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Bernard Kim

@bernardkim.bsky.social
330 followers 167 following 24 posts

Assistant Professor at Princeton EEB. Popgen, evolution, genomics, and large-scale biodiversity datasets. Mostly working on Drosophila for now.

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Reposted by Bernard Kim
Sasha (Alexandra) Khristich @khristich.bsky.social · 22/09/2026
I’m excited to share our preprint with @oliviamghosh.bsky.social, where we explore what it takes to ‘win’ in long-term evolutionary competition: www.biorxiv.org/content/10.1...
biorxiv.org
Adaptive evolution can overwrite initial natural fitness variation only in highest-fitness yeast isolates
The fitness of an organism determines its likelihood of succeeding in short-term competition, but many other factors can influence its long-term success. In this study, we investigate the relative con...
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Bernard Kim @bernardkim.bsky.social · 15/09/2026
Princeton EEB is running a very broad faculty search at the Assistant Professor level. Please consider applying to join us! This is a wonderful, collaborative, cohesive department with diverse interests and amazing colleagues. apply.interfolio.com/193474
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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Reposted by Bernard Kim
Noah Whiteman @nkwhiteman.bsky.social · 07/09/2026
Princeton and environs peeps: I’ll be giving an EEB seminar on horizontal gene transfer two Thursdays from now (September 16th at 12:15pm)—I hope to see you there: eeb.princeton.edu/events/eeb-5...
eeb.princeton.edu
EEB 522 Seminar Series - Noah Whiteman
Although horizontal gene transfer (HGT) is a central mechanism by which novel gene functions arise in prokaryotes and microbial eukaryotes, its role in the evolution of novelty in animals, which have ...
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Reposted by Bernard Kim
José Aguilar-Rodríguez @jaguilarrod.bsky.social · 22/10/2025
One of the most exciting works of my career, years in the making. We used high-throughput precision genome editing to test the fitness effects of thousands of natural variants. Our findings challenge the long-held assumption that common variants are inconsequential. www.biorxiv.org/content/10.1...
biorxiv.org
Massively parallel interrogation of the fitness of natural variants in ancient signaling pathways reveals pervasive local adaptation
The nature of standing genetic variation remains a central debate in population genetics, with differing perspectives on whether common variants are almost always neutral as suggested by neutral and n...
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Skyler Berardi @skylerberardi.bsky.social · 31/07/2025
Check out our paper in Evolution Letters! We used D. melanogaster pigmentation as a focal trait to explore parallelism in phenotypic and genomic responses to environmental change - read more at the link below 👇
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Reposted by Bernard Kim
Samuel Church @shchurch.bsky.social · 21/06/2025
Wish I could be at #Evol2025 this year! I’ll be starting a new lab at NYU this fall, and will be recruiting at all levels. Please spread the word if you know anyone who wants to work on evo. genomics, phylogenies, and comparative development of inverts (like Hawaiian Drosophila!) shchurch.github.io
Drosophila picticornis, a Hawaiian fly with patterned wings
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Reposted by Bernard Kim
Ben Hopkins @brhopkins92.bsky.social · 18/06/2025
I am delighted to be starting as an assistant professor in the Department of Molecular Genetics & Microbiology at the University of Florida in January 2026. The lab is broadly interested in the functional, developmental, and evolutionary genetics of cell types and organs across flies and beyond 🪰🧬
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Reposted by Bernard Kim
Xinjun Zhang @zhanglabpopgen.bsky.social · 08/05/2025
Super excited to share my latest preprint with @klohmueller.bsky.social! Here we leverage the unique signature that recessive deleterious variants can lead to an increase in archaic ancestry to tackle a classic question - the dominance distribution on the human genome www.biorxiv.org/content/10.1...
biorxiv.org
Neanderthal introgressed ancestry reveals human genomic regions enriched with recessive deleterious mutations
Negative natural selection on deleterious mutations plays a key role in shaping human genetic variation. Understanding the dominance of deleterious mutations is critical as it can fundamentally impact...
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Reposted by Bernard Kim
James Hemker @jahemker.bsky.social · 25/04/2025
Excited to share the first manuscript from my PhD in which we leveraged ultra-long Nanopore sequencing, D. melanogaster inbred lines, and a ton of manual validation to investigate the effects of long-read length on population-level structural variant (SV) calling accuracy! doi.org/10.1101/2025...
doi.org
Manual validation finds only ultra-long long-read sequencing enables faithful, population-level structural variant calling in Drosophila melanogaster euchromatin
The increasing accessibility of long-read sequencing and the rapid development of automated variant callers are promoting the generation of population-level structural variation data. However, the eff...
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Mark D. Garfinkel, Ph.D. @mdgarfinkel.bsky.social · 17/04/2025
To my fellow #Drosophila colleagues & friends... As you know @flybase.bsky.social has been under financial pressure due to #NIH cuts for several years. With the threats Harvard is currently facing, supporting FlyBase is even more essential. If you have the means, make a tax-deductible donation.
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Bernard Kim @bernardkim.bsky.social · 16/04/2025
A lot of folks have asked about gene annotations for the Drosophila genome data. @pankajd.bsky.social and @darrenobbard.bsky.social have something for you!
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Reposted by Bernard Kim
Darren Obbard @darrenobbard.bsky.social · 16/04/2025
I know you like #Drosophila and I know you like #Genomes - but do you also like #Genes? Coding DNA annotation of 304 species of Drosophilidae! www.biorxiv.org/content/10.1...
biorxiv.org
Comparative gene annotation of 304 species of Drosophilidae
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Julia Beets @juliabeets.bsky.social · 07/03/2025
Preprint alert: FlyCADD! 🧬 Excited to share FlyCADD: impact prediction tool scoring the functional impact of any single nucleotide variant across the entire Drosophila melanogaster genome, to distinguish causal from neutral SNPs www.biorxiv.org/content/10.1...
biorxiv.org
Predicting the functional impact of single nucleotide variants in Drosophila melanogaster with FlyCADD
Understanding how genetic variants drive phenotypic differences is a major challenge in molecular biology. Single nucleotide polymorphisms form the vast majority of genetic variation and play critical...
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Bernard Kim @bernardkim.bsky.social · 24/02/2025
Please share! In addition an important resource for improving human health, it will grow to be an incredible resource for science. E.g. we envision layering population genomic data across all species and connecting to other insect systems. There are so many cool questions to ask w/this kind of data.
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Reposted by Bernard Kim
Marianna Karageorgi @mkarag.bsky.social · 22/01/2025
How is functional variation at large-effect loci maintained in natural populations? Thrilled to share our work showing how beneficial dominance reversal helps fruit flies maintain a resistance polymorphism as selection varies in their environment! A thread 🧵 1/n www.biorxiv.org/content/10.1...
biorxiv.org
Dominance reversal maintains large-effect resistance polymorphism in temporally varying environments
A central challenge in evolutionary biology is to uncover mechanisms maintaining functional genetic variation1. Theory suggests that dominance reversal, whereby alleles subject to fluctuating selectio...
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Reposted by Bernard Kim
Seungsoo Kim @seungsookim.bsky.social · 20/01/2025
Hello Bluesky friends! I am a #newPI starting at UC Irvine in April, interested in gene regulation and functional genomics in stem cell models of development (esp neural crest). We are hiring at all levels – please reach out/spread the word! sskimlab.org
sskimlab.org
Kim Lab at UC Irvine
Visit the post for more.
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Bernard Kim @bernardkim.bsky.social · 04/10/2023
With Hannah Gellert, Sam Church, Anton Suvorov, @petrovadmitri.bsky.social, and others, we use low-input (down to 30ng), single-insect Nanopore sequencing to help do 184 new genomes and address the near absence of genomic data for drosophilid species that cannot be cultured in the lab.
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