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Thomas Balan

@thomasbalan.bsky.social
155 followers 206 following 22 posts

Postdoc in the Duharcourt lab @ijmonod.bsky.social Looking into histone modifications during programmed DNA elimination in Paramecium Somewhere on a boat when not in the lab

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Reposted by Thomas Balan
sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 08/09/2026
Very happy to see our Nature Reviews Genetics article on programmed DNA elimination across eukaryotes out! A fantastic collective effort with an amazing group of colleagues, born from inspiring discussions at the Fondation des Treilles. rdcu.be/tmvKgsPZNhBa @laurarossevo.bsky.social
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Nature Reviews Genetics @natrevgenet.nature.com · 08/09/2026
New online! The mechanistic and evolutionary diversity of programmed DNA elimination
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The mechanistic and evolutionary diversity of programmed DNA elimination
Nature Reviews Genetics, Published online: 08 September 2026; doi:10.1038/s41576-026-01004-7Programmed DNA elimination is a developmentally regulated process in which specific DNA sequences are reproducibly removed from particular cell lineages. Here, the authors review the mechanistic diversity and evolutionary dynamics of DNA elimination, spanning chromosome breakage, whole-chromosome elimination and whole-genome elimination.
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Peter Andersen @germline.bsky.social · 02/09/2026
Finally - the 🧵! So, the piRNA pathway defends the animal germline from transposons. But most of what we know comes from narrow developmental windows like late oogenesis, where it's easiest to study. We asked if the pathway is the same across development. It is not! /+
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Tobias Warnecke @tobiaswarnecke.bsky.social · 22/08/2026
Who needs chromatin anyway...? NOT THIS GUY! www.biorxiv.org/content/10.6... 1/n
biorxiv.org
Chromatin is dispensable for bacterial life
Inside cells, DNA is intimately associated with proteins, forming chromatin. The protein constituents of chromatin vary across the tree of life: histones are the principal building blocks of chromatin...
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Sean Montgomery @seanamontgomery.bsky.social · 03/08/2026
Glad to see this out at last! Check out Arnau's summary below for all the highlights
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Alex de Mendoza @alexdemendoza.bsky.social · 02/06/2026
Capolavoro 🎨 alert 🚨! What is the role of gene body methylation in invertebrates? Despite extensive speculation linking it to plasticity and environmental responses, its mechanistic effects and heritability remain unclear. Our take out in @natecoevo.nature.com: www.nature.com/articles/s41... 1/
nature.com
Gene body methylation suppresses intragenic transcription and permits epigenetic inheritance in a cnidarian - Nature Ecology & Evolution
Experiments in the cnidarian Nematostella vectensis show a role of gene body methylation in transposable element suppression and that epigenetic inheritance is constrained by chromatin context and tra...
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CNRS Biologie @cnrsbiologie.bsky.social · 28/04/2026
#ResultatScientifique🔎|Activer pour mieux réprimer ? Chez la paramécie, la transcription aide à verrouiller le génome contre les éléments mobiles🧬 ✍️ @sandraduharcourt.bsky.social 📕 Genome Biology ▶️ buff.ly/RgSZhfQ 🤝 @ijmonod.bsky.social @upcite.bsky.social @cnrs-idf-villejuif.bsky.social @cnrs.fr
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Thomas Balan @thomasbalan.bsky.social · 20/04/2026
Really happy to share that our preprint is now published in @narjournal.bsky.social! 🎉
academic.oup.com
A developmental condensin I complex assists the Paramecium PiggyMac domesticated transposase during programmed DNA elimination
Abstract. Prokaryotes and eukaryotes use diverse strategies to cope with invading mobile genetic elements, including programmed DNA elimination (PDE). In t
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Reposted by Thomas Balan
sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 20/04/2026
now published at BMC Biology! rdcu.be/fdITD
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The tiny germline chromosomes of Paramecium aurelia have an exceptionally high recombination rate and are capped by a new class of Helitrons
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Maxim Greenberg @maxvcg.bsky.social · 17/04/2026
There are Science papers and then there are *I just dropped and shattered my mug of coffee Usual Suspects style* Science papers www.science.org/doi/10.1126/...
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Institut Jacques Monod @ijmonod.bsky.social · 14/04/2026
✍️ The @sandraduharcourt.bsky.social Lab published a new article 📖 Genome Biology 📃 A H3K27me3 reader complex couples H3K27me3 accumulation to nascent transcription of transposable elements in Paramecium 🔗 link.springer.com/article/10.1...
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Thomas Balan @thomasbalan.bsky.social · 08/04/2026
First first-author paper out! 🎉 We show that the classically repressive mark H3K27me3 can be linked to active transcription through a newly identified reader complex 🤯 Really grateful to everyone involved in this project during my PhD! Thread below 👇
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Peter Andersen @germline.bsky.social · 01/04/2026
Germ cells have their own versions of core transcription factors and fertility depends on them. We're hiring a PhD student to figure out how! 📢 Fly genetics + proteomics + genomics. Fully funded. Aarhus University 🇩🇰 Deadline May 1 👇 Please share with anyone who might be interested!
phd.nat.au.dk
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Jaruwatana (Sodai) Lotharukpong @sodail.bsky.social · 31/03/2026
Our work on chromatin evolution in brown algae is finally out! This is also my first "co-first author" paper!! I’m excited to share what we found 👇
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Guillermina Ramirez-SanJuan @guille-rochelle.bsky.social · 23/02/2026
Excited to share our new preprint exploring how Paramecium achieves diverse flow functions, i.e. feeding and swimming, simultaneously. This work was spearheaded by our ExM expert, PhD student Daphne Laan @daphnelaan.bsky.social : www.biorxiv.org/content/10.6...
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 23/02/2026
Excited to announce the upcoming Jacques Monod Conference on the mechanistic and evolutionary basis of programmed DNA elimination (Sept 21–25, 2026): cjm.sb-roscoff.fr/en/conferenc... Organized by @laurarossevo.bsky.social and myself.
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Dominik Handler @86dominik.bsky.social · 13/02/2026
How does the piRNA pathway solve the self vs. non-self problem? 🧬 Since piRNAs come from single-stranded RNA, how does the cell choose the right ones? For years, "piRNA clusters" were seen as THE privileged source. But are they really special and earmarked for biogenesis? (1/19)
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bioRxiv Molecular Biology @biorxiv-molbio.bsky.social · 10/02/2026
A Naïve RNA Sampling Core Enables Adaptive piRNA Specificity Against Transposable Elements www.biorxiv.org/content/10.64898/20…
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 05/01/2026
Happy to begin the year with the publication of a Journal Club article - Programmed ‘DNA splicing’ removes transposons from genes. rdcu.be/eXBym
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Programmed ‘DNA splicing’ removes transposons from genes
Nature Reviews Molecular Cell Biology - A study that showed that programmed DNA elimination in somatic genomes of ciliates involves excision of intrusive, transposon-derived sequences from genes.
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Alex de Mendoza @alexdemendoza.bsky.social · 18/11/2025
Out today, our take on 6-methyladenine #6mA evolution in Eukaryotes @natgenet.nature.com. We asked a simple question, is really DNA 6mA common across the eukaryotes? The answer is "yes" if you're a unicellular eukaryote 🦠, not so if you're multicellular 🐝🌱🍄. www.nature.com/articles/s41... 1/9
nature.com
Adenine DNA methylation associated with transcriptionally permissive chromatin is widespread across eukaryotes - Nature Genetics
Long-read sequencing in 18 unicellular eukaryotes reveals that 6mA is widespread across eukaryotes and is enriched at transcriptionally permissive regions, which are also marked by H3K4me3.
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 10/11/2025
Excited to share our new preprint on BioRxiv! A collaborative effort spanning many years and several labs to uncover what the germline chromosomes of Paramecium really look like. 🔗 www.biorxiv.org/content/10.1... 1/5
biorxiv.org
The tiny germline chromosomes of Paramecium aurelia have an exceptionally high recombination rate and are capped by a new class of Helitrons
Background. Paramecia belong to the ciliate phylum of unicellular eukaryotes characterized by nuclear dimorphism. A diploid germline micronucleus (MIC) transmits genetic information across sexual gene...
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Svetlana Dodonova @dodonova-sveta.bsky.social · 28/10/2025
Lab’s first paper is out!! We show the first structures of #Asgard #chromatin by #cryo-EM 🧬❄️ Asgard histones form closed and open hypernucleosomes. Closed are conserved across #Archaea, while open resemble eukaryotic H3–H4 octasomes and are Asgard-specific. More here: www.cell.com/molecular-ce...
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PLOS Biology @plosbiology.org · 27/10/2025
How do pleiotropic TFs generate organized diversity in developing tissues? @spinalorga.bsky.social shows that PAX3 & PAX7 organize #SpinalCord by acting as both repressors & pioneer activators, regulated by #morphogens to ensure precise neural subtype specification @plosbiology.org 🧪 plos.io/4qumsla
BMP signaling-dependent dorsal-to-ventral gradient of PAX3/7 transcriptional activity revealed by the P34::tk::LacZ reporter. Left: expression patterns of neural progenitor (NP) and interneuron (IN) TF markers in the developing spinal cord. Right: Immunostaining for β-galactosidase (β-gal; red/grey), GFP (blue/grey) and either OLIG3 (green/grey) or pSMAD1/5/9 (green/grey) on transverse sections of E9.0 (bottom) and E9.5 (top) P34::tk::LacZ; Pax3+/GFP spinal cords at brachial level. Black and white panels show magnified views of the boxed region.
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Thomas Balan @thomasbalan.bsky.social · 21/10/2025
🚨 Excited to share my first preprint on bioRxiv! 🎓 We uncover a non-canonical role of condensin I, beyond chromosome segregation 🧬 This work is the fruit of a collaboration between the @sandraduharcourt.bsky.social & @betermieri2bc.bsky.social labs! ➡️ doi.org/10.1101/2025...
doi.org
A developmental condensin I complex assists the Paramecium PiggyMac domesticated transposase during programmed DNA elimination
Prokaryotes and eukaryotes use diverse strategies to cope with invading mobile genetic elements, including programmed DNA elimination (PDE). In the ciliate Paramecium , elimination of transposable ele...
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 17/10/2025
Our latest paper on a histone methyltransferase-independent function of PRC2 controlling small RNA dynamics during programmed DNA elimination in Paramecium is now published in #NAR. #RNAbiology #TEsky #smallRNAs #PRC2 #DNAelimination 1/5 academic.oup.com/nar/article-...
academic.oup.com
A histone methyltransferase-independent function of PRC2 controls small RNA dynamics during programmed DNA elimination in Paramecium
Abstract. To limit transposable element (TE) mobilization, most eukaryotes have evolved small RNAs to silence TE activity via homology-dependent mechanisms
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 23/09/2025
Huge congratulations to Thomas on this well-deserved award. His PhD defense last week was outstanding too - a great moment. He’ll on the lookout for a postdoc position soon…spread the word!
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Tobias Warnecke @tobiaswarnecke.bsky.social · 08/09/2025
Please re-post: Interested in chromatin and its evolution? Good news! There's still time to join us in beautiful Catalonia (9-12 Dec) to discuss eukaryotic, bacterial, archaeal, and viral chromatin and how it all hangs together meetings.embo.org/event/24-evo... Abstract deadline: 30 September
meetings.embo.org
EvoChromo: Evolutionary approaches to research in chromatin
Chromatin is the complex of DNA, RNA and protein that is found making up the chromosomes in eukaryotic cells. Chromatin is essential for proper genome function and is involved in chromosome segregati…
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Thomas Balan @thomasbalan.bsky.social · 26/08/2025
👀
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Institut Jacques Monod @ijmonod.bsky.social · 25/08/2025
📢 Institut Jacques Monod Seminar 📅 September 18th 📍 Institut Jacques Monod Invited by @sandraduharcourt.bsky.social’s lab, Peter Andersen ( @germline.bsky.social ) will give the IJM Seminar "Running to stand still – Recurrent innovation of animal germline genome regulation" ➡️ buff.ly/yaK2kTQ
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Nature Structural & Molecular Biology @natsmb.nature.com · 17/06/2025
New online: Binding of heterochromatin protein Rhino to a subset of piRNA clusters depends on a combination of two histone marks
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Binding of heterochromatin protein Rhino to a subset of piRNA clusters depends on a combination of two histone marks
Nature Structural & Molecular Biology, Published online: 17 June 2025; doi:10.1038/s41594-025-01584-8The authors reveal that, in fruit fly ovaries, the protein Rhino is guided to specific regions of the genome by a combination of two histone modifications, enhancing understanding of how cells protect their DNA from harmful virus-like elements.
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Jack Bateman @jbateman01.bsky.social · 01/06/2025
Mechanisms and timing of programmed DNA elimination in songbirds www.biorxiv.org/content/10.1...
biorxiv.org
Mechanisms and timing of programmed DNA elimination in songbirds
It is commonly assumed that multicellular organisms contain the same genetic information in all the cells of an individual. However, there is a growing list of species in which parts of the genome are...
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Svetlana Dodonova @dodonova-sveta.bsky.social · 26/05/2025
We’ve uncovered Asgard chromatin structures formed by a Hodarchaeal histone : closed hypernucleosome conserved in archaea and an open form resembling the H3-H4 eukaryotic octasome. Fantastic work by @harshranawat.bsky.social! www.biorxiv.org/content/10.1... #Chromatin #Asgard #Archaea #cryoEM
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Thomas Balan @thomasbalan.bsky.social · 30/04/2025
I add an amazing time last week at the Epigenetics 2025 meeting from the @gensocuk.bsky.social in sunny Belfast! Great discussions and insights on my PhD project! Also very honored to have been awarded the best poster prize!
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Maya Voichek @mayavoichek.bsky.social · 17/03/2025
1/ Transposable elements are often called "jumping genes" because they mobilize within genomes. 🧬 But did you know they can also jump 𝘣𝘦𝘵𝘸𝘦𝘦𝘯 cells? 🤯 Our new study reveals how retrotransposons invade the germline directly from somatic cells. www.biorxiv.org/content/10.1... A short thread 🧵👇
Drosophila follicle showing retrotransposons (pink & yellow) expressed in somatic cells infecting the oocyte
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Thomas Balan @thomasbalan.bsky.social · 18/03/2025
🚨Cool new study from the lab neighbours! They look into two PAX proteins that orchestrate neuronal diversity!
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Angélique Déléris @arabette.bsky.social · 22/01/2025
Our paper on Alternative epigenetic states of Arabidopsis Transposable Elements is finally out in Genome Biology ! rdcu.be/d6Yly
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Alternative silencing states of transposable elements in Arabidopsis associated with H3K27me3
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 13/01/2025
Our #Paramecium artwork is featured on the cover of #NAR! doi.org/10.1093/nar/...
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Nogales Lab @nogaleslab.bsky.social · 08/01/2025
Work led by graduate student @trinitycookis.bsky.social and coauthors Alexandria Lydecker, @paulsauer.bsky.social, and @kasinath-lab.bsky.social is out today where we looked at the inhibition of PRC2 by histone PTMs associated with regions of active transcription. www.nature.com/articles/s41...
nature.com
Structural basis for the inhibition of PRC2 by active transcription histone posttranslational modifications - Nature Structural & Molecular Biology
Structures reveal that histone H3K36me3 and H3K4me3 modifications reduce Polycomb repressive complex 2 (PRC2) function through the inhibition of histone tail engagement and antagonistic binding to the...
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Olivia Charmant @oliviacharmant.bsky.social · 18/12/2024
A brief overview of my latest project in the Duharcourt lab, highlighted by @cnrs.bsky.social and a sneak peek in the head of an artist (aka my sister) inspired by Paramecium.
insb.cnrs.fr
Tri sélectif des petits ARN : un enjeu pour préserver l’intégrité du génome
Dans un article publié dans Nucleic Acids Research, des scientifiques ont identifié un nouveau rôle pour la protéine
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Emilia Dimitrova @edimitrova.bsky.social · 12/12/2024
We have had multiple discussions about why people have not previously observed the very dramatic reduction in transcription upon PNUTS depletion. So I looked at our own TT-seq data and analysed it without including the spike-in. The numbers speak for themselves! Spike-in calibration is important!
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Thomas Balan @thomasbalan.bsky.social · 25/11/2024
Very cool new paper from the lab, delving into sRNAs selective degradation enabling TE control! Congrats @oliviacharmant.bsky.social 🎉🎉
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Karim-Jean Armache @kjarmache.bsky.social · 13/11/2024
Please see our paper in Nature on read-write mechanisms of H2AK119 ubiquitination by Polycomb repressive complex I. Congrats to the whole team, especially Victoria and huge thanks to our collaborator JP Armache! Also big thanks to Mark Foundation for Cancer Research for the support! rdcu.be/dZ5HZ
rdcu.be
Read–write mechanisms of H2A ubiquitination by Polycomb repressive complex 1
Nature - Cryo-electron microscopy and biochemical studies elucidate the read–write mechanisms of non-canonical PRC1-containing RYBP in histone H2A lysine 119 monoubiquitination and their...
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