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jules-vanaret.bsky.social

@jules-vanaret.bsky.social
21 followers 34 following 1 posts

Image analysis engineer at EPFL Center for Imaging and CIMé

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Reposted by @jules-vanaret.bsky.social
napari @napari.org · 29/09/2026
New blog post: a recap of our latest hackathon, naPLari in Krakow, Poland, this past July! Read why our hackathons are world famous! (With GloBIAS, we've had attendees from every continent except Antarctica!) And give us a follow to make sure you don't miss the next one! napari.org/island-dispa...
Jules Vanaret demonstrates BDV-style non-orthogonal slicing within napariDevelopers smiling gather around a laptop to look at a demo.hackathon participants looking at a phone together at a group dinnerDevelopers discussing around a laptop
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Reposted by @jules-vanaret.bsky.social
napari @napari.fosstodon.org.ap.brid.gy · 31/07/2026
RE: fosstodon.org/@napari/1166165047810… And it's a wrap! The hackathon was a fantastic success! 🥳 You can look forward to a longer post about all we did, and one of our biggest releases yet in 0.9.0! Huge thanks to all the participants 🤩, and we hope to see you at the next one!
Hackathon participants discussing a new feature demo.Jules Vanaret shows off slicing of volumes with non-orthogonal transforms.The naPLari hackathon crowd: Wouter-Michiel Vierdag, Grzegorz Bokota, Tim Monko, Giannis Liaskas, Draga Doncila Pop, Lorenzo Gaifas, Aroj Hada, Brian Northan, Jules Vanaret, Zuzana Čočková, Curtis Rueden, Juan Nunez-Iglesias, and Margot Chazotte.Celebratory drink after the last full day of the hackathon. 🍻
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Reposted by @jules-vanaret.bsky.social
eLife @elife.bsky.social · 02/07/2026
A quantitative pipeline for whole-mount deep imaging and analysis of multi-layered organoids across scales elifesciences.org/articles/107...
elifesciences.org
A quantitative pipeline for whole-mount deep imaging and analysis of multi-layered organoids across scales
The Tapenade pipeline enables single-cell, whole-mount 3D quantification in dense multilayer organoids, linking spatial gene co-expression and nuclear deformation to emerging tissue-scale…
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Alice Gros @alicegros.bsky.social · 11/10/2025
Quatre années plus tard Des copains, des souvenirs Et un doctorat 🍾🎓
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Morgan Schwartz @msschwartz21.bsky.social · 07/10/2025
#geff v1 is released! 🎉 GEFF is a zarr-based Graph Exchange File Format with special support for tracking applications in Python and Java. Thank you to all the amazing developers who contributed at the Janelia 2025 Trackathon! liveimagetrackingtools.org/geff/
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Sham Tlili @shamtlili.bsky.social · 16/07/2025
Congratulations @alicegros.bsky.social @jules-vanaret.bsky.social & @dunsingvalentin.bsky.social for this huge team effort! Gastruloids morphogenesis is so fascinating and now we can explore and travel through them in 3D & at cell resolution day and night 🤩
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Reposted by @jules-vanaret.bsky.social
Alice Gros @alicegros.bsky.social · 15/07/2025
So excited to share my 1st paper !!🌞 Co-authored with @jules-vanaret.bsky.social @dunsingvalentin.bsky.social, we developped an integrated pipeline for imaging, segmenting and analysing cell-scale patterns in gene expression + tissue properties in complex 3D tissues elifesciences.org/reviewed-pre...
elifesciences.org
A quantitative pipeline for whole-mount deep imaging and analysis of multi-layered organoids across scales
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