alice Tang, their experience, their asset summary, and more here.
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 02/12/2025
Join us Monday, Dec. 8 at 10am to hear from David Raleigh, faculty / PI for the Brain Tumor Center on "Molecular classification of meningioma for clinical risk stratification and therapeutic innovation" @neurosurgucsf.bsky.social @ucsfcancer.bsky.social calendar.ucsf.edu/event/comput...
calendar.ucsf.edu
Computational Cancer Community (C3) Monthly Meeting
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Marie Binvignat @mbinvignat.bsky.social · 14/11/2025
Thrilled to share our new paper comparing different LLMs to extract TNFi reasons and treatment trajectories from UCSF de-identified EHR data with @bmeow19.bsky.social, A. Garcia-Agundez and @jyazdanymd.bsky.social published in JAMIA open. academic.oup.com/jamiaopen/ar... @ucsf-bchsi.bsky.social
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Wendy Haaf @wendyhaaf.bsky.social · 27/11/2025
Osteoporosis and Alzheimer's disease often occur together, and it turns out it's not just because age is a major risk factor for both conditions. @ucsf-bchsi.bsky.social @perroninstitute.bsky.social tinyurl.com/f862kfc8
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UCSF Radiation Oncology @ucsfradonc.bsky.social · 05/11/2025
Congratulations 2026 FAMIA Inductees @julianhong.bsky.social ! Applied Informatics Recognition Program amia.org/news-publica...
amia.org
Congratulations 2026 FAMIA Inductees
Congratulations to the 2026 class of Fellows of
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UCSF Helen Diller Family Comprehensive Cancer Center @ucsfcancer.bsky.social · 27/10/2025
Large Language Models in Population Oncology: A Contemporary Review on the Use of Large Language Models to Support Data Collection, Aggregation, and Analysis in Cancer Care and Research | @julianhong.bsky.social @ucsf-bchsi.bsky.social team via #JCOCCI ascopubs.org/doi/abs/10.1...
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 16/10/2025
Join our special Oct. UCSF AI Seminar Series, 10/31! Costumes Encouraged/Refreshments served (or Zoom)! We'll honor Atul Butte's enduring legacy showcasing projects built on the computational ecosystem he created @ucsanfrancisco.bsky.social @julianhong.bsky.social calendar.ucsf.edu/event/semina...
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UCSF CODEX @ucsfcodex.bsky.social · 13/10/2025
AI is transforming healthcare fast—but how do we ensure it actually improves diagnosis? UCSF CODEX brought together 30 healthcare leaders to develop practical metrics for measuring AI's impact on diagnostic excellence. Full story: codex.ucsf.edu/news/healthc...
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UCSF Industry Documents Library @ucsf-industrydocs.bsky.social · 09/10/2025
It's #ArchivesMonth!👏 🎉 Join us TODAY to learn how our #Opioid #Archives have been used to examine opioid marketing to veterans. Click to register: jhjhm.zoom.us/webinar/regi...
jhjhm.zoom.us
Welcome! You are invited to join a webinar: Opioid Documents in Action: Examining Opioid Marketing to Veterans. After registering, you will receive a confirmation email about joining the webinar.
Join Christopher K. Haddock and Andrew Kolodny for a Q&A about their research team's recently published article, "Imagine the Possibilities Pain Coalition and Opioid Marketing to Veterans: Lessons for...
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 29/09/2025
@pinheirochagas.bsky.social et al publish their first AI-Human paper! Generated using AI Scientific Writer "Redefining Language & Neurodegeneration Through PPAClinical Phenotypes, Network Vulnerability & Global Research Directions" bakarinstitute.ucsf.edu/news/ai-huma... @ucsanfrancisco.bsky.social
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WashU Informatics, Data Science and Biostatistics @washumedi2db.bsky.social · 19/09/2025
Save the date! 📅 Our annual symposium is April 13, 2026, at the Eric P. Newman Education Center. We are honored to welcome our keynote speaker, Marina Sirota, PhD, @ucsf-bchsi.bsky.social. Visit lnkd.in/giui77Ej for details. #SaveTheDate #DataScience #Biostatistics #Informatics #Symposium #I2DB
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 15/09/2025
Join us Tuesday, Sept. 16th at 10am @gladstoneinst.bsky.social in person or online. Computational Cancer Community (C3) "Decoding Human Cell Architecture – from Spatial Proteomics to Cell Modeling" w/ special guest Emma Lundberg, PhD calendar.ucsf.edu/event/comput...
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John Liu, MD PhD @sjohnliu.bsky.social · 11/09/2025
We are recruiting a postdoctoral fellow in our UCSF lab to work collaboratively on functional genomics methods for brain tumor biology and therapeutics development! opportunities.ucsf.edu/content/post...
opportunities.ucsf.edu
Postdoctoral Scholar - Liu Lab - Neurological Surgery / Radiation Oncology | OCPD Opportunities and Job Board
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Computational Precision Health @ucjointcph.bsky.social · 12/09/2025
How to assess AI fit and function in health, and how does context change the calculus? Hear from Jean Feng @irenetrampoline.bsky.social and Hugo Campos Jr (and others on the CPH YouTube channel). @ajh.bsky.social moderates. buff.ly/YBTvBJD @ucsfdocit.bsky.social
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 25/08/2025
We were honored to share our 10 yr anniversary “A Decade of Impact: Celebrating @atulbutte.bsky.social & BCHSI@10” w/ 200+ people, faculty & community. Read our 10 Yr Report & Watch the recording! bakarinstitute.ucsf.edu/news/decade-... @ucsanfrancisco.bsky.social @ucsfmedicine.bsky.social
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 14/08/2025
We look forward to seeing you at our 10 year anniversary symposium Tues., August 19th ""A Decade of Impact: Celebrating @atulbutte.bsky.social & BCHSI@10." Full agenda is up! calendar.ucsf.edu/event/a-deca... @ucsfhealth.bsky.social @ucsanfrancisco.bsky.social @ucsfmedicine.bsky.social
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UCSF Radiation Oncology @ucsfradonc.bsky.social · 30/07/2025
For @julianhong.bsky.social the funding opens up opportunities to explore how AI can help personalize cancer treatments - improve data sharing so that patients can more easily understand health history, build out the broader cancer knowledge database... www.sfexaminer.com/news/health/...
sfexaminer.com
Docs hope UCSF-Stanford hub can set ‘example’
Donor, schools pledge $200 million effort.
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Gladstone Institutes @gladstoneinst.bsky.social · 24/07/2025
🚨 NEW PUBLICATION 🚨 "Cell-type-directed network-correcting combination therapy for Alzheimer’s disease" from the Huang Lab at Gladstone and @ucsanfrancisco.bsky.social. @cellpress.bsky.social @ucsfcancer.bsky.social @ucsfhealth.bsky.social @ucsf-bchsi.bsky.social
bit.ly
Cell-type-directed network-correcting combination therapy for Alzheimer’s disease
A multi-cell-type drug discovery strategy targeting dysregulated gene networks in neurons and glia identified letrozole and irinotecan as a combination therapy that significantly improved memory and r...
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Gladstone Institutes @gladstoneinst.bsky.social · 27/07/2025
In efforts to beat Alzheimer's disease, researchers are looking at existing drugs that could tackle the condition. A new study from Gladstone and UCSF identifies two promising candidates that are currently used to treat cancer. @ucsanfrancisco.bsky.social @ucsf-bchsi.bsky.social
bit.ly
Scientists Find 2 Existing Drugs Can Reverse Alzheimer's Brain Damage in Mice
In efforts to beat Alzheimer's disease, researchers are looking at existing drugs that could tackle the condition, and a new study identifies two promising candidates that are currently used to treat…
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UCSF Radiation Oncology @ucsfradonc.bsky.social · 23/07/2025
Congratulations to @julianhong.bsky.social & team for Project IMPACT - one of the first to be awarded by the new Weill Cancer Hub West! To build artificial intelligence systems that integrate clinical and biological data for precise, personalized cancer treatments @ucsfcancer.bsky.social
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 21/07/2025
Do These Two Cancer Drugs Have What It Takes to Beat Alzheimer’s? - Marina Sirota, Yadong Huang @gladstoneinst.bsky.social publish in @cellpress.bsky.social ! www.ucsf.edu/news/2025/07... @ucsfcancer.bsky.social @ucsanfrancisco.bsky.social @ucsfhealth.bsky.social
ucsf.edu
Do These Two Cancer Drugs Have What It Takes to Beat Alzheimer’s?
Scientists at UCSF and Gladstone Institutes have identified cancer drugs that promise to reverse the changes that occur in the brain during Alzheimer’s, potentially slowing or even reversing its sympt...
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UCSF Bakar Computational Health Sciences Institute @ucsf-bchsi.bsky.social · 10/07/2025
Why Do Some Brain Regions Resist Alzheimer’s? See @brain1878.bsky.social paper by @rajlab.bsky.social et al. "Selective vulnerability and resilience to Alzheimer's disease tauopathy as a function of genes and the connectome" academic.oup.com/brain/articl... @ucsanfrancisco.bsky.social
academic.oup.com
Selective vulnerability and resilience to Alzheimer's disease tauopathy as a function of genes and the connectome
Anand et al. show that Alzheimer's disease risk genes confer vulnerability or resilience to tau pathology through both network-dependent and independent me
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UCSF Helen Diller Family Comprehensive Cancer Center @ucsfcancer.bsky.social · 10/07/2025
We are taking a moment to celebrate the courage of our @ucsfhealth.bsky.social patients, doctors, nurses, researchers, caretakers, friends, and families by participating in the Courage Over Cancer 5K & 10K Run/Walk in beautiful Tiburon! September 7th: calendar.ucsf.edu/event/courag...
RUN TIBURON is a fundraiser for UCSFʻs Survivorship and Wellness Health services
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UCSF Helen Diller Family Comprehensive Cancer Center @ucsfcancer.bsky.social · 02/07/2025
New study led by Mack Roach III, MD @ucsfradonc.bsky.social tackles a critical challenge in cancer diagnostics: ensuring that AI performs equitably in prognosis for #ProstateCancer across racially diverse patient populations. www.itnonline.com/article/mult...
itnonline.com
Multimodal AI Shows No Evidence of Bias in Prostate Cancer Study
A new study published in JCO Clinical Cancer Informatics tackles a critical challenge in cancer diagnostics: ensuring that artificial intelligence (AI) performs equitably across racially diverse patie...
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Madhumita Sushil @madhumitasushil.bsky.social · 01/07/2025
Looking for a motivated postdoc to work at the intersection of multimodal foundation models and medicine! If you're excited about exploring real-world data and transforming clinical care, please apply! @ucsfdocit.bsky.social @ucsf-bchsi.bsky.social @neurosurgucsf.bsky.social @ucsfcancer.bsky.social
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Computational Precision Health @ucjointcph.bsky.social · 01/07/2025
#Breast #cancer screening reduces mortality, but significant controversy exists over optimal screening guidelines. CPH #PhD student, Michael Nercessian, build on Dr. Adam Yala & colleagues' Mirai, a state of the art risk #prediction model. #AI #ML buff.ly/rejSXij
youtube.com
Mirai-1.5: Assessing Breast Cancer Risk From Any Mammogram
Featuring Michael Nercessian, Computational Precision Health PhD student
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UCSF @ucsanfrancisco.bsky.social · 25/06/2025
The UCSF community mourns the passing of Atul Butte, MD, PhD, a bold thinker, inspiring mentor and founding director of the Bakar Computational Health Sciences Institute. tiny.ucsf.edu/tGz3QY
tiny.ucsf.edu
UCSF Bioinformatics Pioneer Atul Butte Dies at 55
Atul Butte, who championed the use of big data in science and health care and inspired a generation of trainees at UC San Francisco and beyond to pursue the fields he pioneered — translational and cli...
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