iiinova — where your digital self keeps evolving

Reposted by Damian Dalle Nogare

napari @napari.fosstodon.org.ap.brid.gy · 26/09/2026

🚀 napari is hiring Remote Developers-in-Residence! Join us to build the future of interactive n-dimensional data visualization in Python. 💻 60% Dev / 20% Maintenance / 20% Community & Outreach 💰 $59.50/hr (Contract, 14–35 hrs/wk) 🌍 100% Remote, open globally Learn more and apply today […]

fosstodon.org

Original post on fosstodon.org

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Damian Dalle Nogare @damiandn.bsky.social · 24/09/2026

Not to put too fine a point on it, but I have been yelling at anyone who will listen about these kinds of pseudo fluorescence i2i methods for years now. For sure some valid use cases, but infinitely many more ways it can (and will) be abused.

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Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 23/09/2026

What if any dataset, any size, any number of dimensions, opened in a browser tab from a link? 🔬🧪💻 Luxar is out today: write it in Python, share it as a link, explore it in any browser. Open source. 🧵 @biohub.org Preprint: doi.org/10.5281/zen... Code: github.com/royerlab/luxar

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Damian Dalle Nogare @damiandn.bsky.social · 18/09/2026

I don't know this technique, but If they're using label free imaging followed by some kind of image-to-image translation task to generate pseudo fluorescence, that would explain a lot of the weird artifacts. But, really stretching the definition of "light microscopy" here Nikon.

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Tamas Nagy @tamasnagy.com · 06/09/2026

Even with all the advancements in automated cell tracking getting us to 90%+ accuracy...that's still a lot of broken tracks over long movies! Our brains are pretty good at this so I made Vizsla 🐕, a little @napari.org plugin, to help you fix your tracks manually. 👉 pypi.org/project/napa...

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bioRxivpreprint @biorxivpreprint.bsky.social · 28/08/2026

FOCUS-3D: Robust, generalizable volumetric cell segmentation for three-dimensional fluorescence microscopy www.biorxiv.org/content/10.64898/20…

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Reposted by Damian Dalle Nogare

c0nc0rdance @c0nc0rdance.bsky.social · 22/08/2026

How your email finds me.

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Damian Dalle Nogare @damiandn.bsky.social · 11/08/2026

Had an abundance of cherry tomatoes from the garden so we're making one of the simplest - and best - pasta sauces. Garlic and tomatoes in a pot, cook long and slow with salt until they've broken down completely, add fresh basil at the end.

A pot filled with multicolor cherry tomatoes on their way to becoming sauce

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Damian Dalle Nogare @damiandn.bsky.social · 01/08/2026

While in southern Italy, had to do the thing

A picture of two scoops of ice cream sandwiched in a brioche, being held in front of the ocean

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Reposted by Damian Dalle Nogare

Aafke Gros @aafkegros.bsky.social · 24/07/2026

Microscopy Nodes 3.1 is out for Blender 5.2! 🎉 This has cool new features for conditional masking, working with even larger data (regional upscaling), and data manipulation! Watch the new youtube tutorials that explain the features: www.youtube.com/playlist?lis...

A FIB-SEM plankton visualization where the top shows only the volumetric data of the chromosomes, and the bottom a normally sliced region of the cell.

A fluorescence microscopy dataset where a region has been reloaded to be much higher resolution

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Damian Dalle Nogare @damiandn.bsky.social · 19/07/2026

Just enjoying another perk of living in Europe

A big bowl of leafy green lettuce that probably won't give me explode diarrhea.

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Teng-Leong Chew @scopeshifu.bsky.social · 15/07/2026

🧪 @aicjanelia.bsky.social and @scientistrachel.bsky.social have just published a new quantitative tool, OpticalFlow3D, for tracking amorphous motion in 3D. Try it out and let us know what you think! tinyurl.com/OpticalFlow3D

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Loïc A. Royer 💻🔬🧪 @loicaroyer.bsky.social · 14/07/2026

📣 Tracking cells through time – including divisions – is a core problem in live-imaging microscopy. We built HOCT, an edge-centric Transformer that hits state-of-the-art on the Cell Tracking Challenge without a pretrained image encoder. Work led by @jookuma.bsky.social arxiv.org/abs/2607.11754 🧪🔬💻

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Damian Dalle Nogare @damiandn.bsky.social · 12/07/2026

FINALLY a histogram in napari! ♥️

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napari @napari.org · 12/07/2026

Struggling for something to do in a TWO DAY gap without ⚽? How about trying our pre-release of napari 0.8.0? napari.org/dev/release/... Of note, this release drops Py3.10 support and deprecates PyQt5 in favor of PyQt6. It also adds some neat new features and improvements! See below: 👇

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Guillaume Jacquemet @guijacquemet.bsky.social · 30/06/2026

Delighted to share our latest preprint "NucleiSky enables cross-scale multimodal registration of microscopy data using nuclei constellations" www.biorxiv.org/content/10.6... Code and App: github.com/CellMigratio...

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Olúfẹ́mi O. Táíwò @olufemiotaiwo.bsky.social · 03/02/2025

as always we need to be careful about what it is that we are using criticisms to actually do in the world and not just what political aesthetic we are trying to express

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David Solecki @so-lets-kilab70.bsky.social · 22/06/2026

What if you could watch chromatin change in live neurons…..IN REAL TIME?Share if this is your dream! My lab is making biosensors to make chromatin visible as neurons wire into circuits & are hiring an Associate Scientist to build, not just execute. Apply: stjude.wd1.myworkdayjobs.com/stjude/job/M...

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Reposted by Damian Dalle Nogare

Virginie Uhlmann @virginieuhlmann.bsky.social · 01/06/2026

📢📢 We are hiring a Bioimage Analyst at the BioVisionCenter! 📢📢 Join our collaboration with the Flow Cytometry Facility and contribute back to the international efforts on open standards for bioimaging data! More information here, reach out if you have any question: jobs.uzh.ch/job-vacancie...

jobs.uzh.ch

UZH: Bioimage Analyst

The University of Zurich is the largest university in Switzerland and one of the most prominent in Europe. For research purposes the Biovision Center and Flow Cytometry Facility offer services to supp...

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Damian Dalle Nogare @damiandn.bsky.social · 21/06/2026

Ok what if the solution here is to send Ryan Gosling on a desperate mission to find the only natural predator of the algae.

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Damian Dalle Nogare @damiandn.bsky.social · 18/06/2026

Just a generational political talent

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Reposted by Damian Dalle Nogare

napari @napari.org · 17/06/2026

napari 0.7.1 is now available!! 🚀 🎉 Read the full release notes here: napari.org/stable/relea... Highlights: the scale bar inherits units from layers, colorbars for points layers, locking layers, and a signed Windows bundle! We thank especially our 9 new brilliant contributors 🤩

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Damian Dalle Nogare @damiandn.bsky.social · 14/06/2026

Since summer is coming and I have a metric ton of mint in the garden I've been working on my mojito recipe and the two key things seem to be: More rum (like 50% more) than the recipes usually call for Using a mint simple syrup in place of regular to pack in extra mint flavor

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Damian Dalle Nogare @damiandn.bsky.social · 07/06/2026

Pretty sure I fought this guy in Expedition 33.

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Damian Dalle Nogare @damiandn.bsky.social · 30/05/2026

Wake up babe new panpsychism just dropped

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Damian Dalle Nogare @damiandn.bsky.social · 23/05/2026

*Frantically flipping through the pages of the latest Harpers*

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Damian Dalle Nogare @damiandn.bsky.social · 11/05/2026

Last week to apply! 👇🏻👇🏻👇🏻 (Closes Friday)

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Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 07/05/2026

The Cimini lab is hiring for both postdocs and interns! The postdoc role will cover bioimage analysis projects and educational material creation; the intern will be working on our Bilayers project for helping distribute and access deep learning tools for bioimage analysis. Click below to learn more!

forum.image.sc

Postdoctoral Associate and Data Science Intern roles - Broad Institute, Cambridge MA USA

The Broad Institute Imaging Platform (the team behind CellProfiler, Piximi, and Bilayers) is currently hiring for postdoctoral and intern roles! Postdoc role: we are looking for 1-2 candidates who ha...

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Damian Dalle Nogare @damiandn.bsky.social · 07/05/2026

Python developers I'm am BEGGING you, on my hands and knees, to include import statements in your code examples. Please do not make me guess which combination of "from X import Y" you've used.

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Damian Dalle Nogare @damiandn.bsky.social · 05/05/2026

Microsplit paper is published! Image multiple structures in one fluorescence channel, and computationally unmix them later. Can't wait to see what the community does with this and what amazing science it can enable. Huge thanks to the coauthors!

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Damian Dalle Nogare @damiandn.bsky.social · 02/05/2026

Update from rural lunigiana: apricots and pears coming along nicely, and one lonely asparagus coming up from the patch

One lonely asparagus growing out of grass clippings

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Damian Dalle Nogare @damiandn.bsky.social · 02/05/2026

Only people who live in Italy will fully appreciate this, but I went to Poste Italiane this morning. By the time I had pulled the ticket out and looked at the screen my number had been called. I went to the window and she had my stuff right next to her. I was in and out in less than a minute.

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Damian Dalle Nogare @damiandn.bsky.social · 28/04/2026

Roughly two weeks (until May 15th) left to apply and join our team! Bioimage Analyst: careers.humantechnopole.it/job/Bioimage... Rsearch Software Engineer: careers.humantechnopole.it/job/Research...

careers.humantechnopole.it

Fondazione Human Technopole - Viale Rita Levi-Montalcini, 1 - Area MIND - 20157 Milano Italy - C.F. 97821360159 - PEC: htechnopole@pec.fondazioneht.it

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Damian Dalle Nogare @damiandn.bsky.social · 26/04/2026

Big day here in rural lunigiana: it's orto planting day! Before and after:

An empty patch of turned over earth surrounded by wooden fencing

The same patch of earth, now filled with tomato, eggplant, pepper and watermelon seedling

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Damian Dalle Nogare @damiandn.bsky.social · 25/04/2026

Today is Festa della Liberazione, April 25th. Also known as the anniversary of the resistance, where we celebrate the liberation of Italy from the nazi/fascist occupiers. youtu.be/4CI3lhyNKfo?...

youtu.be

Bella Ciao - ORIGINALE

YouTube video by BattleForTelenuovo

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Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 19/04/2026

Want to present a poster, talk, or workshop at this year's Images 2 Knowledge (I2K) meeting - Sep 27 - October 2nd in Madison, WI? Please fill out the form by Thursday - we really want to highlight your contributions! airtable.com/appPes56Tahc...

A cow behind some buildings overlooking a lake - top banner says "I2KxBINA 2026 Community Congress", while bottom banner says "Cultivating the Multiscale Imaging Frontier"

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Damian Dalle Nogare @damiandn.bsky.social · 16/04/2026

Fun to be back at QI for another year!

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Damian Dalle Nogare @damiandn.bsky.social · 07/04/2026

Not to be confused with what I just posted, but there is *also* a software engineer position open in the Funke lab! Check it out as well. Spoiler: we will all work closely together to do awesome things! 👇🏻👇🏻👇🏻

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Damian Dalle Nogare @damiandn.bsky.social · 07/04/2026

🚨🚨🚨JOB ALERT🚨🚨🚨 The Image Analysis Unit at Human Technopole in Milan is recruiting for two positions to join our growing team: 1) Bioimage Analyst 2) Research Software Engineer (RSE) Read on to learn why one of these two people should be you!

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