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Tyler Kent

@tylervkent.bsky.social
1.2K followers 832 following 142 posts

Postdoc @ University of Chicago Ecology & Evolution Evolutionary genomics mostly The opinions expressed are my own, and they do not necessarily represent the views or opinions of my employer

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Reposted by Tyler Kent
Jenn Coughlan @jenncoughlan.bsky.social · 12h
actual link: www.biorxiv.org/content/10.6...
biorxiv.org
Divergence in wilt tolerance across the range of Mimulus guttatus in the absence of stomatal regulation
Whether phenotypes and environments predict performance under stress is central to ecology and evolution and can reveal species' vulnerability to global change. We sampled Mimulus guttatus range-wide ...
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 01/10/2026
Just over two weeks left to apply! I may be biased, but it’s hard to imagine a better place to do plant evolutionary biology.
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Colin Carlson @colincarlson.bsky.social · 01/10/2026
Very cool new preprint I was very excited to be a VERY small part of, from @viralverity.bsky.social and @nathangrubaugh.bsky.social: "Phylodynamic analysis reveals asymmetric and accelerating global spread of dengue virus" www.biorxiv.org/content/10.6...
Figure 1Figure 4
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Ethan Linck @elinck.bsky.social · 30/09/2026
I'm hiring a postdoc to help build tools for inferring complex speciation histories with genomic data. strong computational skills are a must, but this is a training opportunity. 60K$+ salary, 2 years, details flexible. please reach out! (and repost) ad here: jobs.montana.edu/postings/53150
jobs.montana.edu
Postdoctoral Researcher
The Department of Ecology at Montana State University is seeking a Postdoctoral Research Scholar as part of NSF-funded research on speciation under alternating cycles of gene flow and isolation (fundi...
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Chris Smith @chriscrsmith.bsky.social · 30/09/2026
I'm hiring a postdoc in population and evolutionary genetics at Indiana University Bloomington! We're a computational lab working on spatial demographic inference using genomic data and machine learning. You can apply here: indiana.peopleadmin.com/postings/34508
indiana.peopleadmin.com
Indiana University Academic Positions
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Kacy Gordon @kacylynn.bsky.social · 28/09/2026
JOB ALERT: UNC Bio is hiring 2 tenure track assistant profs doing molecular, cell, and dev bio. The search is intentionally broad, so please share widely and spread the word! Find more information and apply here: unc.peopleadmin.com/postings/325... Application review begins Nov 1.
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Arun Durvasula @arundurvasula.bsky.social · 24/09/2026
new manuscript!
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Jae Young Choi @jychoi.bsky.social · 24/09/2026
New preprint with grad student @linhngk.bsky.social. Big mystery in plants is why do their telomere length vary? We answered by analyzing 10Tb or 1.4 billion reads from 257 species of algae to land plants. We propose ecological adaptation shapes telomere length in plants. shorturl.at/0ox4x
biorxiv.org
Biogeographic cline is associated with the global plant telomere length variation
Telomeres have the crucial role of protecting chromosome ends and its length varies significantly between organisms. What evolutionary factor shapes this natural variation has been a long standing que...
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Maitreya Dunham @maitreya.bsky.social · 24/09/2026
Exciting news: @uwgenome.bsky.social will be hiring for two tenure-track faculty positions this year, one open rank and one assistant professor. Both are “Genome Sciences” interpreted broadly so we welcome applicants working in a variety of fields and methods. Ad will be out shortly.
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Tom Booker @tombooker.bsky.social · 24/09/2026
I’m keen to share this preprint. There is growing evidence that associative overdominance leads to the maintenance heterozygosity and we wondered how this would affect variance for traits under stabilizing selection: www.biorxiv.org/content/10.6...
biorxiv.org
Maintenance of quantitative genetic variation in regions of restricted recombination via associative overdominance
Mutation-selection balance is the most plausible general mechanism for the maintenance of additive genetic variance (VA) for quantitative traits in natural populations. It is well established that the...
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Dan Schrider @samurscicop.bsky.social · 21/09/2026
The (literal) closing of a chapter, former Schrider Lab student Amjad Dabi's paper where he simulates evolutionary rescue scenarios to model the dynamics of treatment resistance in sequential cancer therapy is now published in PLoS Comp Bio: journals.plos.org/ploscompbiol... (1/5)
journals.plos.org
Evolutionary rescue model informs strategies for driving cancer cell populations to extinction
Author summary Cancer cells often evolve resistance to treatments during therapy by acquiring specific mutations, leading to eventual relapse and treatment failure. While using multiple treatments in ...
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Markus Stetter @mgstetter.bsky.social · 18/09/2026
New preprint! 🎉 How do populations adapt to a changing environment? We show how standing genetic variation enables polygenic adaptation, while the speed and magnitude of environmental change can determine whether populations adapt—or go extinct. www.biorxiv.org/content/10.6...
biorxiv.org
Standing genetic variation drives polygenic adaptation to different environmental shifts
Most organisms are well adapted to the environment they have been exposed to for many generations. However, changing environments pose existential threats to populations, unless they are able to adapt...
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Bernard Kim @bernardkim.bsky.social · 15/09/2026
Princeton EEB is running a very broad faculty search at the Assistant Professor level. Please consider applying to join us! This is a wonderful, collaborative, cohesive department with diverse interests and amazing colleagues. apply.interfolio.com/193474
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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PLOS Biology @plosbiology.org · 11/09/2026
How & why does the distribution of fitness effects #DFE vary among species? Meixi Lin, @klohmueller.bsky.social &co analyze genetic variation from 11 animal species, finding that fitness effects are influenced by phylogeny, population size & organismal complexity @plosbiology.org 🧪 buff.ly/t5q7Mqo
Mutations are more deleterious in mammals compared to insects and birds. Left: The phylogenetic relationship among the (sub)species included in this study. Middle: The mean deleterious mutation effects (|s|mean) for 11 (sub)species, assuming a gamma-distributed DFE of neutral and deleterious mutations. From top to bottom, species are increasingly divergent from humans: mice, fin whales, vaquitas, arctic wolves, gray wolves, collared flycatchers, pied flycatchers, halictid bees, Drosophila and mosquitoes. Numbers show the ranks of |s|mean. Right: The shape parameter (alpha) of the gamma-distributed DFE for 11 (sub)species. Numbers show the ranks of alpha.
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Molly Schumer @mollyschumer.bsky.social · 11/09/2026
If anyone looking for a postdoc with fantastic genomics/bioinformatics skills + strong intellect + great energy, please let me know! Preferably West Coast or remote/hybrid options & the candidate is open to a short (1 year) or longer term appointment
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Carl T. Bergstrom @carlbergstrom.com · 11/09/2026
"...solving problems is only a tool and proxy for achieving the primary goal of conceptual understanding and insight. Forgetting this in the world of AI may turn the tool against the primary goal."
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Journal of Evolutionary Biology @jevbio.bsky.social · 11/09/2026
Can selfish genetic elements get away with their selfishness? This depends on ecology of their host organisms. Under certain conditions, selfish genetic elements may spread virtually unopposed by selection: doi.org/10.1093/jeb/... @martijnschenkel.bsky.social @arvidagren.bsky.social & M. Patten
doi.org
The ecological theatre of selfish elements
Abstract. Some selfish genetic elements enhance their transmission to the next generation by interfering with and eliminating competing variants within the
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Molly Przeworski @mollyprz.bsky.social · 11/09/2026
Job opportunity at Columbia U., in "any combination of field, experimental, computational, or theoretical approaches to study fundamental questions in evolutionary biology".
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Graham Coop @gcbias.bsky.social · 10/09/2026
I’m looking to hire an NIH funded postdoc to join our lab here at Davis (please RT). Ongoing areas of interest include: 1) polygenic signals of selection from time series, ARGs, GWAS, etc 2) The interpretation of GWAS, polygenic scores, & sources of confounding
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Rachel Moran @rachelmoran.bsky.social · 09/09/2026
Our lab's first journal cover! Art by @taylorblack.bsky.social and project led by @brynnjohnson13.bsky.social
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Tom Sasani @tomsasani.bsky.social · 02/09/2026
How long does DNA damage last? @aaronquinlan.bsky.social and I found evidence that lesions are transmitted from parent (P0) to offspring (F1) in C. elegans. If they segregate unrepaired for multiple cell divisions, lesions generate multi-allelism in the F1 germline. www.biorxiv.org/content/10.6...
biorxiv.org
Inherited DNA damage generates multi-allelic mutations in C. elegans
Exogenous and endogenous mutagens generate a wide variety of DNA lesions, including bulky adducts, chemical modifications, and single- or double-stranded breaks. A phenomenon called “lesion segregation,” in which lesions evade repair and persist for multiple cell divisions, has recently been documented in tumors and healthy somatic tissues from mice and humans, respectively. Persistent lesions can generate multi-allelic variants (MAVs) by serving as templates for multiple rounds of error-prone replication. By reanalyzing data from a large C. elegans mutagenesis experiment, we observed robust evidence for MAVs at a small fraction (∼0.2%) of mutated sites in the offspring of strains treated with alkylating agents. Because these sequencing data were derived from the progeny of a single F1 animal — itself the offspring of a mutagenized P0 — all mutations should be biallelic. The presence of multi-allelic variation implies that some DNA lesions are transmitted to the F1 zygote, evade repair, and are repeatedly bypassed by error-prone polymerases during embryogenesis. We suspect that many more lesions are inherited than is suggested by MAV prevalence, and that a large fraction of biallelic mutations are also caused by inherited lesions. Our results demonstrate that DNA lesions serve as durable, transgenerational templates for mutagenesis in C. elegans . We speculate that lesion segregation in the early embryo may be a source of mosaicism and genetic diversity in humans, as well. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, https://ror.org/01cwqze88, R01HG012252
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Evolution Letters @evolletters.bsky.social · 31/08/2026
Recombination helps evolution—but it can also cause mutations. New theory shows that even small increases in mutation near crossovers can oppose the evolution of higher recombination rates. By @sarperotto.bsky.social and Bret Payseur academic.oup.com/evlett/advan...
academic.oup.com
Elevated mutation near crossovers inhibits the evolution of recombination
Abstract. Recombination diversifies offspring genomes and helps ensure chromosome segregation during meiosis. Mutation rates are elevated near crossovers d
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David Lowry @davidlowry.bsky.social · 31/08/2026
I am currently searching for a postdoc to work on the evolution of adaptations, cold acclimation, and freezing tolerance in switchgrass. The position entails lab, growth facility, bioinformatics, and fieldwork. careers.msu.edu/jobs/postdoc...
careers.msu.edu
Postdoctoral Scholar-Fixed Term - East Lansing, Michigan, United States
Position Summary The Lowry Lab at Michigan State University is searching for a postdoctoral research associate to conduct field and laboratory experiments to understand the causes of genetic variation...
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Gavin Woodruff @weirdworms.bsky.social · 31/08/2026
Transposable Elements and the Impact of Genomic Autoimmunity www.annualreviews.org/content/jour...
annualreviews.org
Transposable Elements and the Impact of Genomic Autoimmunity
Transposable elements (TEs), originally characterized in maize, are ubiquitous features of eukaryotes and replicate within genomes independent of the host replication cycle. This replicative advantage...
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Chris Jiggins @chrisjiggins.bsky.social · 29/08/2026
Great work by Cian Williams in his fourth year undergrad - predicting the range of an invasive pest in north america informed by genomics of local adaptation in native range - also @henrylnorth.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
Genetically informed distribution models refine predictions for the overwintering range of Helicoverpa armigera in North America
The ecological and economic threat posed by invasive pests demands proactive mitigation. Species distribution models (SDMs) are widely used in efforts to predict where invasive species might spread af...
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PLOS Biology @plosbiology.org · 27/08/2026
What are the genetic mechanisms for the #evolution of novel traits? This study by @brhopkins92.bsky.social &co links #Drosophila sex comb teeth to expression changes within ancestral cells, leading to diverged metabolic/developmental rates, and a novel structure. 🧪 #AcademicSky plos.io/4gQOnZK
Graphical abstract on the gain of a novel trait in Drosophila. The teeth of the recently evolved, male-specific Drosophila sex comb evolved from a more ancient organ, the mechanosensory bristle. We show that changes in the expression of genes that are shared between mechanosensory bristle and sex comb teeth cells lead to changes in a variety of fundamental cellular processes that together enable the morphological transformation.

The photo, phylogeny, general design are those of the corresponding author(s). They made the bristle schematics in biorender and the fly silhouette is their modified drawing of D. melanogaster from SciDraw (https://doi.org/10.5281/zenodo.3925939).
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Sam Yeaman @samyeaman.bsky.social · 27/08/2026
Very excited about SimGEA: a method for detecting genomic signatures of local adaptation developed by Takahiro Sakamoto. Unlike previous methods, it achieves good control of the false discovery rate (on simulated data) while maintaining reasonable power www.biorxiv.org/content/10.6...
Figure showing the false discovery rate for simGEA (green), kendall's tau (red), LFMM2 (purple), and Baypass (blue). Kendall's tau involves uniformly high false discovery, as expected. Both LFMM2 and Baypass incur substantial false discovery rates (even above 50% in some scenarios). SimGEA achieves a well controlled false discovery rate across all scenarios we tested.
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MEPGT @mepgt.bsky.social · 03/08/2026
A nice paper by @ahancock.bsky.social, A VIM2/4 deletion, and premature truncations of CMT2 and FBX5, drive DNA methylation changes after colonization of a novel habitat. Nat. Plants (2026). doi.org/10.1038/s414...
doi.org
A VIM2/4 deletion, and premature truncations of CMT2 and FBX5, drive DNA methylation changes after colonization of a novel habitat - Nature Plants
This study shows that Arabidopsis thaliana colonizing the Cape Verde Islands rapidly evolved altered DNA methylation patterns through high-impact mutations affecting VIM2/4, CMT2 and FBX5, linked to a...
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Arvid Ågren @arvidagren.bsky.social · 18/08/2026
New paper with Nick Davies and Kevin Foster in @natcomms.nature.com. We show that often neither selection against transposons’ deleterious effects nor exploitation by parasitic elements is sufficient to keep them in control. Only active host suppression does. www.nature.com/articles/s41...
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john-pool.bsky.social @john-pool.bsky.social · 17/08/2026
My lab has an open staff position. It's for 1 year; could be nice for a recent grad building up their experience. But please share promptly: apps due by end of Thursday! The focus is on variation among labs' copies of common lab stocks like Canton-S & Oregon-R. jobs.wisc.edu/jobs/researc...
jobs.wisc.edu
Research Specialist - Madison, Wisconsin, United States
Current Employees: If you are currently employed at any of the Universities of Wisconsin, log in to Workday to apply through the internal application process.Job Category:Academic StaffEmployment Type...
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Linley Sherin @linley-sherin.bsky.social · 15/08/2026
🚨My first PhD chapter is now out on bioRxiv ! A 🧵 1/n
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Filip Ruzicka @filipruzicka.bsky.social · 15/08/2026
A new preprint with @cmackintosh.bsky.social and Tim Connallon, where we revisit Haldane's idea that dominance might evolve during the spread of a beneficial mutation to fixation. Happy for any feedback!
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 15/08/2026
Coalescent-Based Time-Stratified Statistics Reveal Population Structure Dynamics using the Ancestral Recombination Graph www.biorxiv.org/content/10.64898/20…
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Mark Hibbins, Great Lakes Swashbuckler @rejectresubmit.bsky.social · 14/08/2026
New review from me and @stepheniwright.bsky.social! We argue the time is ripe for a phylogenomic approach to the study of plant sex chromosomes: doi.org/10.32942/X2S...
doi.org
Plant sex chromosome evolution in the phylogenomic era
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 12/08/2026
I am excited to announce a job for an Asst Prof in Plant Evolution in the dept. of Evolution and Ecology at @ucdavis.bsky.social. We're looking broadly, from macro (speciation, comparative genomics, evo-devo) to micro (pop biology, adaptive evolution, evo-eco). recruit.ucdavis.edu/JPF07777
recruit.ucdavis.edu
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Graham Coop @gcbias.bsky.social · 12/08/2026
Excited for @gabrielesgarlata.bsky.social’s new preprint on the Genome-Wide Effect of Drift and Selection over a Single Generation 1/n www.biorxiv.org/content/10.6...
biorxiv.org
The Genome-Wide Effect of Drift and Selection over a Single Generation
The relative importance of genetic drift versus selection to evolutionary change has long been debated. This debate has mainly focused over long-time-scales (e.g. hundreds of thousands of generations)...
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Mark Hibbins, Great Lakes Swashbuckler @rejectresubmit.bsky.social · 10/08/2026
I'm recruiting a PhD student to work on an NSF-funded project developing new models of trait evolution for phylogenetic comparative methods! Info about the lab here: mhibbins.github.io Applications to our grad program are due December 1. Please share!
mhibbins.github.io
Hibbins Lab
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Jae Young Choi @jychoi.bsky.social · 10/08/2026
Excited to share a study led by my postdoc Naseem Samo. If you evolve an "unusual" telomere DNA does your telomerase also coevolve to maintain interaction with that strange telomere? Answer we find is YES! www.biorxiv.org/content/10.6...
biorxiv.org
Rapid evolution and functional divergence of the monkeyflower Mimulus lewisii telomerase
Telomeres are nucleoprotein structures that protect chromosome ends and are maintained by the Telomerase Reverse Transcriptase (TERT) protein that uses a noncoding Telomerase RNA (TR) as a template. I...
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Evolutionary Ecology Group, Cambridge @eegcam.bsky.social · 31/07/2026
3 postdoc open positions in our lab on a project developing new AI methods to integrate genetics and ecological data to predict the impact of global change on species - see below
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Henry Arenas-Castro @henryarenas.bsky.social · 03/08/2026
"How two hybridizing monkeyflowers resist phenotypic homogenization" I'm very happy to share this. We would really appreciate your feedback!
Slide with the title and authors list of a manuscript along with illustrations of the monkeyflowers Mimulus guttatus (left) and Mimulus glaucescens (right). In the background, a Manhattan plot with outlier loci and QTL locations.
Title: Maintenance of phenotypic divergence in two sympatric monkeyflowers with weak reproductive isolation
Authors: Henry Arenas-Castro, Cage Cochran, Quinn Evans, Hongfei Chen, Jenn M. Coughlan
Manuscript: bioRxiv, 10.64898/2026.07.28.741377
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Julia Kreiner @jmkreiner.bsky.social · 31/07/2026
uchicago.wd5.myworkdayjobs.com/External/job... The Kreiner and Carley Lab groups are hiring a shared Research Analyst to help lead wet lab protocol development and management. We're a fun group and would love to hear from you :) Get in touch with questions!
uchicago.wd5.myworkdayjobs.com
Research, Analyst
Department BSD E&E Carley Lab About the Department The Kreiner Lab (kreinerlab.com) and Carley Lab (carleylab.uchicago.edu) in the Department of Ecology & Evolution at The University of Chicag...
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Cell Reports @cp-cellreports.bsky.social · 30/07/2026
Comparative population genomics reveals adaptive convergence in two Drosophila species across global environments
dlvr.it
Comparative population genomics reveals adaptive convergence in two Drosophila species across global environments
Li et al. compare global genomes of D. melanogaster and D. simulans across evolutionary timescales. They show that 12%–17% of adaptively evolving genes are shared between species, with minimal overlap at the nucleotide level, revealing a hierarchical repeatability of adaptation.
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 29/07/2026
Folks! @gcbias.bsky.social and I have two slots left in our popgen workshop. Aug 10-21, 9-11am (Pacific) via zoom. We’re raising money for research grants for grad students. $500 a seat. Spots available to first folks to respond. DM me if interested.
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Ethan Linck @elinck.bsky.social · 29/07/2026
grateful to have received the lab's first NSF grant to study cyclical processes of speciation with new theory and tools (applied to Melanesian birds). ad to come, but I'll be looking for a postdoc with computational biology chops—please reach out! (and repost) www.nsf.gov/awardsearch/...
screenshot of public abstract of NSF award, linked in post
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Tyler Kent @tylervkent.bsky.social · 29/07/2026
open.spotify.com
What Happens When the Heart Just Stops
The Frames, Glen Hansard · For the Birds · Song · 2001
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Mahul Chakraborty @mahulchak.bsky.social · 27/07/2026
Beyond providing insight into the centromere paradox, this work demonstrates that complete chromosome reconstruction is now possible from wild-caught flies, opening new opportunities for population, functional, and quantitative genomics in Drosophila. Preprint here: www.biorxiv.org/content/10.6...
biorxiv.org
A conserved architectural domain shapes centromere evolution in Drosophila
Centromeres ensure faithful chromosome segregation despite being embedded within rapidly evolving repetitive DNA, a contradiction known as the centromere paradox. While centromere identity is defined ...
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Alex Mackintosh @thymelicus.bsky.social · 19/07/2026
New preprint on the effect of ancient admixture / structure on genealogical trees. I introduce a new way of summarising reconstructed genealogies that captures a clear signal of ancient gene flow into the ancestors of modern humans. Feedback welcome!
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Jeff Groh @jeffgroh.bsky.social · 28/07/2026
Avocados come in 2 varieties - A-types start each day female and switch to male midday. B-types do the reverse. In work just published from the last chapter of my PhD, we show this system evolved 40+million yrs ago and is regulated by alleles of 1 transcription factor www.pnas.org/doi/10.1073/...
pnas.org
Balanced polymorphism in a floral transcription factor underlies the ancient rhythm of daily sex alternation in avocado | PNAS
In avocado and certain wild relatives in Lauraceae, a highly synchronized daily rhythm of floral sex timing promotes cross-pollination between two ...
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MaizeGDB @maizegdb.bsky.social · 27/07/2026
We are deeply saddened to share that Michael Freeling passed away on 7/20/2026 after a year-long battle with cancer. Our deepest condolences go to his family, friends, colleagues, and the many students he inspired. We will share additional memorial information soon.
We are very sorry to share the sad news that Michael Freeling passed away on 7/20/2026 after a year long battle with esophageal cancer.  Mike was a long-time faculty member in the Plant and Microbiology Department at University of California-Berkeley, a groundbreaking plant geneticist, and an inspiring teacher and mentor to over two dozen Ph.D. students, four dozen postdocs, and countless undergraduates. He was best known for pioneering work on maize anaerobic metabolism and gene regulation, transposon biology, developmental genetics of the maize ligule, and the discovery of biased gene retention following whole-genome duplications in plants. Mike was hired by UC-Berkeley as an assistant professor straight out of graduate school in 1973, and he was promoted to Associate Professor in 1979 and to full professor in 1984. He was selected as a Guggenheim Fellow in 1980, elected to the National Academy of Sciences in 1994, and won the McClintock Prize for Plant Genetics and Genome Studies in 2017. Mike taught genetics, comparative genomics and scientific reasoning to our graduate students, and he also taught a popular genetics course for non-majors that had various titles over the years but was affectionately known as “Genetics for Poets.”  Our deepest condolences go out to his family, friends and many colleagues.
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