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Reposted by HMS Image Analysis Collaboratory

Federico Gasparoli @fedegasparoli.bsky.social · 03/02/2026

📣 We are accepting applications for the 2026 Boston Bioimage Analysis Course (BoBiAC): bobiac.github.io! Join us this July at Harvard Medical School for a 6-day intensive hands-on course to learn bioimage analysis with Python! Apply by May 18th! No prior Python experience required! 🧫->🔬->💻->📊

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 17/07/2025

Day 1 & 2 of #bobiac2025 🐍 With basics of Python in the bag, it was time to analyze images: image handling, pre-processing, cell segmentation and ilastik. We could not have organized this course without the generous support of @bioimagingna.bsky.social. Thank you!

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 14/07/2025

Day 1 of #bobiac2025 🐍 The day started strong with @talley.codes speaking about the Python ecosystem and uv. Students then gave short talks about their research (#coolscience). It was then time to code in Python with @sciencedoodles.bsky.social!

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 30/05/2025

‼️3 days left to apply to the Boston Bioimage Analysis Course (BoBiAC)! 💻 Get started w/Python & learn to analyze fluorescence microscopy images — no programming experience required! Fee waivers available! 🗓️ Apply by June 1st! 🌐 iac.hms.harvard.edu/bobiac/2025/

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 08/05/2025

💻 Apply to our beginner-friendly Boston Bioimage Analysis Course! Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required! Fee waivers available thanks to funding from @bioimagingna.bsky.social! 🗓️ Apply June 1st! iac.hms.harvard.edu/bobiac/2025/

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 07/05/2025

We are proudly hosting 𝐃𝐫. 𝐓𝐚𝐥𝐥𝐞𝐲 𝐋𝐚𝐦𝐛𝐞𝐫𝐭 @talley.codes (CITE, Harvard Medical School): 𝐒𝐢𝐦𝐮𝐥𝐚𝐭𝐢𝐧𝐠 𝐫𝐞𝐚𝐥𝐢𝐬𝐭𝐢𝐜 𝐥𝐢𝐠𝐡𝐭 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲 𝐢𝐦𝐚𝐠𝐞𝐬 𝐮𝐬𝐢𝐧𝐠 𝐦𝐢𝐜𝐫𝐨𝐬𝐢𝐦 When: 𝐌𝐚𝐲 𝟐𝟗𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (Boston time) Join us on Zoom! harvard.zoom.us/j/9762343464...

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 22/04/2025

‼BREAKING‼ We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python! Apply by June 1st! iac.hms.harvard.edu/bobiac/2025

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Reposted by HMS Image Analysis Collaboratory

FocalPlane @focalplane.bsky.social · 17/04/2025

Are you looking to boost your bioimage analysis skills? If so, check out the Boston Bioimage Analysis Course run by @hms-iac.bsky.social and @citehms.bsky.social! Apply by 16 May 2025 focalplane.biologists.com/2025/04/10/b...

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 14/04/2025

✨We are proudly hosting 𝐏𝐫𝐨𝐟. 𝐒𝐢𝐱𝐢𝐚𝐧 𝐘𝐨𝐮 (MIT)✨ “𝐂𝐨𝐦𝐩𝐮𝐭𝐚𝐭𝐢𝐨𝐧𝐚𝐥 𝐚𝐱𝐢𝐚𝐥 𝐝𝐞𝐛𝐥𝐮𝐫𝐫𝐢𝐧𝐠 𝐟𝐨𝐫 𝐢𝐬𝐨𝐭𝐫𝐨𝐩𝐢𝐜 𝟑𝐃 𝐦𝐢𝐜𝐫𝐨𝐬𝐜𝐨𝐩𝐲” 𝐀𝐩𝐫𝐢𝐥 𝟐𝟒𝐭𝐡 @ 𝟏𝟏 𝐚𝐦 𝐄𝐃𝐓 (𝐁𝐨𝐬𝐭𝐨𝐧 𝐭𝐢𝐦𝐞, 𝐔𝐒𝐀) Join us on Zoom! harvard.zoom.us/j/9307790905...

$Abstract: Three-dimensional subcellular imaging is often hampered by diffraction limits in thick, heterogeneous tissues and invalid assumptions about data distribution and imaging systems. We introduce SSAI-3D, a weakly physics-informed, domain-shift-resistant framework that robustly achieves isotropic 3D imaging. Demonstrations in various label-free samples, plus validation on publicly available 3D datasets with unknown blurring and noise, confirm its potential for more accurate subcellular analysis.$

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 24/03/2025

💻 Announcing the Boston Bioimage Analysis Course — BoBiAC! Join us this July at Harvard Medical School in Boston for a 6-day deep dive into bioimage analysis with Python, hosted by the IAC and CITE. Apply by May 16th, 2025!

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 16/01/2025

Our QuPath course is back! Join us this semester to learn QuPath with a combination of lectures and hands-on exercises inspired by real research collaborations we worked on. 📌 Introduction to Bioimage Analysis using QuPath 📆 Date: Feb 10, 2025 🔗 tinyurl.com/iac-qupath-2...

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Reposted by HMS Image Analysis Collaboratory

HMS Image Analysis Collaboratory @hms-iac.bsky.social · 08/01/2025

Join us for our first workshops of 2025! 📌 Workshop 1: Image analysis with ImageJ/Fiji 📆 Date: Jan 22 & 24, 2025 🔗 tinyurl.com/iac-fiji-202... 📌 Workshop 2: ImageJ/Fiji's macro language 📆 Date: Jan 28, 2025 🔗 tinyurl.com/iac-fiji-mac... 📍 Location: HMS campus, Boston Open to all—don't miss out!

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 08/01/2025

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 06/03/2024

Join us next Monday 10 AM EDT for a hybrid Bioimage Analysis Seminar! Jeremy Muhlich (Laboratory of Systems Pharmacology) will talk about image processing and data sharing for whole-slide imaging and spatial profiling of tissues and tumors. More information: tinyurl.com/3abxjds2

tinyurl.com

Events for March 2024 | Center for Computational Biomedicine

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Reposted by HMS Image Analysis Collaboratory

Simon F. Nørrelykke @simonfn.bsky.social · 14/02/2024

Cross-posting from X. ZIDAS is coming back home this year to Zurich: A one week, international, bioimage analysis summer school. 8th edition! Apply here: 2024.zidas.org

2024.zidas.org

ZIDAS 2024

This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.

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HMS Image Analysis Collaboratory @hms-iac.bsky.social · 26/01/2024

We're kicking 2024 with a workshop about the Segment Anything Model (SAM) for Microscopy Data, organized with our friends and neighbors from the Nikon Imaging Center. Apply here: t.co/yL2sflfqKY

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