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Paul Daly

@paulsh02.bsky.social
1K followers 2.7K following 21 posts

Senior Researcher, Jiangsu Academy of Agricultural Sciences. CAZymes, filamentous fungi, oomycetes, microbe-microbe & plant-microbe interactions, genomics.

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Paul Daly @paulsh02.bsky.social · 24/09/2026
Please see our latest Biotechnology Advances review on cell wall degrading CAZymes in biocontrol of fungal- and oomycete-caused crop diseases. With Irina Druzhinina @rbgkew.bsky.social and colleagues from Cranfield Uni. (This share link works until Nov 11th) authors.elsevier.com/a/1nqM22d7Ir...
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Galaxy Project @galaxyproject.bsky.social · 21/08/2026
Want to explore AI in Galaxy through a real analysis? 🤖🌌 Join Tyler Collins & Ahmed Awan for a free hands-on #Gateways2026 tutorial using metagenomics to explore Galaxy, reproducible workflows, and the capabilities & limits of AI assistance. 📅 Sept. 1 | 1–2:30 PM ucsd.zoom.us/meeting/regi...
ucsd.zoom.us
Welcome! You are invited to join a meeting: Gateways 2026 Tutorial: AI-Native Science with Galaxy. After registering, you will receive a confirmation email about joining the meeting.
This tutorial introduces participants to the Galaxy Project, an open source platform designed to make computational research more accessible, reproducible, and transparent. After an overview of the pl...
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David Clarke @cleverflick.bsky.social · 05/06/2026
Opportunity for someone interested in a full time permanent lectureship in Environmental Microbiology and Biotechnology at @uccmicrobiology.bsky.social www.jobs.ac.uk/job/DRS979/l...
jobs.ac.uk
Lecturer (Above the Bar) in Environmental Microbiology & Biotechnology at University College Cork
Discover an exciting academic career path as a Lecturer (Above the Bar) in Environmental Microbiology & Biotechnology at jobs.ac.uk. Don't miss out on this job opportunity - apply today!
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Mushtaq Bilal, PhD @mushtaqbilalphd.bsky.social · 04/06/2026
Sci-Hub is an evil website that pirated 85M+ research papers and made them freely available Now they've added AI to their database to make Sci-Bot. It answers your questions using latest, full-text articles. But DO NOT use it. We should all try to make billion-dollar academic publishers richer.
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Paul Daly @paulsh02.bsky.social · 17/05/2026
Please take a look at our recent paper (open access) on the role of proteases and inhibitors in the interaction between antagonist P. oligandrum and plant pathogen P. myriotylum www.tandfonline.com/doi/full/10....
tandfonline.com
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Philip Ball @philipcball.bsky.social · 04/05/2026
This is a great and balanced discussion of Craig Venter and what he achieved, featuring @rogerhighfield.bsky.social @rowhoop.bsky.social @michaelmarshall.newsmast.social.ap.brid.gy and @pennysarchet.bsky.social www.youtube.com/watch?v=1Jin...
youtube.com
The Rich and Complicated Legacy of Craig Venter
YouTube video by The World, The Universe And Us
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Mar Hicks @histoftech.bsky.social · 03/05/2026
Chinese researchers have created a bamboo-based plastic as strong as petroleum-based plastics, which can fully biodegrade in soil in just 2 months phys.org/news/2025-10...
phys.org
Bamboo-based plastic can be made to biodegrade quickly, but still holds up in tough conditions
A new method to produce strong, biodegradable plastic from bamboo is reported in Nature Communications this week. The bioplastic resembles oil-based plastics in strength, shapability, and thermal stab...
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Paul Daly @paulsh02.bsky.social · 21/04/2026
Please have a look at our recent work on Trichoderma nordicum (a recently described species) and biocontrol of oomycete-caused crop diseases www.mdpi.com/2309-608X/12...
mdpi.com
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Genetics Society of America @genetics-gsa.bsky.social · 16/04/2026
📖 Read this important perspective piece in the April issue of #GENETICS that outlines the limitations of Mendelism in genotype-phenotype mapping and advocates for new experimental paradigms to understand context-dependent genetic effects. 🔗 buff.ly/4OAZJS2
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Dor Russ @dorruss12.bsky.social · 28/03/2026
What if plant immunity doesn’t stop bacteria from arriving - but from staying? Excited to share our new Dangl Lab paper (doi.org/10.1073/pnas.2535583123), asking a fundamental co-evolutionary question: which flagellar function is targeted by plant immunity? #Coevolution #Plant-Microbiome #PNAS 🧵1/8
doi.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Hugues Renault @huguesrenault.bsky.social · 28/03/2026
Ever wondered how the #cuticle, a hallmark of land plants, was established? In our latest study, we show that the CUTIN SYNTHASE enzyme family was a key driver of this evolutionary innovation. #plantscience ▶️ www.biorxiv.org/content/10.6... A thread 🧵 [1/8]
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 06/03/2026
The transcription factor SiROCX controls a monocot-specific CAZyme program for host cell wall remodeling during symbiotic root colonization www.biorxiv.org/content/10.64898/20…
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LaBella Lab @lablabella.bsky.social · 18/03/2026
And so it begins!!! #Fungal26 is underway! Thanks to the great work of Antonis Rolas @rokaslab.bsky.social and Meritxell Riquelme
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bioRxivpreprint @biorxivpreprint.bsky.social · 02/12/2025
Construction of a randomly barcoded insertional mutant library in the filamentous fungus Trichoderma atroviride www.biorxiv.org/content/10.1101/202…
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Laurie Belcher @lauriebelch.bsky.social · 29/01/2026
Calling all OrthoFinder users! We’ve just released GLADE, a tool to infer gene gains, losses, duplications, and ancestral genomes across a phylogeny. GLADE runs directly on OrthoFinder results. www.biorxiv.org/content/10.6... github.com/lauriebelch/... (1/10)
biorxiv.org
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Ákos T Kovács @evolvedbiofilm.bsky.social · 19/01/2026
Warfare among rice sheath pathogens: Rhizoctonia solani AG 1-IA neutralizes Pseudomonas fuscovaginae cyclic lipopeptides #ApplEnvironMicrobiol by Jasmine De Rop from Monica Höfte at @fbwugent.bsky.social journals.asm.org/doi/10.1128/...
journals.asm.org
Warfare among rice sheath pathogens: Rhizoctonia solani AG 1-IA neutralizes Pseudomonas fuscovaginae cyclic lipopeptides | Applied and Environmental Microbiology
Rice is a global staple crop that is susceptible to various pathogens, including Pseudomonas fuscovaginae, causing sheath brown rot, and Rhizoctonia solani AG 1-IA, which causes sheath blight. Notably...
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Paul Daly @paulsh02.bsky.social · 05/01/2026
Please take a look our recent method paper (please DM me for full text) Rapid detection of Pythium soft rot in ginger (Zingiber officinale) caused by Pythium myriotylum using LAMP | Plant Disease apsjournals.apsnet.org/doi/10.1094/...
apsjournals.apsnet.org
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Richard Lenski @relenski.bsky.social · 19/12/2025
"The changing roles of Escherichia coli" -- a short essay by yours truly. rdcu.be/eVtXT
rdcu.be
The changing roles of Escherichia coli
Nature Microbiology - Richard Lenski traces the legacy of Escherichia coli and how science is evolving to use this model organism in new ways.
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Proceedings of the National Academy of Sciences @pnas.org · 18/12/2025
Opinion: The “machinal bypass” examines how #AI can replace—not augment—our own presence. From #researchers to #clinicians, what happens when we let machines stand in for ourselves? In PNAS Front Matter: ow.ly/Tro450XLB5q #AI #psychology #psychiatry #MentalHealth #LLM
Illustration of a clinical therapy setting in which a clinician sits at a desk holding playing cards while a computer screen displays a LLM prompt reading, ‘How does that make you feel?’ A patient lies on a couch in the background, conveying a conceptual commentary on the use of artificial intelligence in therapy.
Image credit: Dave Cutler (artist).
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Joint Genome Institute @jgi.doe.gov · 18/12/2025
“The enormous diversity of fungal genomes...offers catalogs of enzymes, secondary metabolites & other parts lists for biotechnology, bioenergy & biomaterials."—Igor Grigoriev, Fungal & Algal Program Head. 🖥️🧬🍄🍄‍🟫 jgi.doe.gov/user-science/science-st…
jgi.doe.gov
Mapping the Earth’s Hidden Fungal Kingdom | Joint Genome Institute
Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation
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Current Biology @currentbiology.bsky.social · 09/12/2025
How #fungi sense and respond to light. Primer in our current issue👇 www.cell.com/current-biol...
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Maddy Seale @maddyseale.bsky.social · 05/12/2025
Out in @science.org this week: PME5 is sequestered in the nucleus and released during cytokinesis allowing its activity to be timed with cell division. www.science.org/doi/10.1126/... #PlantScience #PlantSci
science.org
Cell wall patterning regulates plant stem cell dynamics
The plant cell wall regulates development through spatiotemporal modulation of its chemical and mechanical properties. Pectin methylesterification is recognized as a rheological switch controlling wal...
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Andreas P.M. Weber 🌾🌱🧬 @apmweber.bsky.social · 26/11/2025
AI model Helixer predicts eukaryotic genes ab initio, directly from a plain text FASTA file. No RNA-seq. No protein homology. No repeats, hints, or curated evidence. Raw genome → accurate gene models. Deep learning + HMM, published in @natmethods.nature.com www.nature.com/articles/s41...
nature.com
Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model - Nature Methods
By leveraging both deep learning and hidden Markov models, Helixer achieves broad taxonomic coverage for ab initio gene annotation of eukaryotic genomes from fungi, plants, vertebrates and invertebrat...
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Paul Daly @paulsh02.bsky.social · 26/11/2025
Congrats to the prize winners at Asian Mycological Congress #AMC2025 #mycology #fungi
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Paul Daly @paulsh02.bsky.social · 26/11/2025
Keynote talk from Zhensheng Kang at #AMC2025 on wheat stripe rust. Very interesting pathogen life cycle.
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Paul Daly @paulsh02.bsky.social · 25/11/2025
Great to present at #AMC2025 in session with @sunilmundra.bsky.social @qurban38.bsky.social Sakae Horisawa and Feng Cai
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Paul Daly @paulsh02.bsky.social · 25/11/2025
Starship transposons, HGT on ToxA from Fei Liu from CAS at #AMC2025
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Paul Daly @paulsh02.bsky.social · 25/11/2025
Interesting talk from Marta @mf-s.bsky.social at AMC 2025 #AMC2025 on astromycology
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Paul Daly @paulsh02.bsky.social · 24/11/2025
Lots of tools & resources for Cordyceps militaris for gene editing from Caihong Dong at #AMC2025
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Paul Daly @paulsh02.bsky.social · 24/11/2025
Interesting talk at AMC 2025 #AMC2025 from Arend van Peer on incompatibility in mushrooms
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Paul Daly @paulsh02.bsky.social · 24/11/2025
Interesting keynote talk from Chengshu Wang at AMC 2025 #AMC2025
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Paul Daly @paulsh02.bsky.social · 24/11/2025
Interesting opening talk of AMC 2025 from Marc Stadler @ms-fungi.bsky.social
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Paul Daly @paulsh02.bsky.social · 23/11/2025
AMC 2025 starting today in Guangzhou, China with next-gen mycologists symposium. lots of details of the schedule on website www.amc2025.cn #AMC2025 Big life-size schedule
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QED Science @qedscience.bsky.social · 19/11/2025
Check it out!
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Francis M. Martin @fmartin54.bsky.social · 14/11/2025
We are delighted to let you know that your Plants, People, Planet article 'Demystifying Fungal Systematics: A Gateway to Fungal Literacy and Societal/Ecological Relevance Through Familiar Species' has been published on Early View. nph.onlinelibrary.wiley.com/doi/10.1002/...
nph.onlinelibrary.wiley.com
Demystifying fungal systematics: A gateway to fungal literacy and societal/ecological relevance through familiar species
Fungal systematics can feel overwhelming given the vast species diversity within this kingdom, with numerous subgroups at every taxonomic rank. This often creates a disconnect between the undertsnidn...
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Paul Daly @paulsh02.bsky.social · 11/11/2025
Please take a look at our latest work on regulation in Trichoderma harzianum in response to oomycete cell walls Share link (free access until end Dec 2025): authors.elsevier.com/a/1m55I3MmJP... See also from here: doi.org/10.1016/j.mi...
authors.elsevier.com
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Ubadah Sabbagh @ubadahsabbagh.com · 23/10/2025
PSA: Many of you may have noticed a website floating around called formatmypaper(dot)com. People rightly noted something was fishy. I dig into what happened here: open.substack.com/pub/ubadah/p...
open.substack.com
Beware giving this site your unpublished data
Users noticed the website had fake testimonials and a domain name registered seemingly overnight.
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Gitta Coaker @gittacoaker.bsky.social · 22/09/2025
My department at UC Davis is hiring a mycologist, broadly interpreted. Please repost, share, and consider applying. recruit.ucdavis.edu/JPF07339
recruit.ucdavis.edu
Assistant Professor of Plant Pathology
University of California, Davis is hiring. Apply now!
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Virtual ChemBioTalks @chembiotalks.bsky.social · 10/06/2025
The registration link and program for the 5th Virtual ChemBioTalks are finally available! If you are interested in the field of Chemical Biology, make sure to register for this free, virtual event on September 30th, 2025! cvent.me/G1geWW (1/4) #Chemsky #ChemBio
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Carl Zimmer @carlzimmer.com · 11/08/2025
"Fungi can see and react to a wide range of colors." journals.asm.org/doi/abs/10.1...
journals.asm.org
How fungi see the world: fungal photoreceptors and their role in the regulation of fungal biology | Microbiology and Molecular Biology Reviews
SUMMARYFungi use light as a signal for the regulation of development, to guide the growth of reproductive structures, and to protect the fungal cell from DNA damage produced by light and UV radiation....
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Jessie Uehling @fungaljess.bsky.social · 22/07/2025
Have you heard about MycoEd yet? A model educational program offering training for students on fungal genome sequencing and analysis. how powerful!! #mycofam #thefutureisfungal journals.plos.org/plospathogen...
journals.plos.org
Myco-Ed: Mycological curriculum for education and discovery
Fungi are important and hyperdiverse organisms, yet chronically understudied. Most fungal clades have no reference genomes, impeding our understanding of their ecosystem functions and use as solutions...
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dnarnaresearch.bsky.social @dnarnaresearch.bsky.social · 22/07/2025
The History of Enzyme Evolution Embedded in Metabolism doi.org/10.1101/2025... KIPEs3: Automatic annotation of biosynthesis pathways doi.org/10.1101/2022...
doi.org
The History of Enzyme Evolution Embedded in Metabolism
Phylogenetic reconstructions are a primary record of protein evolution. But what other records can attest to the deep history of enzymes, and what tools are needed to decode their meaning? Here, we de...
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Saloni @scientificdiscovery.dev · 21/07/2025
Recently I learnt that EMBL-EBI has a free online course about AlphaFold — how it works, strengths and limitations, how to use it — and it's very good! There are also little quizzes and interactives. www.ebi.ac.uk/training/onl...
ebi.ac.uk
AlphaFold - A practical guide
AlphaFold - A practical guide
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Tatsuya Nobori @tatsuyanobori.bsky.social · 16/07/2025
www.nature.com/articles/s41... Remodelling autoactive NLRs for broad-spectrum immunity in plants
nature.com
Remodelling autoactive NLRs for broad-spectrum immunity in plants - Nature
Cleavage by pathogen-derived proteases of an engineered chimeric protein activates its plant immune receptor component, enabling broad-spectrum resistance to pathogens in plants.
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Xander Zuijdgeest @xanderzuijdgeest.bsky.social · 13/07/2025
Hey #2025ISMPMI! 🌱 We ofcourse all aim to do great & successful science! However, it doesn't always work out the way we hope, but we rarely hear about those stories.. So let's change that! Find me at my poster P-102 on Tuesday and let's discuss "failed" science, and what we can still learn from it!
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Kevin Folta @kevinfolta.bsky.social · 11/07/2025
🎙️ Just published a new episode of Talking Biotech with Dr. Kevin Folta: A Tribute to Dr. Franklin Stahl and His Elegant Experiment. Have a listen:
share.transistor.fm
A Tribute to Dr. Franklin Stahl and His Elegant Experiment
The elucidation of DNA's structure led to questions about how it was...
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John F. Cryan @jfcryan.bsky.social · 15/06/2025
I See You Dancing, Father by Brendan Kennelly Happy Father’s Day…. "Whatever happens or cannot happen In the time I have to spare I see you dancing, father". poetryarchive.org/poem/i-see-y...
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Current Biology @currentbiology.bsky.social · 12/06/2025
Check out our fungi-tastic special issue, full of marvels of mycology — and many articles accessible for free! 🍄🍄🍄 www.cell.com/current-biol...
cell.com
Current issue: Current Biology
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Current Biology @currentbiology.bsky.social · 09/06/2025
Our newest special issue is now live! Check it out to discover more about diverse and beautiful Fungi🍄🍄‍🟫🍄 On the cover: the fly agaric, Amanita muscaria, releasing its spores in the early morning light. www.cell.com/current-biol...
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Jacob Aron @jjaron.bsky.social · 19/05/2025
Would you like to write for New Scientist? We always work with freelancers, but occasionally I put out a call like this for new writers. I'm looking for 300-700 word news stories about new discoveries. Don't pitch us press releases or the big journals, we have those covered. Pay starts at 51p/word
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