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Raphaël Pantier

@r-pantier.bsky.social
488 followers 703 following 18 posts

Group leader @igbmc.bsky.social interested in chromatin and cell fate decisions | Former postdoc in Adrian Bird's lab (University of Edinburgh) www.igbmc.fr/en/recherche/teams/gen…

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Reposted by Raphaël Pantier
Duncan Sproul @sproullab.bsky.social · 14/09/2026
🚨 #Postdoc position open. Want to understand non-canonical #epigenetic regulation of mammalian transcription? Come work @uoe-igc.bsky.social in Edinburgh! We’re looking for a motivated & collaborative colleague with a strong track record. 📅 14 October 2026 📢 Please share Apply here 👇
elxw.fa.em3.oraclecloud.com
Post-Doctoral Research Associate
An exciting postdoctoral position is available to research the role of epigenetic marks in gene regulation.
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Reposted by Raphaël Pantier
Marcin J. Suskiewicz @msuskiewicz.eurosky.social · 14/09/2026
Happy to share our preprint on a subset of ZBTB BTB domains as highly efficient natural SUMO 'supersubstrates'. The work was spearheaded by a great postdoc, El Hadji Cisse, with input from other team members and in collaboration with @defossezlab.bsky.social and @ucagne.bsky.social
biorxiv.org
A new class of inherently efficient SUMOylation substrates
SUMOylation is an essential eukaryotic ubiquitin-like post-translational modification that plays a central role in the regulation of various nuclear processes and stress responses. It canonically occu...
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Reposted by Raphaël Pantier
EPIGENETIC HULK @epigenetichulk.bsky.social · 19/08/2026
HAHAHAHAHAHAHAHAHAHAHAHAHAHA! EPIGENETIC HULK LIKE THIS SMASH! NO SMASH NOTES! www.cell.com/cell-genomic...
cell.com
Single-cell 3D genome imaging shows super-enhancer hubs are rare, nonspecific, and neither necessary nor sufficient for transcriptional bursting
Super-enhancers have been proposed to cluster in the nucleus when compared to other genomic elements. Le et al. found that super-enhancer clustering was rare and driven by non-specific interactions. P...
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Reposted by Raphaël Pantier
Reese Richardson @reeserichardson.bsky.social · 25/08/2026
A massive update: At least ~15 companies~ are selling scientists antibodies using faked validation data. We've documented 18,000+ manipulated images on 17,000+ products sold by leading laboratory suppliers including Thermo Fisher, Abcam, Santa Cruz Biotechnology, Millipore Sigma and Bio-Techne. 1/🧵
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Reposted by Raphaël Pantier
IGBMC @igbmc.bsky.social · 20/08/2026
Postdoctoral position in Neurodevelopment, in Juliette Godin’s lab: Species-specific mechanisms of ADAT dysfunction in brain development more info : seafile.igbmc.fr/f/6c8fc378b3...
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Reposted by Raphaël Pantier
IGBMC @igbmc.bsky.social · 30/07/2026
12th Tri-Regional Stem Cell & Developmental Biology Meeting One day, three cities, one shared goal To showcase advances in cell, stem cell and developmental biology while fostering collaborations across Basel, Freiburg and Strasbourg. 12tri-regio2026.sciencesconf.org?lang=en
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Raphaël Pantier @r-pantier.bsky.social · 23/07/2026
Our laboratory is looking for a PhD student in Functional Genomics (fully funded position). Expected starting date: Oct 2026 More info here: www.igbmc.fr/en/igbmc/lif... Please share 📨
igbmc.fr
IGBMC: PhD position available in Raphaël Pantier's lab
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Reposted by Raphaël Pantier
IGBMC @igbmc.bsky.social · 22/07/2026
PhD position in Functional Genomics, in Raphaël Pantier's lab: Interplay between transcription factors and genome architecture in embryonic stem cells more info : amethis3.unistra.fr/amethis-clie...
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Reposted by Raphaël Pantier
Maxim Greenberg @maxvcg.bsky.social · 15/06/2026
🚨Preprint Drop🚨 We are very pleased to release our study on DNA methylation dynamics at enhancers during ESC differentiation! This work was led by Marlet Morales-Franco and Priscillia Lhoumaud 🧵(1/13) www.biorxiv.org/content/10.6...
biorxiv.org
Dual profiling of DNA modifications with enhancer features during the exit of naive pluripotency
Cis-regulatory elements, such as enhancers, play an essential role in coordinating gene expression programs during cellular transitions. As such, substantial efforts have been made to characterize enh...
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Reposted by Raphaël Pantier
Mir Lab @mirlab.bsky.social · 07/06/2026
1/🧵 Can transcription factor condensate formation be explained without phase separation? Our new preprint introduces SPARK, a simulation tool that reproduces condensate behavior (clustering, fusion, FRAP) from diffusion & binding kinetics alone. Movie: 60 sec FRAP sim www.biorxiv.org/content/10.6...
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Richard Sever @richardsever.bsky.social · 30/04/2026
“failure of the research enterprise to provide the time and space for individuals to fail without fear of the consequences risks failure of a grander kind” www.nature.com/articles/d41...
nature.com
We need to talk about failure in science
Failure is part and parcel of research, but discussing it sometimes seems to be taboo in science. It doesn’t need to be.
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Reposted by Raphaël Pantier
IGMM-Montpellier @igmm-montpel.bsky.social · 17/04/2026
🔬IGMM (CNRS/ Univ Montpellier) is hiring Group Leaders in Innovative Biology. @cnrsbiologie.bsky.social @cnrs.fr @umontpellier.bsky.social 📅 1 May–15 June 2026 📩 search2026@igmm.cnrs.fr 📎Full information 👇 #LifeScience #MolecularBiology #Research #PI #CNRS
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i2bcparissaclay.bsky.social @i2bcparissaclay.bsky.social · 17/03/2026
We are looking for outstanding scientists to develop ambitious research programs in molecular and cellular biology, with special interest in multidisciplinary projects and computational biology.More info: www.i2bc.paris-saclay.fr #MolecularBiology #CellBiology #ComputationalBiology #TeamLeaders#I2BC
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Reposted by Raphaël Pantier
Rob Klose @robklose.bsky.social · 13/03/2026
We are excited to be recruiting into 3 Associate Professorship's in @oxfordbiochemistry.bsky.social. Come join us as a colleague and benefit from our vibrant and multidisciplinary environment. Reach out to me if you have any questions. Please repost! (tinyurl.com/48deybuu) (tinyurl.com/4pdvjaft).
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Reposted by Raphaël Pantier
Marcin J. Suskiewicz @msuskiewicz.eurosky.social · 07/01/2026
Much enjoyed this nice cryoEM study of NONO:SFPQ heterocomplex this morning, while it was snowing outside. So happy to read a paper in full again (only a handful of papers read in full in last weeks or even months ☹, and some were to review).
nature.com
The gene-regulating proteins NONO and SFPQ assemble into ordered filaments - Communications Biology
Filament formation of full-length NONO/SFPQ heterodimers was observed and structurally characterized in vitro which may provide a scaffold for gene regulation, paraspeckle formation and DNA double-str...
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Raphaël Pantier @r-pantier.bsky.social · 11/12/2025
Postdoc position available in our lab @igbmc.bsky.social We have an exciting project aimed at re-visiting the (epi-)genomic functions of AT-binding proteins using state-of-the-art technologies: www.igbmc.fr/en/igbmc/lif... Expected start: from March 2026 Please share 📢
igbmc.fr
Postdoctoral researcher position in Functional Genomics | IGBMC
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bioRxivpreprint @biorxivpreprint.bsky.social · 27/11/2025
Single-Molecule DNA Footprinting and Transcription Imaging Reveal the Molecular Mechanisms of Promoter Dynamics www.biorxiv.org/content/10.1101/202…
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Raphaël Pantier @r-pantier.bsky.social · 26/11/2025
1/8🧵 Excited to share two studies in which I was involved within the Bird Lab📄📄 We have explored how the transcription factor SALL4 assembles and shapes chromatin in embryonic stem cells. @kashyapchhatbar.bsky.social @saragiuliani.bsky.social @drphcb-uoe.bsky.social @edinburghbiology.bsky.social
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IGBMC @igbmc.bsky.social · 13/11/2025
The IGBMC is recruiting a new Computational Biology Group Leader through the ENACT AI Chair for Scientific Discoveries, covering cancer, developmental, and structural biology. Join one of Europe’s leading life science centers! cluster-ia-enact.ai/appels-a-pro... Deadline: Jan 7, 2026
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Kashyap Chhatbar @kashyapchhatbar.bsky.social · 24/10/2025
🚀 Excited to share my latest paper on using SHAP, to predict direct target genes of chromatin-associated factors! Check it out for insights into gene regulation and the power of explainable AI in genomics! #XAI #SHAP #Genomics doi.org/10.1371/jour... Let's break down what we found! 👇
doi.org
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies
Author summary Genes are turned on or off through complex processes involving many proteins that interact with DNA wrapped histones and modify their structure. These changes, known as epigenetic modif...
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Raphaël Pantier @r-pantier.bsky.social · 30/10/2025
1/5 Glad to share our latest work with Ian Chambers’ lab published @embojournal.org in which we investigated the role of TET DNA de-methylases during cell fate transitions. Great team effort, many thanks to Sara Gonzalez Brito @ebarbieri.bsky.social @edinuni-irr.bsky.social doi.org/10.1038/s443...
embopress.org
TET knockout cells transit between pluripotent states and exhibit precocious germline entry | The EMBO Journal
imageimageThe roles of TET DNA demethylases during early development remain poorly defined. This work uncovers independence of early mouse embryonic stem cell (ESC) transitions from TET proteins but a...
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Reposted by Raphaël Pantier
The EMBO Journal @embojournal.org · 27/10/2025
TET knockout cells transit between pluripotent states and exhibit precocious germline entry Ian Chambers and collaborators www.embopress.org/doi/full/10....
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Max Planck Institute of Immunobiology and Epigenetics @mpi-ie.bsky.social · 26/09/2025
👉 The next TriRhena Gene Regulation Club takes place at the Friedrich Miescher Institute @fmiscience.bsky.social in Basel. 📅 Nov. 5th, 2025 (14:00-20:00) 📌 FMI, Basel ✍️ Registration deadline: Oct. 20th, 2025 Attendance is free 💸 , but registration mandatory: www.ie-freiburg.mpg.de/gene-regulat...
ie-freiburg.mpg.de
TriRhena Gene Regulation Club
The TriRhena Gene Regulation Club is a one-day symposium that brings together researchers from France (IGBMC), Germany (MPI-IE) and Switzerland (FMI) who share a common interest in gene regulation.
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Reposted by Raphaël Pantier
László Tora @tlaszlo.bsky.social · 12/08/2025
Check out our new collaborative preprint about Affinity-ligand purification of native human low-abundance multi-protein complexes doi.org/10.1101/2025...
doi.org
Affinity-ligand purification of native human low-abundance multi-protein complexes for structure determination
In human cells, large multi-protein transcription co-activators, such as chromatin remodelers or histone acetyltransferases, play critical roles in gene-expression regulation and are often implicated ...
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Reposted by Raphaël Pantier
preLights @prelights.bsky.social · 06/08/2025
Genetic gatekeepers of gametogenesis? TET proteins jointly jam germline specification, synergistically steering cells towards somatic fates. @justingutbio.bsky.social's new #preLight talks about the work of @r-pantier.bsky.social and the team. Have a look!
prelights.biologists.com
TET knockout cells transit between pluripotent states and exhibit precocious germline entry - preLights
Genetic gatekeepers of gametogenesis? TET proteins jointly jam germline specification, synergistically steering cells towards somatic fates.
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Reposted by Raphaël Pantier
Justin Gutkowski @justingutbio.bsky.social · 05/08/2025
Excited to announce I recently highlighted another preprint for @prelights.bsky.social. In this preprint, @r-pantier.bsky.social and co-authors from the Chambers Lab at the University of Edinburgh find that the TET proteins act together to help mammalian cells specify into somatic lineages.
prelights.biologists.com
TET knockout cells transit between pluripotent states and exhibit precocious germline entry - preLights
Genetic gatekeepers of gametogenesis? TET proteins jointly jam germline specification, synergistically steering cells towards somatic fates.
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Reposted by Raphaël Pantier
Jakob Trendel @jtrend.bsky.social · 23/05/2025
Excited our paper is out in Cell @cp-cell.bsky.social! 🧬⚡ DNA photo-crosslinking proteomics in living cells 🎯 Pinpoints protein-DNA interactions to single amino acids 🌎 Globally quantifies DNA binding for >1800 proteins at a timescale of minutes 🔗 www.cell.com/cell/fulltex... 🧵
cell.com
The human proteome with direct physical access to DNA
Zero-distance photo-crosslinking reveals direct protein-DNA interactions in living cells, enabling quantitative analysis of the DNA-interacting proteome on a timescale of minutes with single-amino-aci...
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Nacho Molina @molinalab.bsky.social · 17/05/2025
🚨 New preprint out! Do you think Single Molecule Footprinting and Fiber-seq are super cool but aren't sure how to unlock their full potential? HiddenFoot can help you: www.biorxiv.org/content/10.1...
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Nature @nature.com · 17/04/2025
Nature research paper: Low overlap of transcription factor DNA binding and regulatory targets go.nature.com/4jedGUz
go.nature.com
Low overlap of transcription factor DNA binding and regulatory targets - Nature
A near-complete survey of transcription factor activities in Saccharomyces cerevisiae reveals that most transcription factors have both activator and repressor activities and limited overlap between their binding sites on DNA and regulation of nearby genes.
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Manuel Mendoza @longchrom.bsky.social · 09/04/2025
🚨3 weeks left to apply!🚨 We’re hiring 2 new Group Leaders at IGBMC – early career researchers welcome 🌟 We offer salary support for up to 3 years while you secure a permanent position in the French system. Come join an international research environment in Strasbourg! www.nature.com/naturecareer...
nature.com
Call For Two Group Leader Positions - Strasbourg-Ville, Bas-Rhin (FR) job with IGBMC (Institut de Génétique et de Biologie Moléculaire et Cellulaire) | 12837602
The Institute of Genetics, Molecular and Cellular Biology (IGBMC) is seeking two outstanding group leaders to establish independent research teams.
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Nacho Molina @molinalab.bsky.social · 31/03/2025
Hey! Check out our latest publication. A great collaboration with @longchrom.bsky.social and a nice example of how a negative result, the absence of a response to a transcriptional perturbation, can actually reveal an intriguing gene-specific buffering mechanism. www.science.org/doi/10.1126/...
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Surfin' NuRD @surfinnurd.bsky.social · 29/03/2025
Fully funded (at UK home rate) #PhD studentships to start 2025/2026 at University of Exeter, UK. #Chromatin #StemCells #Signalling #ProteinStructure #LineageCommitment #Transcription Please spread the word, and anyone interested please contact me. lsi.exeter.ac.uk/groups/hendr...
lsi.exeter.ac.uk
Hendrich Group - Starting Sept 2025 - Living Systems Institute - University of Exeter
LSI PHD studentship – start September 2025 or January 2026 Project 1: Title of Project: Control of chromatin remodeller activity...
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Manuel Mendoza @longchrom.bsky.social · 22/03/2025
Come start your lab in beautiful Strasbourg 🇫🇷 www.nature.com/naturecareer...
nature.com
Call For Two Group Leader Positions - Strasbourg-Ville, Bas-Rhin (FR) job with IGBMC (Institut de Génétique et de Biologie Moléculaire et Cellulaire) | 12837602
The Institute of Genetics, Molecular and Cellular Biology (IGBMC) is seeking two outstanding group leaders to establish independent research teams.
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Nacho Molina @molinalab.bsky.social · 20/03/2025
Hey! This was the result of a fantastic collaboration with the @longchrom.bsky.social lab, where we found evidence for a gene-specific buffering mechanism to compensate for transcriptional perturbations.
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Manuel Mendoza @longchrom.bsky.social · 19/03/2025
Almost 17 years after opening our yeast cell division lab, our first transcription paper in mouse embryonic stem cells! www.science.org/doi/10.1126/...
This schematic illustrates the interplay between transcription coactivator perturbations (e.g., TIP60 or ATAC complex depletion) and RNA homeostasis. Perturbations lead to alterations in mRNA synthesis, which are counterbalanced by changes in mRNA export and cytoplasmic decay of specific transcripts, thereby maintaining RNA homeostasis.
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Manuel Mendoza @longchrom.bsky.social · 28/02/2025
We're hiring! The Development & Stem Cells department at @igbmc.bsky.social, Strasbourg 🇫🇷 is recruiting a group leader working in cell & developmental biology. Our Integrated Structural Biology department also has an open call. More details below! + contact me for informal enquiries #sciencejobs
CALL FOR TWO GROUP LEADER POSITIONS
IGBMC 2025
The Institute of Genetics, Molecular and Cellular Biology (IGBMC), a
leading European research institute near Strasbourg, France, is seeking
two outstanding group leaders to establish independent research teams in
Development & Stem Cells & Integrated Structural Biology.CALL FOR TWO GROUP LEADER POSITIONS
IGBMC 2025
The Institute of Genetics, Molecular and Cellular Biology (IGBMC), a
leading European research institute near Strasbourg, France, is seeking
two outstanding group leaders to establish independent research teams in
Development & Stem Cells & Integrated Structural Biology.
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Cathy Abbott @cathyabbott.bsky.social · 05/02/2025
This is not my normal field but it was written by my husband- he is meant to be promoting it but doesn't do social media so you have to make do with me instead 😄 Cohesin as an essential disruptor of chromosome organization: Molecular Cell www.cell.com/molecular-ce...
cell.com
Cohesin as an essential disruptor of chromosome organization
Chromosomes are long strings of DNA carrying multiple genes. A chromosomal factor called cohesin creates loops of DNA proposed to be functional units of the genome. By contrast, it is proposed here th...
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Max Planck Institute of Immunobiology and Epigenetics @mpi-ie.bsky.social · 14/01/2025
The next TriRhena Gene Regulation Club takes place at IGBMC #Strasbourg. Save your seat & submit a talk. Strengthen your local #epigenetics network & collaborate with peers. 📅 5 Feb. 2025 | 14:00 🎟️ Free entry, registration required ✍️ Register by: 24. Jan. www.ie-freiburg.mpg.de/gene-regulat...
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Surfin' NuRD @surfinnurd.bsky.social · 23/11/2024
Loved being back in Edinburgh. Such a beautiful city, such great science. Great to catch up with Adrian, @cathyabbott.bsky.social @cellysally.bsky.social @hannahlong.bsky.social @kashyapchhatbar.bsky.social @r-pantier.bsky.social et al. Thanks Cath+Adrian for the hospitality and Congrats Sara!
Edinburgh skyline with Calton Hill
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