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Raunak Basu

@raunakbasu.bsky.social
127 followers 280 following 13 posts

Assistant Professor of Neuroscience at The Edmond and Lily Safra Center for Brain Sciences

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Raunak Basu @raunakbasu.bsky.social · 19/09/2026
Intracranial recordings in humans reveal differential contributions of medial and lateral orbitofrontal cortex to approach–avoidance decision-making www.nature.com/articles/s41...
nature.com
Intracranial recordings in humans reveal differential contributions of medial and lateral orbitofrontal cortex to approach–avoidance decision-making - Nature Neuroscience
Intracranial recordings reveal oppositely tuned activity in the medial and lateral regions of the human orbitofrontal cortex during approach–avoidance decisions: the medial orbital sulcus activates ju...
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Misha Ahrens @mishaahrens.bsky.social · 09/09/2026
Whole-body cellular activity imaging in zebrafish, headed by Virginie Ruetten @vmsruetten.bsky.social - new paper is out: www.nature.com/articles/s41...
nature.com
Imaging cellular activity across all organs reveals body-wide circuits - Nature
An imaging system developed to record cellular activity throughout the whole body of zebrafish captures cellular organ dynamics and identifies multiple distributed circuits.
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Itai Yanai @itaiyanai.bsky.social · 07/09/2026
🔥Does academia stifle creativity? This new perspective argues that academia is currently structured to select against creativity, intellectual risk-taking and bold ideas. Young scientists – best positioned for new ideas – are particularly incentivized to play it safe. www.nature.com/articles/s41...
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Dr. Or M. Bialik |📚|🔬|🌊|⚒️ @obialik.bsky.social · 03/09/2026
Fish with electrical senses have unique brain cells specifically to process that information. The real trick they pull is separating the electricity they emit from the ones they sense. 🧪 Link: www.nature.com/articles/s41586-026-…
a, Schematic of the interference problem facing the passive electrosensory system of weakly electric fish. Responses of EAFs to prey are masked by responses to the EOD of the fish, which vary depending on factors such as water conductivity. b, Schematic of prediction and cancellation of responses to the EOD. Predictions are based on electric organ corollary discharge signals conveyed by GCs (granule cell basis) and require specific patterns of synaptic connectivity. c, Summary diagram of the synaptic connectivity patterns revealed in the present study. Only connections comprising >10% of the total synapses to a given cell type are shown in the diagram. d, Two example Output cells (blue and red) are shown along with EAF (pink) and GC (magenta) inputs overlaid on a cutout of the EM volume (424 × 427 × 45 µm; all EM connectomic data are from a single biological specimen). The dorsal–ventral and anterior–posterior dimensions of the skin surface are mapped onto the x- and z-dimensions of the volume, respectively. The top inset shows example excitatory GC synapses (magenta fill and star) onto apical dendritic spines of the ON cell (red fill). The magenta fill marks the example GC axon visualized in the volume; the magenta star marks another GC axon. The white star marks an inhibitory molecular layer interneuron synapse onto the dendritic shaft of the same ON cell. The bottom inset shows an example excitatory EAF synapse (pink fill) onto the ON cell basal dendrite (red fill). mol, molecular layer; ggl, ganglion layer; plex, plexiform layer; gran, granular layer. e–h, Example reconstructions of major ELL cell types. Axons are shown in black. ON/OFF, Output (h); MG+/MG−, medium ganglion (f); SG+/SG−, small ganglion (g); Gr+, granular; SP−, small plexiform (h). The inset in f shows an example inhibitory synapse between an MG+ cell (orange) and an OFF cell soma (blue).
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Jim Heys @jim-heys.bsky.social · 03/09/2026
I’m very excited to share our new paper, led by the very talented Jack Bowler, a postdoc in the lab! www.nature.com/articles/s41... We all know that the way we learn something matters. But how does a training curriculum actually shape how the brain learns to solve a problem? a 🧵 1/N
nature.com
Structured experience shapes strategy learning and neural dynamics in the medial entorhinal cortex - Nature Neuroscience
The authors use recurrent neural networks to predict how structured prior experience shapes neural dynamics as mice learn flexible timing strategies during complex context-dependent behavior.
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Caswell Barry @caswell.bsky.social · 01/09/2026
Very excited to see this out — real teamwork, led by @laurenb29.bsky.social & Will de Cothi with @lgiocomo.bsky.social, @colinlever.bsky.social, Laurenz Muessig, Fábio Rodrigues, Francesca Cacucci, Tom Wills, Yanjun Sun & Steven Poulter. In Nature Comms: www.nature.com/articles/s41467-026-76686-y
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Lisa Genzel (she/her) @lgenzel.bsky.social · 01/09/2026
New paper from the lab! In this project we identified different ripple types and link them to behavior and other sleep oscillations doi.org/10.1093/slee...
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Victoria Bosch @initself.bsky.social · 28/08/2026
Are brains and artificial neural networks converging onto universal representations? There is a seductive idea making the rounds in NeuroAI / machine learning: train systems well enough, and they all converge on the same representation of reality (i.e. a unique world model). We have thoughts™ 1/n
cell.com
The Umwelt Representation Hypothesis: rethinking Universality
Recent studies reveal striking representational alignment between artificial neural networks (ANNs) and biological brains, leading to proposals that all sufficiently capable systems converge on univer...
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Harrison Ritz @hritz.bsky.social · 27/08/2026
Our task-switching paper is now out at Current Biology! www.cell.com/current-biol... We find that that our brains reset to a task-neutral state between trials, providing flexibility when the upcoming task is uncertain. RNNs also learn this strategy, but only when trained to switch tasks.
schematic of how a brain might reset to a neutral state between trials
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Mark Wagner @mark-j-wagner.bsky.social · 26/08/2026
How the cerebellum separates related contexts—now out in Nature! Martha Garcia-Garcia led this tour de force, with theory from @somnirons.bsky.social & Michał Wójcik. Martha is on the faculty market, and I could not recommend her more highly. My lab is also recruiting! www.nature.com/articles/s41...
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Fenying Zang @fenying-zang.bsky.social · 25/08/2026
Very excited to share that the first paper from my PhD has now been published in Nature Communications!    Does the ageing brain become noisier? We analysed >18,000 neurons across 16 brain regions to find out.   www.nature.com/articles/s41... 1/5
nature.com
Age-related changes in behavioural and neural variability in a decision-making task - Nature Communications
How the reduction of variability in response to sensory stimuli changes with ageing is not fully understood. Using large-scale neural recordings in mice, this study shows that ageing is linked to more...
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Camillo Padoa-Schioppa @camillopadoasch.bsky.social · 25/08/2026
New ms! During choice behavior, OFC neurons encode decision input and output, suggesting the presence of a neural decision circuit within this area. Computational models support the hypothesis, but little is known about actual – or at least functional – connectivity in OFC.
biorxiv.org
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Julijana Gjorgjieva @gjorjulijana.bsky.social · 23/08/2026
Supper happy to see this published. In short, we show how dendrites and inhibition allow neural circuits to learn new representations while protecting representations that are already stored in the network. See below for a detailed post by @cmiehl.bsky.social: www.sciencedirect.com/science/arti...
sciencedirect.com
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Cell Press @cellpress.bsky.social · 21/08/2026
Retrosplenial cortex maturation aligns with the transition from infant forgetting to persistent memory. Learn more in Cell Reports: www.cell.com/cell-reports... Laura A. DeNardo & colleagues
graphical abstract
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Dirk Gütlin @gutlin.bsky.social · 21/08/2026
Strong and localized recurrence controls the dimensionality of neural activity across brain areas www.nature.com/articles/s41...
nature.com
Strong and localized recurrence controls the dimensionality of neural activity across brain areas - Nature Neuroscience
Brain activity is complex but not arbitrary, and some patterns dominate others, with dimensionality describing how many such patterns exist. The authors show how brain connectivity controls dimensiona...
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Ben Hayden @benhayden.bsky.social · 13/08/2026
New paper from the BCM Neurosurgery research team! "Neural basis of compositional control" led by @assiachericoni.bsky.social and @justfineneuro.bsky.social ! 🧵 www.nature.com/articles/s41...
nature.com
Neural basis of compositional control - Nature
Behaviour of human participants in a prey-pursuit task reflects dynamic blending of goal-specific control policies, with hippocampus estimating latent states, anterior cingulate cortex orchestrating p...
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Neuroskeptic @neuroskeptic.bsky.social · 14/08/2026
In mice, hibernation causes the loss of more than 50% of all hippocampal synapses. But after recovery, memories are preserved and most of the 'lost' synapses grow back! www.science.org/doi/10.1126/... "Somehow, the synapse returned."
science.org
Artificial hibernation reveals synaptic engram architecture associated with memory retention
Memories leave lasting physical changes at the synaptic level. Although stable, larger spines are thought to support memory, the high turnover of dendritic spines and the drifting of neuronal represen...
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Nature @nature.com · 10/08/2026
How people experience ticklishness seems to be consistent across cultures go.nature.com/3TLNpFj
go.nature.com
Where are you ticklish? Researchers map the sensation across cultures
People from Chinese, Dutch and Greek cultural backgrounds have the same ‘tickle hotspots’ on the body. And ticklishness is stronger in rarely touched areas.
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Anthony Ramnauth @philoneurosci.bsky.social · 10/08/2026
#Striatal #endocannabinoids drive one-shot #learning doi.org/10.1038/s415...
doi.org
Striatal endocannabinoids drive one-shot learning - Nature Neuroscience
Endocannabinoid-dependent corticostriatal plasticity underlies avoidance learning in mice after a single experience. Disrupting this process impairs learning, revealing a nonclassical synaptic basis s...
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pnkalugin.bsky.social @pnkalugin.bsky.social · 07/08/2026
MORSE is out now in Neuron, with an expanded dataset: www.sciencedirect.com/science/arti... Using crosstalk to our advantage, we demixed norepinephrine & dopamine's binding at each other’s sensors to simultaneously quantify their release from locus coeruleus with resolution in the tens of nM.
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Kanaka Rajan @kanakarajanphd.bsky.social · 07/08/2026
(1/8) Our approach for untangling brain-wide interactions is out today in @cp-neuron.bsky.social! Current-Based Decomposition (CURBD) uses RNNs constrained by real neural data to reveal the input driving neurons, uncovering how brain regions talk to each other. doi.org/10.1016/j.ne... 🧵👇
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Christine Grienberger @cgrienberger.bsky.social · 05/08/2026
🎉 this paper is now out - we show how subicular plateaus are linked to reward locations. Congratulations to the whole team! www.cell.com/cell-reports...
cell.com
Subicular plateaus signal reward locations during goal-directed behavior
Using in vivo whole-cell recordings during goal-directed navigation, Bhatia, Adel, and Grienberger identify plateaus as a prominent feature of subiculum activity. These events preferentially occur nea...
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Physical Review X @physrevx.aps.org · 04/08/2026
Study finds that when a network with low-dimensional structure receives outside input or is perturbed by noise, it can produce either high- or low-dimensional responses depending on the finer structure of the network and its input. Read the study: go.aps.org/4fT3NLA
Two plots showing the network response, z(t) at the top, and its norm, ∥z(t)∥ at the bottom, given an input aligned to the low-rank structure of the network, labeled aligned perturbation x = u, and a random input, x = urand. The norm of z is more than 11 times smaller in response to the aligned versus random perturbation. The local network input, shown as a purple line on the bottom, cancels with external input, shown in green above, to produce suppressed network responses, shown in blue above, in the direction of u.
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
📣New paper! How does the sleeping brain help us to integrate new experiences while managing memories from the past? For his PhD work, @sabbaspoor.bsky.social recorded hippocampal ensembles in freely moving monkeys and found something unexpected. 🧵1/n www.nature.com/articles/s41... 🧪🧠📈👩‍🔬#OpenAccess
nature.com
Experience reorganizes content-specific memory traces in macaques - Nature Neuroscience
In macaques, old memories, relative to new ones, are supported by more stable and interconnected cell assemblies. New-biased and old-biased assemblies reactivate during overnight sleep and can sometim...
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Jennifer Bussell PhD @jenbussell.bsky.social · 30/07/2026
How does the brain represent the value of knowledge? In our paper--out now at Nature Neuroscience--we identify a representation of intrinsic information value within neural population structures in the orbitofrontal cortex in mice. www.nature.com/articles/s41593-026-02377-y #neuroskyence 🧠🧪 (1/8)
nature.com
Representations of the intrinsic value of information in mouse orbitofrontal cortex - Nature Neuroscience
Mice are motivated to seek information of no extrinsic value. Recording neural activity in orbitofrontal cortex reveals a representation of the value of information that is distinct from the value of ...
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Rune W. Berg @runewberg.bsky.social · 28/07/2026
New paper: Spinal circuitry modeled for locomotion using spatial transcriptomics and cell-type projections. Local excitation, long-range inhibition, and a longitudinal skew—an asymmetric "Mexican hat"—give rhythm, rotational dynamics, and gait, with no pacemakers. www.nature.com/articles/s41...
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Kate Jeffery @katejj.bsky.social · 24/07/2026
Happy to say our head-direction-cell-in-3D is finally out! doi.org/10.1038/s420... Confirms that the brain's compass uses a dual-axis rule (like an iphone does) to maintain a constant estimate of horizontal heading even when the head is not horizontal. Blogpost explanation here: shorturl.at/9VdGM
communities.springernature.com
How the brain adapts its 2D compass for a 3D world
The brain’s neural compass seems 2D, detecting only left and right head-turns. However, if the head is tilted in 3D, its rotation around the vertical axis also covertly changes its horizontal facing ...
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Neuroskeptic @neuroskeptic.bsky.social · 24/07/2026
"Replay occurs in the dorsal striatum during offline consolidation of a procedural memory in mice" - even with total hippocampal lesions pubmed.ncbi.nlm.nih.gov/42493550/ It looks like memory replay is a general capability of the brain - not a special feature of the hippocampus!
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Anthony Ramnauth @philoneurosci.bsky.social · 21/07/2026
Parallel independent #voltage #computing along #dendrites of #CA3 pyramidal #neurons | Science www.science.org/doi/10.1126/...
science.org
Parallel independent voltage computing along dendrites of CA3 pyramidal neurons
Dendritic computation contributes to information processing in cortical circuits. Hippocampal CA3 plays a central role in navigation, but how the dendrites of CA3 pyramidal neurons process information...
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dianebissen.bsky.social @dianebissen.bsky.social · 20/07/2026
Back to Bluesky to share the most exciting news: my postdoctoral research is now published in Neuron! We used cricket hunting to show how ethological learning persistently rewires juvenile (but not adult!) visual circuits by co-opting homeostatic plasticity. Full story www.cell.com/neuron/fullt...
cell.com
Ethological learning during the critical period resets synaptic setpoints in mouse binocular visual cortex
Bissen et al. show that prey capture learning profoundly reshapes visual cortical circuitry and function during developmental critical periods, but not in adulthood. These learning-induced structural ...
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Hugo Spiers @hugospiers.bsky.social · 19/07/2026
Brenda Milner is a hero and 108!! She did a lot more than discover the hippocampus is linked to declarative memory, but that work is the most famous.
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Adrian Duszkiewicz @adrian-du.bsky.social · 15/07/2026
Functional Logic of a Cognitive Brain System for Navigation A fascinating review of the Drosophila head-direction system by Gaby Maimon and Larry Abbott #neuroskyence #compneuro
annualreviews.org
Functional Logic of a Cognitive Brain System for Navigation
It is unusual for cognitive neuroscientists to reach consensus around which computations a brain region implements, what algorithms are used to achieve those computations and how the algorithms are im...
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Kevin Mitchell @wiringthebrain.bsky.social · 17/07/2026
Sparse component analysis: A method that uncovers separable computations within neural population activity www.cell.com/neuron/fullt...
cell.com
Sparse component analysis: A method that uncovers separable computations within neural population activity
Zimnik et al. provide a new, interpretable, unsupervised dimensionality approach for neural population activity. Their approach, sparse component analysis (SCA), reveals the latent factors correspondi...
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Mohammed Khallaf @khallaf.bsky.social · 15/07/2026
Our new paper is out in @nature.com! We uncovered how a naked mole-rat queen 👑 controls an entire colony: a natural contraceptive scent that suppresses reproduction in other females! A remarkable mammalian parallel to bees and ants! 🐝🐜 @garyrlewin.bsky.social youtu.be/enfv3zJrWKM?...
youtu.be
Naked mole-rats are ruled by a queen: this chemical puts her in power
YouTube video by nature video
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Michael Beyeler @mbeyeler.bsky.social · 13/07/2026
So excited to be part of this one! Now officially out in Annual Review of Neuroscience 🎉 www.annualreviews.org/content/jour...
annualreviews.org
Ecological Visual Processing in the Mouse
Visual systems evolved to extract behaviorally relevant information while animals move through and interact with their world. Such ecological vision differs fundamentally from standard laboratory paradigms in many key aspects, making this a much harder problem for the brain to solve, and for the neuroscientist to study. However, emerging technologies and experimental approaches have enabled investigation of visual computations under these ecological conditions. These approaches are particularly powerful in the mouse, combining well-developed genetic tools, high-throughput recordings, and quantifiable ethological tasks. Here we review computations that are engaged in ecological contexts, including active sensing, motion processing, scene analysis, distance estimation, and spatial perception. We delineate experimental approaches that engage these computations and synthesize current understanding of their neural implementations based on mouse research. These studies reveal how ecological vision engages distinct processing strategies and novel neural circuitry, while highlighting the vast territory that remains unexplored in understanding real-world visual computation.
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EPFL Brain Mind Institute @epfl-brainmind.bsky.social · 07/07/2026
Your eyes constantly move to hunt for information, a strategy known as infotaxis. New work from Prof. Mackenzie Mathis's lab @trackingactions.bsky.social shows mice do it too: in a VR task, they actively sought out the most informative views, adjusting as visual info changed doi.org/10.1016/j.cu...
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Edvard I Moser @edvardmoser.bsky.social · 11/03/2026
Is spatial navigation innate 🧠? Using #NeuroPixels we show that the #torus 🍩 underlying the #GridCell map exists already on day 10 in rats — before pups open eyes and ears and before they start upright walking. 🧵1:4 👇 www.biorxiv.org/content/10.6...
biorxiv.org
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Neuron @cp-neuron.bsky.social · 02/07/2026
dlvr.it
Sparse component analysis: A method that uncovers separable computations within neural population activity
Zimnik et al. provide a new, interpretable, unsupervised dimensionality approach for neural population activity. Their approach, sparse component analysis (SCA), reveals the latent factors corresponding to distinct computations without users needing to provide behavioral labels or known timing of computations.
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Alon Baram @alonbaram.bsky.social · 29/06/2026
How does the human brain extract abstract structure from experience? We show that sensory-independent relational representations emerge in mPFC over several days. Work with @mgarvert.bsky.social and @behrenstimb.bsky.social now out in @currentbiology.bsky.social: www.cell.com/current-biol...
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Tim Behrens @behrenstimb.bsky.social · 27/06/2026
This paper is an absolutely beautiful combination of a deep set of cognitive ideas, a super creative task, a surprisingly impressive behaviour, and an elegant modelling framework. One of my favourite things in the last year.
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Earl K. Miller @earlkmiller.bsky.social · 26/06/2026
Dimensionality reduction is how the brain acquires knowledge. Cool new paper from the late, great, Mark Stokes. www.nature.com/articles/s41... #neuroscience
nature.com
Learning shapes neural geometry in the primate prefrontal cortex - Nature Neuroscience
Learning transforms prefrontal cortex activity from flexible, high-dimensional representations into compact, task-relevant and abstract codes, enabling efficient generalization of learned rules to new...
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Caswell Barry @caswell.bsky.social · 23/06/2026
Really excited about this work with the awesome Will de Cothi & @shipleysj.bsky.social, out in Nature Reviews Neuroscience. We propose acetylcholine is an analogue of dopamine — tracking not reward prediction errors but state-transition prediction errors. doi.org/10.1038/s41583-026-01058-w
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Erica Busch @elbusch.bsky.social · 11/06/2026
Our new paper is out this week in Nature Neuroscience! www.nature.com/articles/s41... We built a BCI that works with the brain's natural geometry — and we found that people could learn to play a video game with their brains in <1 hr of training. This efficiency is groundbreaking & here's why:
nature.com
Human learning of noninvasive brain–computer interfaces via manifold geometry - Nature Neuroscience
Busch et al. use nonlinear neural manifolds to help humans gain rapid control over a noninvasive brain–computer interface, allowing them to learn how to play a video game with real-time fMRI neurofeed...
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Raunak Basu @raunakbasu.bsky.social · 11/06/2026
Really enjoyed reading this paper by Pereira et al. Very smart design and optimization of a complex maze that tests the use of 'cognitive maps' during planning. www.biorxiv.org/content/10.6...
biorxiv.org
Flexible route planning and rapid structure learning by mice in complex environments
Action selection using predictive models of the environment plays a fundamental role in human and animal behaviour, yet is poorly understood at circuit and algorithmic levels. Spatial navigation is an...
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Flavio Donato @flaviodonato82.bsky.social · 09/06/2026
Two brain circuits. Same learning problem. Shared learning outcomes. Different dynamical implementations. Our work shows that learning is not a single canonical solution but can emerge through distinct population dynamics shaped by circuit architecture. Excited to share our latest preprint! 🧵1/12
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Roddy Grieves @roddy-grieves.bsky.social · 05/06/2026
Ever wonder how your brain navigates the real world? 🧠 Most spatial navigation studies use flat, 2D mazes. But the real world is hilly, irregular, and bumpy! ⛰️ Our new paper in #ScienceAdvances asked a simple question: How does the brain map uneven terrain? 📄 doi.org/10.1126/scia... 🧵👇️️️ 1/
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Hugo Spiers @hugospiers.bsky.social · 04/06/2026
Hillscape cells: Hippocampal place cells map terrain geometry independently of behavior #neuroskyence @roddy-grieves.bsky.social Eleonore Duvelle and Jeff Taube: www.science.org/doi/10.1126/...
science.org
Hippocampal place cells map terrain geometry independently of behavior
Place cells map terrain geometry, not behavior, revealing a surface-based brain code for real-world navigation.
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John Tuthill @tuthill.bsky.social · 04/06/2026
Spontaneous problem-solving in bumble bees. Amazing work by the bees who were put in these puzzling situations by @akshayebhambore.bsky.social in the lab of @olliloukola.bsky.social www.science.org/doi/10.1126/...
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The Transmitter @thetransmitter.bsky.social · 01/06/2026
A hackathon reveals that disagreement in neuroscience runs deeper than most researchers suspect—even in electrophysiology, a field that prides itself on hard data, write @mattiachini.bsky.social and Gaelle Chapuis. #neuroskyence www.thetransmitter.org/reproducibil...
thetransmitter.org
18 teams analyzed a neuro dataset and got different answers
Disagreement in neuroscience runs deeper than most researchers suspect—even in electrophysiology, a field that prides itself on hard data.
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Gouki Okazawa @handle.invalid · 31/05/2026
New review with Cheng Xue at U Chicago @cxue.bsky.social in Trends Neurosci@cp-trendsneuro.bsky.social! We discuss the neural geometry of task-dependent computation: disentangled encoding, RNN modeling, switch cost, etc. www.cell.com/trends/neuro...
cell.com
The ‘neat’ and ‘messy’ in task-dependent neural geometry and computation
To solve diverse real-world tasks, the brain must flexibly switch between task rules and adjust computations. Recent advances in analyzing neural data and modeling neural networks have revealed their ...
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