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Rebee

@rebee.bsky.social
1.3K followers 1.3K following 186 posts

Virologist, bioinformatician, NGS, photographer. RNA is my special interest 🧬 Proteomics is growing on me 😬 🇳🇿🇬🇧British Kiwi based in Liverpool 📍 Post doc in the Emmott Lab👩🏻‍🔬👩🏻‍💻 🏳️‍🌈 She/They. 🧠 Neurodivergent ✨ rebee.co.uk

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Daniel Hurdiss @danielhurdiss.bsky.social · 21/09/2026
Excited to share that our norovirus NS3 study is now online in Nature Communications! 🎉 These enzymes, found across an entire order of RNA viruses, have long been molecular motors in search of a function. We think we’ve uncovered their role. (🧵) www.nature.com/articles/s41... #virology #cryoEM
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Emmottlab @emmottlab.bsky.social · 23/06/2026
While Ed can’t make #Nido2026, the lab is well-represented by Max Erdmann, and @rebee.bsky.social ! They will be sharing some of the labs findings on coronavirus replication! Catch Max’s talk tomorrow (Wed) at 3:25, and Rebee’s poster C-0036
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Marty Davies @smartypantsmarty.com · 12/06/2026
Sign it here petition.parliament.uk/petitions/76...
petition.parliament.uk
Petition: Launch a public inquiry into the impact of Section 28 on LGBTQ people
We call on the Government to launch a public inquiry into the impact of Section 28 of the Local Government Act (1988) which specified that Local Authorities could not intentionally promote, through ma...
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British Science Association @britsciassoc.bsky.social · 12/06/2026
We're hiring! The British Science Association is looking for a Grants and Learning Manager (fixed term until Dec 2027) to join our Grants Team in delivering The Ideas Fund. Applications close at midnight on Sunday 5th July 2026. All the details: www.britishscienceassociation.org/grants-and-l...
britishscienceassociation.org
Grants and Learning Manager
The British Science Association is seeking to appoint someone on a fixed term contract to the end of December 2027, to join our Grants Team in delivering The Ideas Fund, an exciting programme which lo...
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Mike Boylan-Kolchin @mbkplus.bsky.social · 03/06/2026
"AI is operating at a PhD level" oh, so it's replying 'sorry for the late response' to every email and complaining about its labor conditions?
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Rebee @rebee.bsky.social · 29/05/2026
New preprint out today lead by collaborators at Zürich!
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Jonathan Göke @jonathangoeke.bsky.social · 26/05/2026
Learn more about the latest long read cDNA sequencing upgrade by ONT and bambu-pipe for analysing single cell and spatial long read RNA-Seq data, presentation by @suiyue-0823.bsky.social @goekelab.bsky.social #RNA26 github.com/GoekeLab/bam...
github.com
GitHub - GoekeLab/bambu-pipe: Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu
Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu - GoekeLab/bambu-pipe
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Rebee @rebee.bsky.social · 26/05/2026
How every day should start 😻🌞🌳☕️
Rebee and her tuxedo cat Todd sitting in the sun
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Iris van Rooij 💭 @irisvanrooij.bsky.social · 21/05/2026
Reminded of someone trying to "train" LLMs to do "sorting", to prove LLMs can "solve problems". Not only a) are LLMs not reliable, but also b) sorting is a computationally easy to solve task, c) we have many efficient algorithms for it, and d) LLMs unnecessarily bloat the resource consumption.
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Rebee @rebee.bsky.social · 21/05/2026
Forgotten my joy for tissue culture and audio books! Good job I just did three time courses back to back to remind myself 🤣🦠
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Rebee @rebee.bsky.social · 21/05/2026
⬇️⬇️⬇️
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Dr Abeba Birhane @abeba.blacksky.app · 18/05/2026
what will it take for our universities to start abandoning genAI
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Valeria Lulla @valerialulla.bsky.social · 20/04/2026
🚨 New paper from the lab! 🚀 We explore “The dynamics and strategy of RNA replication in astroviruses”, now out in NAR Molecular Medicine. Many thanks to all co-authors and congratulations to David Noyvert on his first first-author paper🎉 doi.org/10.1093/narm...
doi.org
The dynamics and strategy of RNA replication in astroviruses
Abstract. Astroviruses are positive-sense single-stranded RNA viruses that cause significant disease across avian and mammalian hosts, yet their replicatio
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Nick Loman @pathogenomenick.bsky.social · 16/05/2026
Rapid release of multiplex PCR amplicon scheme for Andes hantavirus whole genome sequencing validated on control material: www.biorxiv.org/content/10.6... @scalene.bsky.social @stevepullan.bsky.social @ukhsa.bsky.social output from HPRU in Public Health Genomics
biorxiv.org
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Dr Abeba Birhane @abeba.blacksky.app · 12/05/2026
folx, I’ve been working on AI "ethics" for almost a decade now & hate to tell you there’s no such thing as "ethical AI" the only "ethical principle" that works is regulating the shit out of the industry & to take back control of our autonomy, fundamental rights, freedoms & right to exist w/out AI
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Clive McKimmie @clive-mckimmie.bsky.social · 13/05/2026
Happy to share new preprint is now on bioRxiv: "Ultraviolet exposure conditions skin to enhance arbovirus infection and mosquito probing" Led by our then PhD student now Dr. @ailishmccafferty.bsky.social this work asks how UV-exposed skin shapes mosquito-borne virus infection. (1/4)
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F. B. Dincaslan @dincaslan.bsky.social · 13/05/2026
Even before completing its PhD, now it is eligible for postdoc positions 😂 www.nature.com/articles/d41...
nature.com
AI bills can be as big as a postdoc salary. Is the cost worth it?
Recent price hikes, usage limitations and unreliable outputs are causing some scientific researchers to think twice about using artificial intelligence.
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Kai Kupferschmidt @kakape.bsky.social · 13/05/2026
Baric, who is among the most-cited coronavirus researchers in the world, says his lab’s work played pivotal roles in helping companies bring COVID drugs and vaccines to market, saving millions of lives. “My payment for this is to be debarred?” he asks. “I’m being strung out for being a scientist.“ 🧪
science.org
Virologist accused of starting COVID-19 will fight U.S. ban on funding
HHS memo says Ralph Baric had a “pattern of deception” in describing virus studies long before pandemic
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Rebee @rebee.bsky.social · 13/05/2026
AI is coming up a lot in current day to day conversations atm. Naturally. Has anyone come across balanced publications/research about the impact of AI as a research tool? Researcher perspective? Changes in learning and education?
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Emmottlab @emmottlab.bsky.social · 20/03/2026
New preprint! Current T7-based MNV reverse genetics can be performed by co-transfecting plasmids encoding T7 RNA polymerase and vaccinia capping enzymes. We see a further 100-1000-fold boost in titres by incorporating CD300lf-expressing BSR-T7 cells into this system. www.biorxiv.org/content/10.6...
biorxiv.org
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Clare Kelly @clarekelly.bsky.social · 05/02/2026
Chatbots offer a magnificent bribe - a fast, frictionless route to information that bypasses the discomfort of learning. In this op-ed, we describe this as a Faustian bargain, in which we trade away what it means to be human & universities trade away their value www.irishexaminer.com/opinion/comm...
irishexaminer.com
Learning is complex, messy, emotional: AI can’t replicate that
ChatGPT and other AI tools may seem irresistible. But educators should beware, as they could end up trading away the thing that gives them value — the rich experience of slow learning
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Emmottlab @emmottlab.bsky.social · 06/02/2026
Congrats to Dr @stephenholmes.bsky.social on passing his PhD viva today! Thanks to examiners Al Darby and @mtrost.bsky.social!
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Rebee @rebee.bsky.social · 02/02/2026
Fellowship application unsuccessful! First of many I am sure. Might be worth looking to leave Liverpool - if anyone in my network is looking for lecturers/junior group leaders. Hit me up. Virology, informatics, sequencing, RNA mods etc. 🦠🧬🧑‍💻
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Isabel @isabelott.bsky.social · 31/01/2026
As much as my heart’s truest answer to the rhetorical question kicking off this thread was, “nope!” it’s an important read for those of us in the broader emerging virus research space.
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DEI Virologist @kyt-thatsme.bsky.social · 31/01/2026
This might be the thread that gets me to quit all together because what the actual fuck.
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Rebee @rebee.bsky.social · 28/01/2026
We have landed at Festival of Genomics! 🧬 First stop at Alida Bio! One of the companies to keep an eye out for if you’re interested in RNA mods… and if you’re not. Why?! Also big thanks to Jerome for giving me the special alida tube stand 🤩 favourite colour and everything! #FoG26 #RNAmods
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Rebee @rebee.bsky.social · 13/01/2026
The future is RNome 🧬 New publication out today summarising the ECR experience of the Human RNome consortium meeting in Frankfurt last August! Thanks to coauthors @bennetthenzeler.bsky.social @ramibechara.bsky.social et al for getting this across the line!! www.tandfonline.com/doi/full/10....
tandfonline.com
Conversations at the crossroads of the Human RNome project: a collaborative reflection by the RNome early career Researcher (ECR)
Published in RNA Biology (Just accepted, 2026)
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Nature Biotechnology @natbiotech.nature.com · 19/12/2025
Machine learning enables scalable and systematic hierarchical virus taxonomy - @sullivan-lab.bsky.social go.nature.com/4qoPli9
go.nature.com
Machine learning enables scalable and systematic hierarchical virus taxonomy - Nature Biotechnology
vConTACT3 enables multirank, large-scale classification of eukaryotic and prokaryotic viruses.
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Rebee @rebee.bsky.social · 12/12/2025
It’s happening again…. Used to be straight on this kind of message during the pandemic. Going back there is kind of difficult… how would you handle this… basically. Help. 🦠
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I'ah Donovan-Banfield @idb-virology.bsky.social · 12/12/2025
The absolute highlight of my 2025 is now available on YouTube! Check out the "making of" mini-documentary and full performance of Antiviral Roller Skating at the @britsciassoc.bsky.social Festival earlier this year. My New Years resolution will be to do it all again in a different city! 👀
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Journal of Experimental Medicine @jem.org · 11/12/2025
In this Perspective, Ryan Langlois hypothesizes that antiviral genes are evolutionarily selected for their function at fever temperatures yet are commonly studied at basal temperatures, a potential blind spot in our understanding of antiviral gene mechanisms. rupress.org/jem/article/... #Virology
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Qiyun Zhu @zhuqiyun.bsky.social · 11/12/2025
The scikit-bio paper in online in Nature Methods! Many thanks to our collaborators, community contributors and reviewers! We couldn’t have done it without you. www.nature.com/articles/s41... #Bioinformatics #OpenSource
nature.com
Scikit-bio: a fundamental Python library for biological omic data analysis - Nature Methods
Nature Methods - Scikit-bio: a fundamental Python library for biological omic data analysis
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Rebee @rebee.bsky.social · 11/12/2025
Congratulations again to the excellent @idb-virology.bsky.social for this amazing science communication piece. Please go and watch the videos and keep the vision alive! Yes it is the viral lifecycle being explained by roller skaters…
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Emmottlab @emmottlab.bsky.social · 25/11/2025
New preprint: Viral protease-mediated polyprotein processing in human astroviruses Great collaboration with Lulla lab. And the first of @leandroxneves.bsky.social proteolysis stories. More coming soon! www.biorxiv.org/content/10.1...
biorxiv.org
Viral protease-mediated polyprotein processing in human astroviruses
Positive-sense RNA viruses often encode large polyproteins that are proteolytically processed by viral and host proteases into functional replication proteins. Astroviruses infect intestinal and neuro...
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Emmottlab @emmottlab.bsky.social · 03/12/2025
New preprint from the lab, and joint first authors @biomarkella.bsky.social and @stephenholmes.bsky.social! Single-cell phenotypic analysis and multiplet detection through incorporation of microscopy data into cellenONE-based single-cell proteomic data analysis www.biorxiv.org/content/10.6...
biorxiv.org
Single-cell phenotypic analysis and multiplet detection through incorporation of microscopy data into cellenONE-based single-cell proteomic data analysis
The reliability of single-cell proteomics (SCP) is intrinsically linked to the fidelity of cell isolation; however, the identification of co-isolated cells (doublets or multiplets) remains a persisten...
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Jase Gehring @skyjase.bsky.social · 04/11/2025
big moves! so that's Parse -> Qiagen Scale -> 10X Genomics Fluent -> Illumina next-gen single-cell cell omics, capable of processing 10^6 to 10^8 cells i wonder if what the near term looks like - will commercial kits stagnate while the buyers rebrand?
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David Eccles 🌻🇵🇸7x🩹🛡️ @gringene.org · 05/11/2025
Te Tiriti obligations don't disappear just because the government claims they're not necessary. He Whakaputanga and Te Tiriti o Waitangi are the foundation on which Aotearoa stands, and continue to have legal authority. Without them, there is no kāwanatanga. www.archives.govt.nz/discover-our...
archives.govt.nz
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PastelBio @pastelbio.bsky.social · 04/11/2025
Identification of Capture Phases in Nanopore Protein Sequencing... arxiv.org/abs/2511.0... --- #proteomics #prot-preprint
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Ingrida Olendraite @ingrida.bsky.social · 04/11/2025
RNA Virus Journal Club – Upcoming Talk - this thursday (Nov 6th !) With @rdrpsummit.bsky.social - excited to announce talk and discussion with Dr Sanguu Kim about HF nanopore sequencing strategy for virology :) calendar.app.google/oyRVP6v5Tvjg... CET: 14:00–15:00, Format: 30 min + 30 min
doi.org
CLAE: A High‐Fidelity Nanopore Sequencing Strategy for Read‐Level Viral Variant Detection and Environmental RNA Virus Discovery
High-fidelity Nanopore sequencing offers a cost-effective, portable path to uncovering viral dark matter in complex environments—but suffers from severe read-length bias, low throughput, and limited ...
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Crawford Kilian @crof.bsky.social · 04/11/2025
www.cidrap.umn.edu/covid-19/onl...
cidrap.umn.edu
Only certain types of bats host viruses with high epidemic potential, research suggests
Those found in coastal South America, Southeast Asia, and equatorial Africa are more likely to carry pathogens such as SARS-CoV-2.
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🌈 Dr Ross Brooks @rossbrooks.co.uk · 31/10/2025
🦇🩸⚰️ Happy Halloween! 🧛🩸🦇 Same-sex sexual behaviours in bats were first documented in 1895! Here's a more recent study: www.italian-journal-of-mammalogy.it/Same-sex-sex... #Halloween #HappyHalloween #histsci #histbio #STS #GLAM #queer #lgbtq #queernature #PrideInSTEM 🌈🗃️
Photograph of mounted great false vampire bat (Vampyrum spectrum) against light green background in the collections of the Cole Zoology Museum (University of Reading). Its wings are fully extended and it has sharp teeth. It looks very scary.
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Institute of Infection, Veterinary and Ecological Sciences @livuni-ives.bsky.social · 14/10/2025
First evidence in the UK of breeding aegypti mosquito – the main spreader of dengue, chikungunya and Zika. Dr Marcus Blagrove writes for The Conversation highlighting the need for enhanced mosquito surveillance and proactive strategies to mitigate future risks. bit.ly/3KKlGQP #TeamLivUni
A news title card that reads ’First evidence in the UK of breeding aegypti mosquito – the main spreader of dengue, chikungunya and Zika’ with an image of an aegypti mosquito on a person’s skin.
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Rebee @rebee.bsky.social · 11/10/2025
Something not so sciencey… off to Barcelona next week to screen a documentary my partner has produced and I’m excited! Any Nick Garrie fans? 🎸🎥
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Roni Odai @rodai.bsky.social · 02/10/2025
Viral AlphaFold Database (VAD) is live in Science Advances ~27,000 predicted viral protein monomers & homodimers Conserved folds across bacteria, archaea & eukaryotic viruses New toxin–antitoxin system KreTA uncovered Vast “functional darkness” remains uncharted www.science.org/doi/10.1126/...
science.org
The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes
VAD is a Viral AlphaFold Database of protein monomers and homodimers from viruses infecting hosts across the tree of life.
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Microbiology Society @microbiologysociety.org · 08/10/2025
Following recent decisions by pharmaceutical companies to scale back investment, the UK Parliament’s Science, Innovation and Technology Committee is seeking written evidence on the competitiveness of the UK’s life sciences sector.
Image shows a background with the United Kingdom flag with a vaccine in the foreground.
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Luis Pedro Coelho @luispedrocoelho.bsky.social · 18/09/2025
Full thread will come later, but @annacusco.bsky.social's preprint on the dog pet gut microbiome is out! Using ONT+Illumina, we get better MAGs than to corresponding species representative in public databases doi.org/10.1101/2025...
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APPG on Diversity & Inclusion in STEM @stemdandiappg.bsky.social · 18/09/2025
Our year-long project on Equality, Diversity and Inclusion (#EDI) strategies in the UK’s science and tech sectors has drawn to a close with a new report exploring data collection, analysis and insight. Read our findings and recommendations >> www.britishscienceassociation.org/News/report-...
britishscienceassociation.org
Report highlights disconnect between data collection and action on EDI in UK science and tech sector
A year-long project on Equality, Diversity and Inclusion (EDI) strategies in the UK’s science sector – led by the All-Party Parliamentary Group on Diversity and Inclusion in STEM – has drawn to a clos...
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Elisabeth Bik @elisabethbik.bsky.social · 16/09/2025
Is there anyone here at one of the universities in Wellington, NZ, who would want to host me to give a talk around November 10th?
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 15/09/2025
🧬 Fresh RNA modifications newsletter out now: viral tRNA hijacking, hidden rRNA mods, dynamic Ψ, antibiotic resistance & more. 👉 open.substack.com/pub/rnamodif... #RNAsky #Epitranscriptomics #microsky #ribosome
open.substack.com
✨ RNA Modifications Newsletter – September 15, 2025
issue #3
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Antiviral Roller Skating @antiviral-rskating.bsky.social · 12/09/2025
We are still buzzing from our show! Here’s some snaps of what you missed… in case you were wondering…. Huge thank you to the whole production team and the people who made this happen! @microbiologysociety.org @britsciassoc.bsky.social @emmottlab.bsky.social @livuninews.bsky.social #BSF25
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